SilkMeta:a comprehensive platform for sharing and exploiting pangenomic and multi-omic silkworm data
会议名称：《中国蚕学会2023年学术年会》
会议日期：2023年
学科分类：0710[理学-生物学] 07[理学] 0905[农学-畜牧学] 09[农学] 071007[理学-遗传学] 090501[农学-动物遗传育种与繁殖]
关 键 词：Silkworm pan-genome multi-omics database
摘 要：The silkworm Bombyx mori is a domesticated insect that serves as an animal model for research and *** silkworm super-pan-genome dataset,which we published last year,is a unique resource for the study of global genomic diversity and phenotype-genotype *** we present SilkMeta(http://***),a comprehensive database covering the available silkworm pan-genome and multi-omics *** database contains 1,082 short-read genomes,546 long-read assembled genomes,1,168 transcriptomes,294 phenotype characterizations(phenome),tens of millions of variations(variome),7,253 long non-coding RNAs(lncRNAs),18,717 full length transcripts,and a set of population *** have compiled publications on functional genomics research and genetic stock deciphering(mutant map).A range of bioinformatics tools is also provided for data visualization and *** large batch of omics data and tools were integrated in twelve functional modules that provide useful strategies and data for comparative and functional genomics *** interactive bioinformatics platform SilkMeta will benefit not only the silkworm but also the insect biology communities.