Genomic and transcriptional changes in response to pinene tolerance and overproduction in evolved Escherichia coli
作者机构：Institute of Synthetic BiologyMOE Key Laboratory of Bioinorganic and Synthetic ChemistrySchool of Life SciencesSun Yat-Sen UniversityGuangzhou 510275China
出 版 物：《Synthetic and Systems Biotechnology》 (合成和系统生物技术（英文）)
年 卷 期：2019年第4卷第3期
页 面：113-119页
核心收录：
学科分类：0710[理学-生物学] 0831[工学-生物医学工程（可授工学、理学、医学学位）] 07[理学] 1001[医学-基础医学(可授医学、理学学位)] 071007[理学-遗传学] 0703[理学-化学] 0836[工学-生物工程]
基 金：We are grateful to the National Natural Science Foundation of China(Grant NO.201808248) the Natural Science Foundation of Guangdong Province(NO.2018A030310255) the Project of the Scientific and Technical Program of Guangzhou(No.201607010028)for their financial support.
主 题：Comparative omics analysis CRISPRa CRISPRi Pinene Escherichia coli Biosynthesis
摘 要：α-Pinene is an important monoterpene,which is widely used as a flavoring agent and in fragrances,pharmaceuticals and biofuels.Although an evolved strain Escherichia coli YZFP,which had higher tolerance to pinene and titer,has been successfully used to produce high levels of pinene,the pinene titer is much lower than that of hemiterpene(isoprene)and sesquiterpenes(farnesene)to date.Moreover,the overall cellular physiological and metabolic changes caused by higher tolerance to pinene and overproduction of pinene remains unclear.To reveal the mechanism of Escherichia coli YZFP with the higher tolerance to pinene and titer,a comparative genomics and transcriptional level analyses combining with CRISPR activation(CRISPRa)and interference(CRISPRi)were carried out.The results show that the tolerance to pinene and the overproduction of pinene in E.coli may be associated with:1)the mutations of the DXP pathway genes,the rpoA and some membrane protein genes,and their upregulations of transcription levels;and 2)the mutations of some genes and their downregulation of transcriptional levels.These comparative omics analyses provided some genetic modification strategies to further improve pinene production.Overexpression of the mutated cbpA,tabA,pitA,rpoA,sufBCDS,mutS,ispH,oppF,dusB,dnaK,dxs,dxr and flgFGH genes further improved pinene production.This study also demonstrated that combining comparative omics analysis with CRISPRa and CRISPRi is an efficient technology to quickly find a new metabolic engineering strategy.
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