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ACBP4-WRKY70-RAP2.12 module positively regulates submergence-induced hypoxia response in Arabidopsis thaliana

Journal of Integrative Plant Biology 2024年第6期66卷 1052-1067页

作者： Mengyun Guo Yingjun Yao Kangqun Yin† Luna Tan Meng Liu Jing Hou Han Zhang Ruyun Liang Xinran Zhang Heng Yang Xiaoxiao Chen Jinrui Tan Yan Song Shangling Lou Liyang Chen Xuejing Liu Si Tang Yongqi Hu Jin Yan Wensen Fu Kai Yang Ruijia Zhang Xuerui Li Yao Liu Zhen Yan Wei Liu Yu Han Jianquan Liu Kangshan Mao Huanhuan Liu Key Laboratory for Bio‐resources and Eco‐environment&State Key Lab of Hydraulics&Mountain River Engineering Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research StationKey Laboratory for Bio‐resource and Eco‐environment of Ministry of EducationCollege of Life SciencesSichuan UniversityChengdu 610065China

ACYL-CoA-BINDING PROTEINs(ACBPs)play crucial regulatory roles during plant response to hypoxia,but their molecular mechanisms remain poorly *** study reveals that ACBP4 serves as a positive regulator of the plant hypoxia response by interacting with WRKY70,influencing its nucleocytoplasmic shuttling in Arabidopsis ***,we demonstrate the direct binding of WRKY70 to the ACBP4 promoter,resulting in its upregulation and suggesting a positive feedback ***,we pinpointed a phosphorylation site at Ser638 of ACBP4,which enhances submergence tolerance,potentially by facilitating WRKY70's nuclear ***,a natural variation in this phosphorylation site of ACBP4 allowed *** to adapt to humid conditions during its historical demographic *** further observed that both phosphorylated ACBP4 and oleoyl-Co A can impede the interaction between ACBP4 and WRKY70,thus promoting WRKY70's nuclear ***,we found that the overexpression of orthologous Bna ***4and Bna ***70 in Brassica napus increases submergence tolerance,indicating their functional similarity across *** summary,our research not only sheds light on the functional significance of the ACBP4 gene in hypoxia response,but also underscores its potential utility in breeding flooding-tolerant oilseed rape varieties.

关键词： ACBP4 Arabidopsis thaliana humid adaptation natural variation RAP2.12 WRKY70

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Conservation genomic investigation of an endangered conifer,Thuja sutchuenensis,reveals low genetic diversity but also low genetic load

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Plant Diversity 2024年第1期46卷 78-90页

作者： Tongzhou Tao Richard IMilne Jialiang Li Heng Yang Shiyang Wang Sihan Chen Kangshan Mao Key Laboratory for Bio-Resource and Eco-Environment of Ministry of Education&Sichuan zoige Alpine wetland ecosystem National Observation and research station College of Life ScienceSichuan UniversityChengduChina Institute of Molecular Plant Science School of Biological ScienceUniversity of EdinburghEdinburgh EH93BFUK College of Science Tibet UniversityLhasa 850000Xizang Autonomous RegionPR China

Endangered species generally have small populations with low genetic diversity and a high genetic *** sutchuenensis is an endangered conifer endemic to southwestern *** was once considered extinct in the wild,but in 1999 was ***,little is known about its genetic *** collected 67 individuals from five wild,isolated *** populations,and used 636,151 SNPs to analyze the level of genetic diversity and genetic load in *** to delineate the conservation units of ***,based on whole transcriptome sequencing data,as well as target capture sequencing *** found that populations of *** could be divided into three *** groups had low levels genetic diversity and were moderately genetically *** findings also indicate that *** suffered two severe bottlenecks around the Last Glaciation Period and Last Glacial *** Thuja species,*** presented the lowest genetic load and hence might have purged deleterious mutations efficiently through purifying ***,distribution of fitness effects analysis indicated a high extinction risk for *** lines of evidence identified three management units for *** *** possesses a low genetic load,low genetic diversity,suboptimal fitness,and anthropogenic pressures all present an extinction risk for this rare *** might also hold true for many endangered plant species in the mountains all over the world.

关键词： Sichuan Arborvitae Genetic load Deleterious mutations Demographic history Conservation genomics

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Temporal changes in mixing effects on litter decay and nitrogen release in a boreal riparian forest in northeastern China

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Journal of Forestry research 2024年第2期35卷 33-41页

作者： Simin Wang Bo Liu Rui Li Xiaoxin Sun Rong Mao Key Laboratory of National Forestry and Grassland Administration on Forest ecosystem Protection and Restoration of Poyang Lake Watershed College of ForestryJiangxi Agricultural UniversityNanchang 330045People’s Republic of China Key Laboratory of wetland Ecology and Environment Northeast Institute of Geography and AgroecologyChinese Academy of SciencesChangchun 130102People’s Republic of China Key Laboratory of Sustainable Forest ecosystem Management of Ministry of Education School of ForestryNortheast Forestry UniversityHarbin 150040People’s Republic of China Heilongjiang Sanjiang Plain wetland ecosystem research station Fuyuan 156500People’s Republic of China

In riparian forests,litter decay provides essential energy and nutrients for both terrestrial and fluvial *** mixing effects(LMEs)are crucial in regulating litter decay and nutrient dynamics,yet how LMEs change over time is unclear in riparian *** this study,leaf litter of three common species(Alnus sibirica *** Turcz,Betula platyphylla Sukaczev,and Betula fruticosa Pall.)were mixed in an equal mass ratio and LMEs were measured for mass and nitrogen(N)remaining in whole litter mixtures over a 3-year period in a boreal riparian forest,northeastern *** were also assessed for component litter mass and N remaining by separating litter mixtures by *** the decay of litter mixtures,antagonistic effects on mass and N remaining were dominant after one and two years of decay,whereas only additive effects were observed after three *** correlated negatively with functional diversity after the first and two years of decay but disappeared after three *** sorting litter mixtures by species,non-additive LMEs on mass and N remaining decreased over incubation ***,non-additive LMEs were more frequent for litter of both *** and *** with lower N concentration than for *** litter with higher N *** results indicate that incubation time is a key determinant of litter mixing effects during decay and highlight that late-stage litter mixture decay may be predicted from single litter decay dynamics in boreal riparian forests.

关键词： Biodiversity Litter quality Litter mixtures Synergistic effects Functional diversity

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An innovative classification system for ranking the biological effects of marine aromatic hydrocarbons based on fish embryotoxicity

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Acta Oceanologica Sinica 2024年第6期43卷 153-162页

作者： Ronghui Zheng Chao Fang Fukun Hong Min Zhang Fulong Gao Yusheng Zhang Jun Bo Key Laboratory of Marine Ecological Conservation and Restoration Third Institute of OceanographyMinistry of Natural ResourcesXiamen 361005China Observation and research station of Coastal wetland ecosystem in Beibu Gulf Ministry of Natural ResourcesBeihai 536015China

Petroleum hydrocarbon pollution is a global concern,particularly in coastal *** aromatic hydrocarbons(PAHs) are regarded as the most toxic components of petroleum *** this study,the biomonitoring and ranking effects of petroleum hydrocarbons and PAHs on the marine fish model Oryzias melastigma embryos were determined in the Jiulong River Estuary(JRE) and its adjacent waters in *** results showed that the levels of petroleum hydrocarbons from almost all sites met the primary standard for marine seawater quality,and the concentrations of the 16 priority PAHs in the surface seawater were lower compared with those in other coastal areas worldwide.A new fish expert system based on the embryotoxicity of ***(OME-FES) was developed and applied in the field to evaluate the biological effects of petroleum hydrocarbons and *** selected physiological index and molecular indicators in OME-FES were appropriate biomarkers for indicating the harmful effects of petroleum hydrocarbons and *** outcome of OME-FES revealed that the biological effect levels of the sampling sites ranged from level Ⅰ(no stress) to level Ⅲ(medium stress),which is further corroborated by the findings of nested analysis of variance(ANOVA) *** results suggest that the OME-FES is an effective tool for evaluating and ranking the biological effects of marine petroleum hydrocarbons and *** method may also be applied to evaluate other marine pollutants based on its framework.

关键词： petroleum hydrocarbons polycyclic aromatic hydrocarbons fish expert system integrated biomarker response nested one-way analysis of variance

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Response mechanism of soil microorganisms to simulated precipitation in the source wetland of Qinghai Lake

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Ecological Processes 2024年第2期13卷 61-71页

作者： Xinye Wang Ni Zhang Kelong Chen Tiexi Chen Desheng Qi Yuanxi Ma School of Geographical Sciences Qinghai Normal University National Positioning Observation and research station of Qinghai Lake wetland ecosystem in Qinghai National Forestry and Grassland Administration Key Laboratory of Tibetan Plateau Land Surface Processes and Ecological Conservation(Ministry of Education) Qinghai Normal University School of Geographical Sciences Nanjing University of Information Science and Technology Qinghai Provincial land spatial Planning research Institute

Background Changes in precipitation patterns crucially impact soil microbial communities, and the ecosystem in Qinghai-Tibet Plateau(QTP) is highly vulnerable to climate change. However, we do not fully understand how soil microbial communities in the source wetlands of QTP respond to changes in precipitation. In this study, we employed advanced techniques such as high-throughput sequencing and metabolomics to investigate how soil microbial communities in a source wetland of Qinghai Lake respond to changes in precipitation after quadrennial precipitation *** Our findings showed that the predominant microbiota in the source wetland was Proteobacteria. Interestingly, alterations in precipitation levels, whether increased or reduced, did not significantly impact the diversity or functional groups of the microbial community. However, the structure of the microbial community did respond notably to changes in precipitation, leading to shifts in the relative abundance of Spirochaetes and Treponema. A notable finding was that reduced precipitation levels(– 25% and-50%) and mild increases in precipitation(25%) within the region contributed to increased soil carbon content. However, this effect ceased to manifest when precipitation increased by 50%. Additionally, the reduction in precipitation prompted the release of soil metabolites like syringic acid and aldosterone, while enhanced precipitation resulted in a decrease in aldosterone *** Precipitation changes altered the relative abundance of soil microbial communities and metabolites, which was conducive to increasing carbon storage in this alpine wetland.

关键词： Qinghai-Tibet Plateau Climate change Precipitation gradient Carbon and nitrogen cycles LC/MS

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Identification and Molecular Characterization of the Alkaloid Biosynthesis Gene Family in Dendrobium catenatum

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Phyton-International Journal of Experimental Botany 2024年第1期93卷 81-96页

作者： Liping Yang Xin Wan Runyang Zhou Yingdan Yuan College of Horticulture and Landscape Architecture Yangzhou UniversityYangzhouChina Jiangsu Academy of Forestry NanjingChina Jiangsu Yangzhou Urban Forest ecosystem National Observation and research station YangzhouChina

As one of the main active components of Dendrobium catenatum, alkaloids have high medicinal value. The physicochemicalproperties, conserved domains and motifs, phylogenetic analysis, and cis-acting elements of the genefamily members in the alkaloid biosynthesis pathway of D. catenatum were analyzed by bioinformatics, and theexpression of the genes in different years and tissues was analyzed by qRT-PCR. There are 16 gene families,including 25 genes, in the D. catenatum alkaloid biosynthesis pathway. The analysis of conserved domains andmotifs showed that the types, quantities, and orders of domains and motifs were similar among members ofthe same family, but there were significant differences among families. Phylogenetic analysis indicated that thegene family members showed some evolutionary conservation. Cis-acting element analysis revealed that therewere a large number of light-responsive elements and MYB (v-myb avian myeloblastosis viral oncogene homolog)-related elements in these genes. qRT-PCR showed that expressions of gene family members involved in alkaloidsynthesis were different in different years and tissues of D. catenatum. This study provides a theoretical basisfor further exploration of the regulatory mechanisms of these genes in the alkaloid biosynthesis of D. catenatum.

关键词： Dendrobium catenatum gene family alkaloid biosynthesis

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Disparities in tree mortality among plant functional types(PFTs)in a temperate forest:Insights into size-dependent and PFT-specific patterns

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Forest ecosystems 2024年第4期11卷 480-490页

作者： Man Hu Hang Shi Rui He Bingbin Wen Haikun Liu Kerong Zhang Xiao Shu Haishan Dang Quanfa Zhang Key Laboratory of Aquatic Botany and Watershed Ecology Wuhan Botanical GardenChinese Academy of SciencesWuhan 430074China Danjiangkou wetland ecosystem Field Scientific Observation and research station Chinese Academy of Sciences&Hubei ProvinceWuhan 430074China University of Chinese Academy of Sciences Beijing 100049China Forest&Nature Lab Department of EnvironmentGhent UniversityGeraardsbergsesteenweg 267Melle-Gontrode9090Belgium

Tree mortality significantly influences forest structure and function,yet our understanding of its dynamic patterns among a range of tree sizes and among different plant functional types(PFTs)remains *** study analysed size-dependent tree mortality in a temperate forest,encompassing 46 tree species and 32,565 individuals across different PFTs(i.e.,evergreen conifer *** broadleaf species,shade-tolerant ***-intolerant species).By employing all-subset regression procedures and logistic generalized linear mixed-effects models,we identified distinct mortality patterns influenced by biotic and abiotic *** results showed a stable mortality patte rn in eve rgreen conifer species,contrasted by a declining pattern in deciduous broadleaf and shadetolerant,as well as shade-intolerant species,across size *** contribution to tree mortality of evergreen conifer species shifted from abiotic to biotic factors with increasing size,while the mortality of deciduous broadleaf species was mainly influenced by biotic factors,such as initial diameter at breast height(DBH)and conspecific negative *** shade-tolerant species,the mortality of small individuals was mainly determined by initial DBH and conspecific negative density dependence,whereas the mortality of large individuals was subjected to the combined effect of biotic(competition from neighbours)and abiotic factors(i.e.,convexity and pH).As for shade-intolerant species,competition from neighbours was found to be the main driver of tree mortality throughout their growth ***,these insights enhance our understanding of forest dynamics by revealing the size-dependent and PFT-specific tree mortality patterns,which may inform strategies for maintaining forest diversity and resilience in temperate forest ecosystems.

关键词： Size-dependent tree mortality Plant functional type Neighbourhood competition Topography variables Soil properties

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Contemporary Asymmetric Genetic Introgression Between Two Pelophylax Species in Shanghai

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Asian Herpetological research 2024年第1期15卷 1-11页

作者： Xu WEI Wenli LIU Gang WANG Rui MA Meiling HUANG Jiaxin ZHENG Tingwei DONG Changqing YUAN Shunqi BO Xiao YUAN Ben LI Shuo MA Qu YUE Youzhong DING Zhenghuan WANG School of Life Sciences East China Normal UniversityShanghai 200241China Shanghai Landscaping and City Appearance Administrative Bureau Shanghai 200041China State Key Laboratory of Estuarine and Coastal research East China Normal UniversityShanghai 200241China Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration East China Normal UniversityShanghai 200241China Yangtze Delta Estuarine wetland ecosystem Observation and research station Ministry of Education&Shanghai Science and Technology CommitteeShanghai 202162China

Human disturbances are considered to break reproduction barriers among *** increases in hybridization events have been reported among a large number of taxonomic groups in anthropogenic environments,providing novel insights into species evolution mechanisms and conservation management in the *** Eastern Golden Frog(Pelophylax plancyi)and BlackSpotted Frog(***)are two sympatric anuran species with a long history of mitochondrial genome introgression in highly urbanized continental East ***,there is only limited understanding of the pattern of their contemporary hybridization and factors influencing their interspecific relationship under anthropogenic ***,interspecific hybridization between *** and *** at the population level was investigated in *** except two haplotypes obtained from both species in Shanghai were mixed together,and located in the introgression clade,implying multiple ancient mitochondrial introgression events occurred in the populations of our study *** genetic introgression was detected by microsatellite markers,with 0.7%of *** and 14.6%of *** identified as contemporary admixed *** with the trend of population density,higher genetic diversity of neutral microsatellite loci was found in the more abundant ***;however,variation in mitochondrial(Cyt-b)and nuclear(POMC)genes was higher in relatively rare *** population density of *** and number of water patches within local habitats were significantly positively correlated with both occurrences and proportions of admixed individuals in the populations of *** and *** the prevalent transformation of habitats in urbanized areas,these results imply that a high population density in isolated artificially altered habitats is likely to increase interspecific ***,population monitoring and improveme

关键词： anthropogenic disturbances interspecific hybridization Pelophylax species abundance urban landscape urbanization

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Spatiotemporal Variability and Environmental Controls of Temperature Sensitivity of ecosystem Respiration across the Tibetan Plateau

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Advances in Atmospheric Sciences 2024年第9期41卷 1821-1842页

作者： Danrui SHENG Xianhong MENG Shaoying WANG Zhaoguo LI Lunyu SHANG Hao CHEN Lin ZHAO Mingshan DENG Hanlin NIU Pengfei XU Xiaohu WEN Key Laboratory of Land Surface Process and Climate Change in Cold and Arid Regions Northwest Institute of Eco-Environment and ResourcesChinese Academy of SciencesLanzhou 730000China zoige Plateau wetlands ecosystem research station Northwest Institute of Eco-Environment and ResourcesChinese Academy of SciencesLanzhou 730000China University of Chinese Academy of Sciences Beijing 100049China College of Atmospheric Sciences Lanzhou UniversityLanzhou 730000China Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands Northwest Institute of Eco-Environment and ResourcesChinese Academy of SciencesLanzhou 730000China

Warming-induced carbon loss via ecosystem respiration(R_(e))is probably intensifying in the alpine grassland ecosystem of the Tibetan Plateau owing to more accelerated warming and the higher temperature sensitivity of R_(e)(Q_(10)).However,little is known about the patterns and controlling factors of Q_(10)on the plateau,impeding the comprehension of the intensity of terrestrial carbon-climate feedbacks for these sensitive and vulnerable ***,we synthesized and analyzed multiyear observations from 14 sites to systematically compare the spatiotemporal variations of Q_(10)values in diverse climate zones and ecosystems,and further explore the relationships between Q_(10)and environmental ***,structural equation modeling was utilized to identify the direct and indirect factors predicting Q_(10)values during the annual,growing,and non-growing *** results indicated that the estimated Q_(10)values were strongly dependent on temperature,generally,with the average Q_(10)during different time periods increasing with air temperature and soil temperature at different measurement depths(5 cm,10 cm,20 cm).The Q_(10)values differentiated among ecosystems and climatic zones,with warming-induced Q_(10)declines being stronger in colder regions than elsewhere based on spatial *** was the most cardinal factor in predicting annual Q_(10)values,significantly and positively correlated with Q_(10).Soil temperature(Ts)was identified as the other powerful predictor for Q_(10),and the negative Q_(10)-Ts relationship demonstrates a larger terrestrial carbon loss potentiality in colder than in warmer regions in response to global *** that the interpretations of the effect of soil moisture on Q_(10)were complicated,reflected in a significant positive relationship between Q_(10)and soil moisture during the growing season and a strong quadratic correlation between the two during the annual and non-growing *** findings are conducive to imp

关键词： carbon cycle eddy covariance measurements ecosystem respiration Q_(10)value Tibetan Plateau climate change

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Estimating leaf mercury content in Phragmites australis based on leaf hyperspectral reflectance

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ecosystem Health and Sustainability 2020年第1期6卷 240-250,239页

作者： Weiwei Liu Mengjie Li Manyin Zhang DaanWang Ziliang Guo Songyuan Long Si Yang Henian Wang Wei Li Yukun Hu Yuanyun Wei Hongye Xiao Institute of wetland research Chinese Academy of ForestryBeijingChina Beijing Key Laboratory of wetland Services and Restoration BeijingChina cHengshuihu National wetland ecosystem research station HengshuiHebeiChina Hanshiqiao National wetland ecosystem research station BeijingChina

Introduction:Highmercury(Hg)concentrations affect the chlorophyll in leaves,therebymodifying leaf *** is a promising technique for the rapid,nondestructive evaluation of leaf Hg *** this study,we investigated Hg contents and reflective hyperspectra of reed leaves(Phragmites communis)in a gold mining(Jilin province,China).Spectral parameters sensitive to Hg content were identified through basic spectral transformations,continuous wavelet transformation(CWT),and spectral indices *** Hg inversion models were developed using stepwise multiple linear regression,partial least squares regression,and random forest ***:The results indicated that:1)leaf Hg content decreased with increasing distance from the mine:Jiapigou(JPG)>Erdaocha(EDC)>Laojingchang(LJC)>Erdaogou(EDG)>Lingqian(LQ)>Weishahe(WSH).2)Hg–sensitive wavelengths were primarily in the visible region;CWT increased the correlation between hyperspectral data and leaf Hg content,and improved the regression and accuracy of inversion;3)the continuumremoval–CWT–stepwise multiple linear regression was better for estimating low leaf Hg content;while the differential spectral index–partial least squares regression was better for estimating high leaf Hg ***:These hyperspectral inversion methods could be used for rapid,nondestructive monitoring of wetland plants.

关键词： Mercury pollution reed leaf hyperspectrum inversion model nondestructive monitoring

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