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Cryopreservation of bovine sperm causes single‑strand DNA breaks that are localized in the toroidal regions of chromatin

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Journal of Animal Science and Biotechnology 2025年第1期16卷 92-106页

作者： Jordi Ribas‑Maynou Rodrigo Muiño Carolina Tamargo Marc Yeste Biotechnology of Animal and Human Reproduction(TechnoSperm) Institute of Food and Agricultural TechnologyUniversity of GironaS17003 GironaSpain Unit of Cell Biology Department of BiologyFaculty of SciencesUniversity of GironaS17003 GironaSpain Present Address:Unit of Cell Biology and Medical Genetics Department of Cell BiologyPhysiology and ImmunologyAutonomous University of BarcelonaS08193 BellaterraSpain department of Animal Pathology Faculty of Veterinary MedicineUniversity of Santiago de CompostelaS15705 LugoSpain department of Animal Selection and Reproduction The Regional Agri-Food Research and Development Service of Asturias(SERIDA)S33394 GijónSpain Catalan Institution for research and Advanced Studies(ICREA) S08010 BarcelonaSpain

Background Sperm cryopreservation is widely used in the cattle industry,as it allows for disassociating the localiza-tion of sires and the collection of semen from the timing of artificial *** freeze-thawing is known to impair sperm DNA integrity,whether the damage induced consists of single-(SSB)or double-strand breaks(DSB)has not been *** addition,no previous study has addressed if DNA breaks preferentially reside in specific genome regions such as those forming the toroid linker regions,or are rather spread throughout the regions linked to *** main aim of the present work,therefore,was to elucidate the type and localization of the DNA damage generated by cryopreservation and to evaluate its impact on artificial insemination outcomes in *** The incidence of SSB and DSB was evaluated in 12 ejaculates before and after cryopreservation with the Comet assay,and the localization of the DNA breaks was assessed using pulsed-field gel electrophoresis(PFGE).Before cryopreservation,the incidence of SSB was 10.99%±4.62%and involved 20.56%±3.04%of sperm cells,whereas these figures significantly(P0.990)before and after cryopreservation(before:incidence of 13.91%±1.75%of sperm DNA affecting 56.04%±12.49%of sperm cells;after:incidence of 13.55%±1.55%of sperm DNA involving 53.36%±11.00%of sperm cells).Moreover,PFGE revealed that the percentage of sperm DNA fragments whose length was shorter than a toroid(<31.5 kb)was greater(P<0.0001)after(27.00%±4.26%)than before freeze-thawing(15.57%±4.53%).These differences indicated that the DNA breaks induced by cryopreservation affect the regions condensed in protamines,which are structured in *** the other hand,in vivo fertility rates were associated to the incidence of SSB and DSB in frozen-thawed sperm(P=0.032 and P=0.005),but not w

关键词： Cattle DNA damage Fertility Sperm Toroid linker regions

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Personalized federated few-shot node classification

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Science China(Information Sciences) 2025年第1期68卷 204-218页

作者： Yunfeng ZHAO Xintong HE Guoxian YU Jun WANG Yongqing ZHENG Carlotta DOMENICONI School of Software Shandong University Joint SDU-NTU Centre for Artificial Intelligence research Shandong University department of Mathematics National University of Singapore department of Computer Science George Mason University

Personalized federated learning(PFL) aims to train customized models for individual clients in a decentralized setting, with the account of non-independent and identically distributed data across clients. However, most PFL methods adopt uniform classification layers for diverse clients and give rise to error-prone predictions, due to the task heterogeneity notably prominent in decentralized graph data scenarios. Although some PFL solutions setup client-specific classification layers for each client and optimize them only locally, they are corrupted with limited local training data. We propose an innovative solution called federated parameter decoupling and node augmentation(Fed PANo) to address these problems and to achieve personalized federated few-shot node classification, which is a prevalent and challenging but unexplored topic. Specifically, Fed PANo first separates the local model into the GNN and classifier to handle unique client-specific task variations. The GNN is trained through federated learning to capture shared knowledge of graph nodes across clients, while the classifier is custom-designed and trained individually for each client. Additionally, a generic classifier shared among clients is adopted to encourage the GNN's grasp of shared information. Then Fed PANo further proposes the node generator along with its local and collaborative training strategies to deal with the node scarcity of clients. Extensive experimental results on benchmark datasets confirm that Fed PANo outperforms eight competitive baselines across different settings.

关键词： personalized federated learning few-shot learning node classification task heterogeneity parameter decoupling node augmentation

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Integrating machine learning and human use experience to identify personalized pharmacotherapy in Traditional Chinese Medicine:a case study on resistant hypertension

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Journal of Traditional Chinese Medicine 2025年第1期45卷 192-200页

作者： CHE Qianzi LIU Dasheng XIANG Xinghua TIAN Yaxin XIE Feibiao XU Wenyuan LIU Jian WANG Xuejie WANG Liying BAI Weiguo HAN Xuejie YANG Wei department of Medical Statistics Institute of Basic Research in Clinical MedicineChina Academy of Chinese Medical Sciences department of Science and Education Medical Statistics Teaching and Research OfficeInstitute of Basic Research in Clinical MedicineChina Academy of Chinese Medical Sciences Computer department Xiyuan Hospital of the China Academy of Chinese Medical Sciences Traditional Chinese Medicine Standards research Center Medical Statistics Teaching and Research OfficeInstitute of Basic Research in Clinical MedicineChina Academy of Chinese Medical Sciences

OBJECTIVE: To enhance the understanding of identifying personalized pharmacotherapy options in Traditional Chinese Medicine(TCM), and further support the registration of new TCM drugs. METHODS: Generalized Boosted Models and XGBoost were employed to construct a classification model to identify the bad prognosis factors in resistant hypertension(RH) patients. Furthermore, we used association analysis to explore the rules of "symptomsyndrome" and "symptom-herb" for the major influencing factors, in order to summarize prescription pattern and applicable patients of TCM. RESULTS: Patients with major adverse cardiac events mostly have complex symptoms of phlegm, stasis, deficiency and fire intermingled with each other, and finally summarized the human experience of using Chinese herbal medicine to precisely intervene in some symptoms of RH patients on the basis of conventional Western medical treatment. CONCLUSIONS: Machine learning algorithms can make full use of human use experience and evidence to save clinical trial resources and accelerate the development of TCM varieties.

关键词： human clinical experience machine learning new drugs registration personalized pharmacotherapy

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Role of copper chelating agents: between old applications and new perspectives in neuroscience

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Neural Regeneration research 2025年第3期20卷 751-762页

作者： Rosalba Leuci Leonardo Brunetti Vincenzo Tufarelli Marco Cerini Marco Paparella Nikola Puvača Luca Piemontese department of Pharmacy-Pharmaceutical Science University of Bari Aldo MoroBariItaly department of Precision and Regenerative Medicine and Jonian Area(DiMePRe-J) Section of Veterinary Science and Animal ProductionUniversity of Bari Aldo MoroBariItaly department of Engineering Management in Biotechnology Faculty of Economics and Engineering Management in Novi SadUniversity Business Academy in Novi SadNovi SadSerbia

The role of copper element has been an increasingly relevant topic in recent years in the fields of human and animal health, for both the study of new drugs and innovative food and feed supplements. This metal plays an important role in the central nervous system, where it is associated with glutamatergic signaling, and it is widely involved in inflammatory processes. Thus, diseases involving copper(Ⅱ) dyshomeostasis often have neurological symptoms, as exemplified by Alzheimer's and other diseases(such as Parkinson's and Wilson's diseases). Moreover, imbalanced copper ion concentrations have also been associated with diabetes and certain types of cancer, including glioma. In this paper, we propose a comprehensive overview of recent results that show the importance of these metal ions in several pathologies, mainly Alzheimer's disease, through the lens of the development and use of copper chelators as research compounds and potential therapeutics if included in multi-target hybrid drugs. Seeing how copper homeostasis is important for the well-being of animals as well as humans, we shortly describe the state of the art regarding the effects of copper and its chelators in agriculture, livestock rearing, and aquaculture, as ingredients for the formulation of feed supplements as well as to prevent the effects of pollution on animal productions.

关键词： agriculture Alzheimer's disease chelators copper feed supplements multi-target

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Effects of monoglyceride blend on systemic and intestinal immune responses,and gut health of weaned pigs experimentally infected with a pathogenic Escherichia coli

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Journal of Animal Science and Biotechnology 2025年第1期16卷 345-363页

作者： Sangwoo Park Shuhan Sun Lauren Kovanda Adebayo O.Sokale Adriana Barri Kwangwook Kim Xunde Li Yanhong Liu department of Animal Science University of CaliforniaDavisCA 95616USA BASF Corporation Florham Park 07932USA BASF SE LampertheimGermany department of Animal Science Michigan State UniversityEast LansingMI 48824USA School of veterinary Medicine University of CaliforniaDavisCA 95616USA

Background Monoglycerides have emerged as a promising alternative to conventional practices due to their biolog-ical activities,including antimicrobial ***,few studies have assessed the efficacy of monoglyceride blend on weaned pigs and their impacts on performance,immune response,and gut health using a disease chal-lenge ***,this study aimed to investigate the effects of dietary monoglycerides of short-and medium-chain fatty acids on the immunity and gut health of weaned pigs experimentally infected with an enterotoxigenic Escherichia coli *** Pigs supplemented with high-dose zinc oxide(ZNO)had greater(P<0.05)growth performance than other treatments,but no difference was observed in average daily feed intake between ZNO and monoglycerides groups during the post-challenge *** in ZNO and antibiotic groups had lower(P<0.05)severity of diarrhea than control,but the severity of diarrhea was not different between antibiotic and monoglycerides *** fed with monoglycerides or ZNO had lower(P<0.05)serum haptoglobin on d 2 or 5 post-inoculation than *** in ZNO had greater(P<0.05)goblet cell numbers per villus,villus area and height,and villus height:crypt depth ratio(VH:CD)in duodenum on d 5 post-inoculation than pigs in other *** supplemented with monoglyc-erides,ZNO,or antibiotics had reduced(P<0.05)ileal crypt depth compared with control on d 5 post-inoculation,contributing to the increase(P=0.06)in VH:***,pigs in ZNO expressed the lowest(P<0.05)TNFa,IL6,IL10,IL12,IL1A,IL1B,and PTGS2 in ileal mucosa on d 5 post-inoculation,and no difference was observed in the expres-sion of those genes between ZNO and *** of ZNO and antibiotic had significant impacts on metabolic pathways in the serum compared with control,particularly on carbohydrate and amino acid metabolism,while limited impacts on serum metabolites were observed in monoglycerides group when compared with cont

关键词： Diarrhea Enterotoxigenic Escherichia coli Gut health Monoglycerides Systemic immunity Weaned pigs

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Exploiting fly models to investigate rare human neurological disorders

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Neural Regeneration research 2025年第1期20卷 21-28页

作者： Tomomi Tanaka Hyung-Lok Chung department of Neurology Houston Methodist Research InstituteHoustonTXUSA department of Neurology Weill Cornell Medical CollegeNew YorkNYUSA

Rare neurological diseases,while individually are rare,collectively impact millions globally,leading to diverse and often severe neurological *** attributed to genetic mutations that disrupt protein function or structure,understanding their genetic basis is crucial for accurate diagnosis and targeted *** investigate the underlying pathogenesis of these conditions,researchers often use non-mammalian model organisms,such as Drosophila(fruit flies),which is valued for their genetic manipulability,cost-efficiency,and preservation of genes and biological functions across evolutionary *** tools available in Drosophila,including CRISPR-Cas9,offer a means to manipulate gene expression,allowing for a deep exploration of the genetic underpinnings of rare neurological *** boasts a versatile genetic toolkit,rapid generation turnover,and ease of large-scale experimentation,making it an invaluable resource for identifying potential drug *** can expose flies carrying disease-associated mutations to various compounds,rapidly pinpointing promising therapeutic agents for further investigation in mammalian models and,ultimately,clinical *** this comprehensive review,we explore rare neurological diseases where fly research has significantly contributed to our understanding of their genetic basis,pathophysiology,and potential therapeutic *** discuss rare diseases associated with both neuron-expressed and glial-expressed *** cases include mutations in CDK19 resulting in epilepsy and developmental delay,mutations in TIAM1 leading to a neurodevelopmental disorder with seizures and language delay,and mutations in IRF2BPL causing seizures,a neurodevelopmental disorder with regression,loss of speech,and abnormal *** we explore mutations in EMC1 related to cerebellar atrophy,visual impairment,psychomotor retardation,and gain-of-function mutations in ACOX1 causing Mitchell ***-of-fun

关键词： ACOX1 Drosophila melanogaster glia lipid metabolism model organisms neuroinflammation neurologic disorders neuron rare disease VLCFA

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General Automatic Solution Generation for Social Problems

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Machine Intelligence research 2025年第1期22卷 145-159页

作者： Tong Niu Haoyu Huang Yu Du Weihao Zhang Luping Shi Rong Zhao Center for Brain-Inspired Computing research(CBICR) Optical Memory National Engineering Research Centerand Department of Precision InstrumentTsinghua UniversityBeijing100084China IDG/McGovern Institute for Brain research Tsinghua UniversityBeijing100084China THU-CET HIK Joint research Center for Brain-Inspired Computing Beijing100084China

Given the escalating intricacy and multifaceted nature of contemporary social systems,manually generating solutions to address pertinent social issues has become a formidable *** response to this challenge,the rapid development of artificial intelligence has spurred the exploration of computational methodologies aimed at automatically generating ***,current methods for the auto-generation of solutions mainly concentrate on local social regulations that pertain to specific ***,we report an automatic social operating system(ASOS)designed for general social solution generation built upon agent-based models that enables both global and local analyses and regulations of social problems across spatial and temporal *** adopts a hypergraph with extensible social semantics for a comprehensive and structured representation of social *** also incorporates a generalized protocol for standardized hypergraph operations and a symbolic hybrid framework that delivers interpretable solutions,yielding a balance between regulatory efficacy and functional *** demonstrate the effectiveness of the ASOS,we apply it to the domain of averting extreme events within international oil futures *** generating a new trading role supplemented by new mechanisms,ASOS can adeptly discern precarious market conditions and make front-running interventions for nonprofit *** study demonstrated that ASOS provides an efficient and systematic approach for generating solutions for enhancing our society.

关键词： General automatic generation global-local regulation hypergraph social representation symbolic hybrid scheme generalized operation protocol

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Strain accumulation in the Mentawai Forearc Sliver,Indonesia,inferred from continuous GNSS-derived strain rate

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Geodesy and Geodynamics 2025年第1期16卷 1-6页

作者： Leni Sophia Heliani Cecep Pratama Adi Wibowo David Prambudi Sahara Susilo Susilo Sidik Tri Wibowo Ayu Nur Safii Oktadi Prayoga Ajat Sudrajat Mizan Bustanul Fuady Bisri Evi Dwi Kurniasari Sheilla Evelinda Nicholas Genta Setiawan Gunawan department of Geodetic Engineering Universitas Gadjah Mada department of Computer Science Universitas Diponegoro Global Geophysics research Group Institut Teknologi Bandung research Center for Geological Disaster National Research and Innovation Agency Geospatial Information Agency Meteorological Climatological and Geophysical Agency Graduate School of International Cooperation Studies Kobe University Graduate School of Geodetic Engineering Universitas Gadjah Mada

The Mentawai Forearc Sliver(MFS) is characterized by oblique deformation formed as slip partitioned between normal and parallel trench plate convergence. The surge of great earthquakes from 2004 to2012 along the adjacent Sunda trench left a large unbroken segment known as the Mentawai Seismic Gap. Here, we adopted continuous Global Navigation Satellite System(GNSS) observation data to identify the present regional crustal deformation using geodetic strain rates. The principal strain rate, dilatation rate, and maximum shear strain rate are about 0.13 microstrain/yr, 0.2 microstrain/yr, and 0.1 microstrain/yr, respectively, with the range of its uncertainties between 0.01 and 0.04 microstrain/yr. The dilatation and maximum shear strain rates reveal the spatial coverage of strike-slip duplex and backthrust tectonics along the Mentawai Forearc Sliver.

关键词： Mentawai Forearc Dilatation Shear Geodetic

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Seasonal influence on miRNA expression dynamics of extracellular vesicles in equine follicular fluid

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Journal of Animal Science and Biotechnology 2025年第1期16卷 136-152页

作者： Jean M.Feugang Ahmed Gad Nico G.Menjivar Ghassan M.Ishak Samuel Gebremedhn Melba O.Gastal Notsile H.Dlamini Radek Prochazka Eduardo L.Gastal Dawit Tesfaye department of Animal and Dairy Sciences Mississippi State UniversityMississippi StateMS 39762USA Animal Reproduction and Biotechnology Laboratory(ARBL) Department of Biomedical SciencesCollege of Veterinary Medicine and Biomedical SciencesColorado State UniversityFort CollinsCO 80523USA department of Animal Production Faculty of AgricultureCairo UniversityGiza 12613Egypt department of Surgery and Obstetrics College of Veterinary MedicineUniversity of BaghdadBaghdad 10011Iraq Animal Science School of Agricultural SciencesSouthern Illinois UniversityCarbondaleIL 62901USA J.R.Simplot Company KunaID 83634USA Institute of Animal Physiology and Genetics Czech Academy of SciencesLiběchov 27721Czech Republic

Background Ovarian follicular fluid(FF)is a dynamic environment that changes with the seasons,affecting follicle development,ovulation,and oocyte *** in the follicles release tiny particles called extracellular vesicles(EVs)containing vital regulatory molecules,such as microRNAs(miRNAs).These miRNAs are pivotal in facilitating commu-nication within the follicles through diverse signaling and information transfer ***-coupled miRNA signaling is implicated to be associated with ovarian function,follicle and oocyte growth and response to various environmen-tal ***,we investigated how seasonal variations directly influence the ovulatory and anovulatory states of ovarian follicles and how are they associated with follicular fluid EV-coupled miRNA dynamics in *** Ultrasonographic monitoring and follicular fluid aspiration of preovulatory follicles in horses during the ano-vulatory(spring:non-breeding)and ovulatory(spring,summer,and fall:breeding)seasons and subsequent EV isola-tion and miRNA profiling identified significant variation in EV-miRNA cargo *** identified 97 miRNAs with dif-ferential expression among the groups and specific clusters of miRNAs involved in the spring transition(miR-149,-200b,-206,-221,-328,and-615)and peak breeding period(including miR-143,-192,-451,-302b,-100,and let-7c).Bioinformatic analyses showed enrichments in various biological functions,e.g.,transcription factor activity,transcrip-tion and transcription regulation,nucleic acid binding,sequence-specific DNA binding,p53 signaling,and post-trans-lational *** analyses revealed distinct sets of significantly up-and down-regulated miRNAs associ-ated with spring anovulatory(Cluster 1)and summer ovulation–the peak breeding season(Clusters 4 and 6).Conclusions The findings from the current study shed light on the dynamics of FF-EV-coupled miRNAs in relation to equine ovulatory and anovulatory seasons,and their roles in understanding the

关键词： Extracellular vesicle Follicle growth Follicular fluid Horse Mare Ovulation Pre-ovulation Seasonal breeding

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Vertical variations in planar lamination of marine shale: Elucidating hydrodynamic changes during the Ordovician-Silurian transition on the Upper Yangtze Block

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Journal of Palaeogeography 2025年第01期14卷 221-244页

作者： Zhen-Sheng Shi Tian-Qi Zhou Hui-Bo Song Yong-Bin Niu Sha-Sha Sun department of Unconventional Oil and Gas Research Institute of Petroleum Exploration and DevelopmentPetroChina College of Resources and Environment Henan Polytechnic University

The hydrodynamics and their evolution on the Upper Yangtze Block during the Ordovician-Silurian transition period remain unclear. The present study is an assessment of how regional and global events may have influenced the hydrodynamic evolution based on a planar lamination investigation of the shales from the Upper Yangtze Block. Analyses of large thin sections and argon-ion polished thin sections using field emission-scanning electron microscopy(FE-SEM) showed that there are four types of planar lamination, namely, silty graded planar lamination(SGPL), silt-clay graded planar lamination(SCGPL), silt-clay interlaminated planar lamination(SCIPL), and paper-like planar lamination(PPL). SGPL is formed by turbidity current with a flow speed less than 15 cm/s. SCGPL is formed by turbidity currents with a flow speed less than 15 cm/s for normal grading type and 15-25 cm/s for alternating grading type. SCIPL has a continuum of sparsely spaced type, closely spaced type, and alternating type, which is formed by bottom current with an increasing flow speed from 15 to 25 cm/s to above 25 cm/s. PPL can be divided into normal grading and composite grading types. The former is formed by vertical settling, while the latter is formed by bottom current with a flow speed of 5-15 cm/s. Vertically, types of planar lamination varied from SGPL to PPL and then SCIPL manifesting the waxing and waning of flow speed with a positive excursion at graptolite biozone Metabolograptus extraordinarius(WF4) and a negative excursion at graptolite biozone Persculptograptus persculptus(LM1). The sudden decrease in flow speed across Linxiang and graptolite biozone Paraorthograptus pacificus(WF3) and the subsequent progressive increase from graptolite biozone Akidograptus ascensus(LM2)to graptolite biozone Demirastrites triangulatus(LM6) and to graptolite biozone Stimulograptus sedgwickii(LM8) during deposition of the Ordovician-Silurian transition succession on the Upper Yangtze Block were linked to th

关键词： Planar lamination Wufeng Formation Longmaxi Formation Ocean circulation Black shale

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