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Fungal diversity notes 1611-1716: taxonomic and phylogenetic contributions on fungal genera and species emphasis in south China

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Fungal Diversity 2023年第5期122卷 161-403页

作者： Indunil C.Senanayake Walter Rossi Marco Leonardi Alex Weir Mark McHugh Kunhiraman C.Rajeshkumar Rajnish K.Verma Samantha C.Karunarathna Saowaluck Tibpromma Nikhil Ashtekar Sreejith K.Ashtamoorthy Sanjay Raveendran Gurmeet Kour Aishwarya Singh Saúl De la Peña-Lastra Antonio Mateos Miroslav Kolařík Vladimír Antonín HanaŠevčíková Fernando Esteve-Raventós Ellen Larsson Fermín Pancorbo Gabriel Moreno Alberto Altés Yolanda Turégano Tian-Ye Du Li Lu Qi-Rui Li Ji-Chuan Kang Sugantha Gunaseelan Kezhocuyi Kezo Malarvizhi Kaliyaperumal Jizhen Fu Milan C.Samarakoon Yusufjon Gafforov Shakhnoza Teshaboeva Pradeep C.Kunjan Arya Chamaparambath Adam Flakus Javier Etayo Pamela Rodriguez-Flakus Mikhail P.Zhurbenko Nimali Ide Silva Danushka S.Tennakoon KPDeepna Latha Patinjareveettil Manimohan KNAnil Raj Mark S.Calabon Abdollah Ahmadpour Zeinab Heidarian Zahra Alavi Fatemeh Alavi Youbert Ghosta Razmig Azizi Mei Luo Min-Ping Zhao Nuwan D.Kularathnage Li Hua Yun-Hui Yang Chun-Fang Liao Hai-Jun Zhao Anis S.Lestari Subashini C.Jayasiri Feng-Ming Yu Lei Lei Jian-Wei Liu Omid Karimi Song-Ming Tang Ya-Ru Sun Yong Wang Ming Zeng Zin H.Htet Benedetto T.Linaldeddu Artur Alves Alan J.L.Phillips Carlo Bregant Lucio Montecchio AndréDe Kesel Vincent P.Hustad Andrew N.Miller Anna G.Fedosova Viktor Kučera Mubashar Raza Muzammil Hussain Yan-Peng Chen Vinodhini Thiyagaraja Deecksha Gomdola Achala R.Rathnayaka Asha J.Dissanayake Nakarin Suwannarach Sinang Hongsanan Sajeewa S.N.Maharachchikumbura Lakmali S.Dissanayake Nalin N.Wijayawardene Rungtiwa Phookamsak Saisamorn Lumyong E.B.Gareth Jones Neelamanie Yapa Dhanushka N.Wanasinghe Ning Xie Mingkwan Doilom Ishara S.Manawasinghe Jian-Kui(Jack)Liu Qi Zhao Biao Xu Kevin D.Hyde Jiage Song Innovative Institute for plant Health/key laboratory of Green Prevention and Control On Fruits and Vegetables in South China Ministry of Agriculture and Rural AffairsZhongkai University of Agriculture and EngineeringHaizhu DistrictGuangzhou 510225GuangdongChina Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand Guangdong Provincial key laboratory for plant Epigenetics College of Life Science and OceanographyShenzhen University3688Nanhai AvenueNanshanShenzhen 518055GuangdongChina Sect.Environmental Sciences Department MeSVAUniversity of L’AquilaVia Vetoio67100 CoppitoAQItaly Department of Environmental Biology SUNY-ESF241 Illick Hall1 Forestry DriveSyracuseNY 13210USA National Fungal Culture Collection of India MACS Agharkar Research InstitutePuneMaharashtra 411004India Department of plant pathology Punjab Agricultural UniversityLudhianaPunjab 141004India Center for Yunnan Plateau Biological Resources Protection and Utilization College of Biological Resource and Food EngineeringQujing Normal UniversityQujing 655011YunnanChina Department of Forest Ecology Kerala Forest Research InstitutePeechiThrissurKerala 680653India Department of Botany The American CollegeTallakkulamMaduraiTamil Nadu 625002India Department of Zoology Savitribai Phule Pune UniversityGaneshkhind RdGaneshkhindPuneMaharashtra 411007India University of Santiago de Compostela 15782 Santiago de CompostelaSpain Sociedad Micológica Extremeña C/Sagitario 1410001 CáceresSpain Institute of Microbiology of the Czech Academy of Sciences Vídeňská108314220 Prague 4Czech Republic Department of Botany Moravian MuseumZelnýtrh 665937 BrnoCzech Republic Department of Life Sciences(Botany Unit) University of Alcalá28805 Alcaláde HenaresMadridSpain Biological and Enviromental Sciences University of Gothemburgand Gothemburg Global Biodiversity CentreBox 46140530 GöteborgSweden Madrid Mycological Society Real Jardín BotánicoC/Claudio Moyano 128014 MadridSpain State Ke

This article is the 15th contribution in the Fungal Diversity Notes series,wherein 115 taxa from three phyla,nine classes,28 orders,48 families,and 64 genera are *** taxa described and illustrated in the present study include a new family,five new genera,61 new species,five new combinations,one synonym,one new variety and 31 records on new hosts or new geographical *** *** introduced and accommodated in *** new genera introduced in this study are Ageratinicola,Kevinia,Pseudomultiseptospora(Parabambusicolaceae),Marasmiellomycena,and Vizzinia(Porotheleaceae).Newly described species are Abrothallus altoandinus,Ageratinicola kunmingensis,Allocryptovalsa aceris,Allophoma yuccae,Apiospora cannae,***,***,Boeremia wisteriae,Calycina papaeana,Clypeo-coccum lichenostigmoides,Coniochaeta riskali-shoyakubovii,Cryphonectria kunmingensis,Diaporthe angustiapiculata,***,***,Diatrypella guangdongense,Dothiorella franceschinii,Endocalyx phoenicis,Epicoc-cum terminosporum,Fulvifomes karaiensis,***,Ganoderma ghatensis,Hysterobrevium baoshanense,Inocybe avellaneorosea,***,Jahnula oblonga,Kevinia lignicola,Kirschsteiniothelia guangdongensis,laboulbenia caprina,***,***,***,***,***,***,***,***,Laccaria rubriporus,Lasiodiplodia morindae,Lyophyllum agnijum,Marasmiellomycena pseudoomphaliiformis,Melomastia beihaiensis,Nemania guangdongensis,Nigrograna thailandica,Nigrospora ficuum,Oxydothis chinensis,***,Petriella thailandica,Phaeoacremonium chinensis,Phialocephala chinensis,Phytophthora debattistii,Polyplosphaeria nigrospora,Pronectria loweniae,Seriascoma acutispora,Setoseptoria bambusae,Stictis anomianthi,Tarzetta tibetensis,Tarzetta urceolata,Tetraploa obpyriformis,Trichoglossum beninense,and Tricoderma *** provide an emendation for Urnula ailaoshanensis Agaricus duplocingulatoides *** i

关键词： Agaricomycetes Ascomycota Basidiomycota Dothideomycetes Eurotiomycetes Fungal diversity Geoglossomycetes Geographical distribution Host records Incertae sedis laboulbeniomycetes Lecanoromycetes Leotiomycetes Novel taxa New combination Oomycota Peronosporea Pezizomycetes Phylogeny Sordariomycetes South Chinese fungi Taxonomy

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Orthotopic transplantation model of human gastrointestinal cancer and detection of micrometastases

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World Journal of Gastroenterology 2001年第3期7卷 381-386页

作者： Jun Hui Cui~1 Uwe Krueger~2 Doris Henne-Bruns~2 Bemd Kremer~2 Holger Kalthoff~2 ~1Department of General Surgery,First Affiliated Hospital,College of Medicine,Zhejiang University,Hangzhou 310003,Zhejiang province,China ~2Department of General Surgery,Christian-Albrechts-University,Kiel,GermanyDr.Jun Hui Cui graduated from Zhejiang Medical University in 1984,earned master degree in 1990,studied in the Surgical Department of Kiel University and worked in the lab of Molecular Oncology of Kiel University from 1994-1997achieved M.D.from Kiel University.Germany,now associate professor of surgery,specialized in colorectal oncology.Adviser of graduated student for master degree,having 20 publications published in key Chinese or English journals. Department of General Surgery First Affiliated Hospital College of Medicine Zhejiang University 79 Qingchun Road Hangzhou 310003 Zhejiang ProvinceChina. Cjhui@***

AIM: To establish a relevant animal model of human gastrointestinal cancer, which can be used for repetitive investigations, so as to improve our understanding and management of carcinogenesis and cancer metastasis. METHODS: Intact tissues of human colorectal and pancreatic cancers were transplanted in nude mice. The biological characteristics of the original and the corresponding transplanted tumors were investigated by HE staining, PAS staining and immunostaining. The metastases in the livers and lungs of nude mice were investigated by immunostaining with biotinylated mab KL-1 and by RT-PCR using CK20 specific primers. RESULTS: There were totally 9 of 16 surgical specimens growing in nude mice subcutaneously and/or orthotopically (4 of 6 colorectal and 5 of 10 pancreatic cancer). Tumor cell content of the specimens and freezing of tissue specimens are important factors influencing the growth of transplanted tumor. In the group of fresh tumor tissues with greater than 50% tumor cell content, the success rate of the transplantation was 100% (3 cases of pancreatic cancer and 3 cases of colorectal cancer). The orthotopically trans-planted tumors resemble the original tumor morphologically and biologically, including TAA expression such as CEA by immunohistochemistry, and CEA level in the serum of mice. Ki-67 labeling index and the expression of TAA especially K-ras, 17-1A and RA-96, are associated with the potential of tumor growth in nude mice. Micrometastases in the lungs and livers of tumor bearing mice can be detected by immunostaining with biotinylated mab KL-1 and CK20-specific RT-PCR. CONCLUSION: An orthotopic transplantation model for human colon and pancreatic cancer in nude mice has been set up. We have also established sensitive detection methods with CK-immunohistochemistry and CK20-RT-PCR to study xenotransplanted human cancer and its metastatic cancer cells in the liver and lung of nude mice. This study may be helpful in understanding the mechanism of ca

关键词： Animals Disease Models, Animal Female Gastrointestinal Neoplasms Humans Male Mice Mice, Nude Neoplasm Seeding Neoplasm Transplantation Research Support, Non-U.S. Gov't Transplantation, Heterologous

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Single-atom zinc catalyst for co-production of hydrogen and fine chemicals in soluble biomass solution

Advanced Powder Materials

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Advanced Powder Materials 2022年第4期1卷 99-107页

作者： Jiliang Ma Xinze Li Yancong Li Gaojie Jiao Hang Su Dequan Xiao Shangru Zhai Runcang Sun Liaoning key lab of Lignocellulose Chemistry and BioMaterials Liaoning Collaborative Innovation Center for Lignocellulosic BiorefineryCollege of Light Industry and Chemical EngineeringDalian Polytechnic UniversityDalian116034China Center for Integrative Materials Discovery Department of Chemistry and Chemical EngineeringUniversity of New Haven300 Boston Post RdWest HavenCT06516United States

Single-atom photocatalysts(SAPCs)have attracted great interests due to their remarkable atom utilization efficiency,excellent activity,and selectivity,yet no application in synchronous biorefinery and water ***,efficient SAPCs based on atomically dispersed Zn atoms on carbon nitride(named Zn-mCN)were *** verified that Zn-mCN has widened adsorption range of visible-light and lowered ability of electron-hole recombination,leading to excellent photocatalytic redox activity for synchronous biorefinery and water splitting to co-produce lactic acid(selectivity up to 91.0%)and hydrogen(-15898.8μmolg^(-1)h^(-1)).This system has excellent universality for small-molecule monosaccharides and macromolecular *** experiments showed that h^(+),1O2,·O_(2)-and·OH can promote the simultaneous production of lactic acid and *** work realized full utilization of whole redox reaction and provided a novel strategy for efficient and concomitant production of hydrogen and value-added chemicals from biomass-derived feedstocks aqueous solutions.

关键词： Biorefinery Single-atom photocatalyst Photocatalysis Hydrogen Co-production

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Water-soluble chitosan promotes remediation of Pb-contaminated soil by Hylotelephium spectabile

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Frontiers of Environmental Science & Engineering 2024年第7期18卷 109-122页

作者： Bingxin Guo Yiwei Zhang Junxing Yang Tianwei Qian Junmei Guo Xiaona Liu Yuan Jiao Tongbin Chen Guodi Zheng Wenjun Li Fei Qi College of Environmental Science and Engineering Taiyuan University of TechnologyShanxi Key Laboratory of Earth Surface Processes and Resource Ecological Security in Fenhe River BasinShanxi Engineering Research Center of Low Carbon Remediation for Water and Soil Pollution in Yellow River BasinJinzhong 030600China Center for Environmental Remediation Institute of Geographic Sciences and Natural Resources ResearchChinese Academy of SciencesBeijing 100101China University of Chinese Academy of Sciences Beijing 100049China Shanxi Transportation Holding Ecological Environment Co. Ltd.Shanxi 030000China Beijing key lab for Source Control Technology of Water Pollution College of Environmental Science and EngineeringBeijing Forestry UniversityBeijing 100083China

Water-soluble chitosan(WSC)has been studied for its ability to mobilize soil Pb and promote the phytoremediation by Hylotelephium spectabile in Pb-contaminated *** aimed to clarify the internal mechanism by which wSC impacts phytoremediation by examining plant growth and Pb accumulation performance of *** as well as the Pb form,functional groups,and mineral phases of Pb-contaminated *** effectively decreased soil pH and activated Pb migration in rhizosphere soils,with a considerable increase in water-soluble and acid-extractable Pb by 29%-102%and 9%-65%,respectively,and a clear decreasing trend in reducible and oxidizable ***-transform infrared spectroscopy revealed a significant increase in amino and hydroxyl groups in the soil generated by *** coordination of Pb with amino and hydroxyl groups may play an important role in the formation of Pb complexes and activation of Pb in *** field trials,the application of WSC significantly increased Pb accumulation in *** by 125.44%,reaching 92 g/hm^(2).Moreover,the organic matter and nitrogen in the soils were increased by WSc,which improved the growth conditions of *** obvious growth inhibition was observed in either the pot or field ***,WSC is a promising chelating agent for mobilizing Pb in ***,WSC can be potentially used to boost ***-mediated phytoremediation of Pb-contaminatedfarmland.

关键词： Phytoremediation Pb-contaminated soil Water-soluble chitosan Hylotelephium spectabile Fourier transform infrared spectroscopy

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Refined families of Dothideomycetes:orders and families incertae sedis in Dothideomycetes

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Fungal Diversity 2020年第6期105卷 17-318页

作者： Sinang Hongsanan Kevin D.Hyde Rungtiwa Phookamsak Dhanushka N.Wanasinghe Eric H.C.McKenzie V.Venkateswara Sarma Robert Lücking Saranyaphat Boonmee Jayarama D.Bhat Ning-Guo Liu Danushka S.Tennakoon Dhandevi Pem Anuruddha Karunarathna Shu-Hua Jiang Gareth E.B.Jones Alan J.L.Phillips Ishara S.Manawasinghe Saowaluck Tibpromma Subashini C.Jayasiri Diana Sandamali Ruvishika S.Jayawardena Nalin N.Wijayawardene Anusha H.Ekanayaka Rajesh Jeewon Yong-Zhong Lu Chayanard Phukhamsakda Asha J.Dissanayake Xiang-Yu Zeng Zong-Long Luo Qing Tian Kasun M.Thambugala Dongqin Dai Milan C.Samarakoon K.W.Thilini Chethana Damien Ertz Mingkwan Doilom Jian-Kui(Jack)Liu Sergio Pérez-Ortega Ave Suija Chanokned Senwanna Subodini N.Wijesinghe Mekala Niranjan Sheng-Nan Zhang Hiran A.Ariyawansa Hong-Bo Jiang Jin-Feng Zhang Chada Norphanphoun Nimali Ide Silva Vinodhini Thiyagaraja Huang Zhang Jadson D.P.Bezerra Ricardo Miranda-González AndréAptroot Hiroyuki Kashiwadani Dulanjalee Harishchandra Emmanuël Sérusiaux Pranami DAbeywickrama Dan-Feng Bao Bandarupalli Devadatha Hai-Xia Wu Kwang Hee Moon Cecile Gueidan Felix Schumm Digvijayini Bundhun Ausana Mapook Jutamart Monkai Chitrabhanu S.Bhunjun Putarak Chomnunti Satinee Suetrong Napalai Chaiwan Monika C.Dayarathne Jing Yang Achala R.Rathnayaka Jian-Chu Xu Jiesheng Zheng Gang Liu Yao Feng Ning Xie Guangdong Provincial key laboratory for plant Epigenetics Shenzhen Key Laboratory of Microbial Genetic EngineeringCollege of Life Science and OceanographyShenzhen UniversityShenzhen 518060People’s Republic of China Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand CAS key laboratory for plant Diversity and Biogeography of East Asia(KLPB) Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanPeople’s Republic of China East and Central Asia Regional Office World Agroforestry Centre(ICRAF)Kunming 650201YunnanPeople’s Republic of China Centre for Mountain Futures(CMF) Kunming Institute of BotanyKunming 650201YunnanPeople’s Republic of China Department of Entomology and plant pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50002Thailand Institute of plant Health Zhongkai University of Agriculture and EngineeringHaizhu DistrictGuangzhou 510225People’s Republic of China World Agroforestry Centre East and Central Asia132 Lanhei RoadKunming 650201YunnanPeople’s Republic of China Manaaki Whenua-Landcare Research Private Mail Bag 92170AucklandNew Zealand Fungal Biotechnology lab Department of BiotechnologySchool of Life SciencesPondicherry UniversityKalapetPondicherry 605014India School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Botanischer Garten und Botanisches Museum Freie Universität BerlinKönigin-Luise-Straße 6-814195 BerlinGermany 13128/1-J Azad Co-Op Housing SocietyCurcaP.O.Goa Velha 403108India Faculty of Agriculture Natural Resources and EnvironmentNaresuan UniversityPhitsanulok 65000Thailand Guizhou key laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006People’s Republic of China School of Life Science and Technology University of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China State key laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesBeijing 100101People’s Republic of C

Numerous new taxa and classifications of Dothideomycetes have been published following the last monograph of families of Dothideomycetes in 2013.A recent publication by Honsanan et *** 2020 expanded information of families in Dothideo-mycetidae and Pleosporomycetidae with modern *** this paper,we provide a refined updated document on orders and families incertae sedis of *** family is provided with an updated description,notes,including figures to represent the morphology,a list of accepted genera,and economic and ecological *** also provide phylogenetic trees for each *** this study,31 orders which consist 50 families are assigned as orders incertae sedis in Dothideomycetes,and 41 families are treated as families incertae sedis due to lack of molecular or morphological *** new order,Catinellales,and four new families,Catinellaceae,Morenoinaceae Neobuelliellaceae and Thyrinulaceae are *** genera(Neobuelliella,Pseudomicrothyrium,Flagellostrigula,Swinscowia,Macroconstrictolumina,Pseudobogoriella,and Schummia)are *** new species(Acrospermum urticae,Bogoriella complexoluminata,Dothiorella ostryae,Dyfrolomyces distoseptatus,Macroconstrictolumina megalateralis,Patellaria microspora,and Pseu-domicrothyrium thailandicum)are introduced base on morphology and phylogeny,together with two new records/reports and five new collections from different *** new combinations are also provided in this paper.

关键词： Abrothallales Ascrospermales Asterinales Botryosphaeriales Catinellales Cladoriellales Collemopsidiales Dyfrolomycetales Eremithallales Eremomycetales Jahnulales Kirschsteiniotheliales Lembosinales Lichenotheliales Microthyriales Minutisphaerales Monoblastiales Murramarangomycetales new family new genera new order new species Parmulariales Patellariales Phaeotrichales Phylogeny Stigmatodiscales Strigulales Superstratomycetales Taxonomy Trypetheliales Tubeufiales Valsariales Venturiales Zeloasperisporiales

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rDNA Sequencing and Preliminary Analysis of Microorganisms from Diseased Edible Fungus Using Non-culture Technology

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plant Diseases and Pests 2014年第6期5卷 13-16页

作者： Yao Qiang Gong Zhiyuan Gao Neng Han Jiandong Wan Luzhang Ren Pengfei Liu Xiao Huang Chunyan Ren Haixia Institute of Agricultural Resources and Environment Shandong Academy of Agricultural Sciences Shandong Provincial key lab of Agricultural Applied Mycology Qingdao Agricultural University

The metagenomic DNA of disease tissue samples from four kinds of major edible fungus was extracted by CTAB method combined with DNA gel recovery kit. The genomie DNA was amplified by polymerase chain reaction using the universal primers of 16S rDNA and 18S rDNA, and then mone, elonal sequenced after ligated and transformed, rDNA sequences of 20 positive clones were selected randomly from each pair of primers for sequence alignment. The results showed that there were two bacterial diseases and two fungul diseases in the samples, respectively.

关键词： Non-culture Edible fungus disease rDNA sequence analysis

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Effects of bacterial population variation caused by antibiotics on bacterial wilt resistance in Eucalyptus urophylla

Effects of bacterial population variation caused by antibiot...

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中国植物病理学会2015年学术年会

作者：申红妙冉隆贤 College of Forestry Agricultural University of Hebei Hebei key lab of Forest Germplasm Resources and Protection Agricultural University of Hebei

Eucalyptus urophylla were subcultured on medium with *** variations of endophytic bacteria in *** were detected and the resistance of treated in vitro seedlings to *** was *** results showed that the proper antibiotics for eliminating indigenous endophytic bacteria in roots of *** were chloramphenicol and ampicillin,with optimal concentrations for elimination of endophytic bacteria at 60 mg/L and 150 mg/L,*** DGGE pattern of endophytic bacteria in seedlings treated with chloramphenicol was significantly different from that of control plants,whereas ampicillin did not cause obvious changes in DGGE profiles among the treated and control eucalypt *** with the control,eucalypt seedlings treated with both antibiotics showed delayed wilting symptoms for 1-2 days,and the incidence of bacterial wilt in seedlings treated with ampicillin was significantly lower than that of control,the incidence treated with chloramphenicol was significantly lower than the control for 6 days then a sharp rise and have no significant difference with the *** results indicate that certain antibiotics could decrease the population of indigenous endophytic bacteria and delay the onset of eucalypt bacterial wilt.

关键词： Eucalyptus urophylla indigenous endophytic bacteria Bacterial wilt antibiotic PCR-DGGE

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Biocontrol of grape downy mildew with endophytic Bacillus subtilis CN181 and transgenic Pseudomonas fluorescens producing 2,4-DAPG

Biocontrol of grape downy mildew with endophytic Bacillus su...

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中国植物病理学会2015年学术年会

作者：焦文哲 SHEN Hong-miao 冉隆贤 College of Forestry Agricultural University of Hebei Hebei key lab of Forest Germplasm Resources and Protection Agricultural University of Hebei

The inhibition effects of endophytic Bacillus subtilis strain CN181,the wild type Pseudomonas fluorescens WCS417 r and its 12 transgenic derivatives with phi constitutively producing 2,4-diacetylphloroglucinol（2,4-DAPG） on sporangia germination of Plasmopara viticola were *** their suppression abilities were tested with detached grape leaves in growth chamber and in fields as *** results showed that strain CN181 and 12 phl-transgenic strains could effectively inhibit the sporangia germination,and the inhibition rates were all over 92.5%.However,the wild type strain WCS417 r presented no inhibition at *** preventive bioassays with detached leaves the control effect of CN181 was 93.1%,and the 12 transgenic derivatives of WCS417 r had significant enhanced suppression effects on grape downy *** them,strain L2c9 was the best with no symptoms,and strains L1d6,L2d6 and L3d6 also presented good suppression effects,with control efficacies at more than 95%.The control effects of the other 8 strains were from 80%to 93%.The parental strain WCS417 r exhibited no significant control effect compared with that of the control,indicating that the phl-transgenic expression product,i.e.2,4-DAPG,had a strong inhibitory effect on grape downy *** the field tests,results showed that CN181,L1d6,L2c9,L2d6 and L3d6 all had excellent preventive effects on grape down *** strains showed curative effects as well,with control effects at above 39.7%.This research demonstrated that endophytic Bacillus strain CN181 and 2,4-DAPG produced by the transgenic strains could be developed as biocontrol agents in the management of grape downy mildew in the future.

关键词： Bacillus subtilis Biological control 2,4-DAPG,Endophytic bacteria Plasmopara viticola

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Taxonomy and phylogeny of dematiaceous coelomycetes

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Fungal Diversity 2016年第2期77卷 1-316页

作者： Nalin N.Wijayawardene Kevin D.Hyde Dhanushka N.Wanasinghe Moslem Papizadeh Ishani D.Goonasekara Erio Camporesi D.Jayarama Bhat Eric H.C.McKenzie Alan J.L.Phillips Paul Diederich Kazuaki Tanaka Wen Jing Li Narumon Tangthirasunun Rungtiwa Phookamsak Dong-Qin Dai Asha J.Dissanayake Gothamie Weerakoon Sajeewa S.N.Maharachchikumbura Akira Hashimoto Misato Matsumura Ali HBahkali Yong Wang Department of plant pathology Agriculture CollegeGuizhou UniversityGuiyang 550025People’s Republic of China School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Center of Excellence in Fungal Research and School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand key laboratory for plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of Sciences132 Lanhei RoadKunming 650201People’s Republic of China World Agroforestry Centre East and Central Asia132 Lanhei RoadKunming 650201YunnanPeople’s Republic of China Microorganisms Bank Iranian Biological Resource Center(IBRC)Academic Center for EducationCulture and Research(ACECR)TehranIran A.M.B.Gruppo Micologico Forlivese Antonio CicognaniVia Roma 18ForlìItaly A.M.B.Circolo Micologico Giovanni CariniC.P.314BresciaItaly Societàper gli Studi Naturalistici della Romagna C.P.144BagnacavalloRAItaly No.128/1-J Azad Housing SocietyCurcaP.O.Goa Velha 403108India Department of Botany Goa UniversityGoa 403206India Manaaki Whenua Landcare Research Private Bag 92170AucklandNew Zealand Faculty of Sciences Biosystems and Integrative Sciences Institute(BioISI)University of LisbonCampo Grande1749-016 LisbonPortugal Musée national d’histoire naturelle 25 rue MunsterL-2160 LuxembourgLuxembourg Faculty of Agriculture and Life Science Hirosaki University3 Bunkyo-choHirosakiAomori 036-8561Japan laboratoire Interdisciplinaire des Energies de Demain(LIED) UniversitéParis Diderot5 rue Thomas-MannParis 75013France Guizhou key laboratory Agro-Bioengineering Guizhou UniversityGuiyangGuizhou 550025People’s Republic of China Center for Research and Development of Fine Chemicals of Guizhou University Guiyang 550025People’s Republic of China Scientific Affiliate Integrative Research CenterScience&EducationThe Field MuseumChicagoILUSA Guizhou key laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesXiaohe DistrictGuiyang CityGuizhou Province 550006People’s R

t Coelomycetous fungi are an artificial taxonomic group which produce conidia inside a cavity *** comprise about,1000 genera and 7000 species,which can be endophytic,pathogenic or *** classification of coelomycetes was previously based on morphology,such as the shape of conidiomata and mode of conidiogenesis,while it was treated as a distinct group *** based taxonomic studies has been used to accommodate asexual fungi in a natural classification system,resolve generic boundaries of polyphyletic genera and species complexes,as well as establish asexual-sexual ***,most of genera lack sequence data,thus,morphology based identification is still important when introducing new genera or *** this paper we illustrate,describe,and provide taxonomic notes for 235 dematiaceous coelomycetous genera,including five new genera ***,Didymellocamarosporium,Melanocamarosporium,Melnikia and *** analyses of combined sequence data are provided to show placements of dematiaceous coelomycetes in Dothideomycetes,Leotiomycetes and ***-hundred and fifty-two(65%)of genera have sequence data,thus,their taxonomic placement in a natural classification system,is listed as an ***,83 genera still lack sequence data,hence,they are treated as Ascomycota,genera incertae *** addition,separate analyses are provided where better taxonomic resolution is needed.

关键词： Asexual fungi Conidiogenesis Morphology Multi-gene analyses

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sRNAminer:多功能的植物小RNA分析工具

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Science Bulletin 2024年第6期69卷 784-791页

作者：李冠良陈程杰陈佩珂 Blake C.Meyers 夏瑞 State key laboratory for Conservation and Utilization of Subtropical Agro-Bioresources College of HorticultureSouth China Agricultural UniversityGuangzhou 510640China Guangdong laboratory for Lingnan Modern Agriculture South China Agricultural UniversityGuangzhou 510640China key laboratory of Biology and Germplasm Enhancement of Horticultural Crops in South China Ministry of Agriculture and Rural AffairsSouth China Agricultural UniversityGuangzhou 510640China Center Saint LouisMO 63132USA Division of plant Science and Technology University of Missouri-ColumbiaColumbiaMO 65211USA

Small RNAs(sRNAs),found extensively in plants,play an essential role in plant growth and *** various sRNA analysis tools have been developed for plants,the use of most of them depends on programming and command-line environments,which is a challenge for many wet-lab ***,current sRNA analysis tools mostly focus on the analysis of certain type of sRNAs and are resource-intensive,normally demanding an immense amount of time and effort to learn the use of numerous tools or scripts and assemble them into a workable pipeline to get the final ***,we present sRNAminer,a powerful stand-alone toolkit with a user-friendly interface that integrates all common functions for the analysis of three major types of plant sRNAs:microRNAs(miRNAs),phased small interfering RNAs(phasiRNAs),and heterochromatic siRNAs(hc-siRNAs).We constructed a curated or"golden"set of MIRNA and PHAS loci,which was used to assess the performance of sRNAminer in comparison to other existing *** results showed that sRNAminer outperformed these tools in multiple aspects,highlighting its *** addition,to enable an efficient evaluation of sRNA annotation results,we developed Integrative Genomics Viewer(IGV)-sRNA,a modified genome browser optimized from IGV and we incorporated it as a functional module in ***-sRNA can display a wealth of sRNA-specific features,enabling a more comprehensive understanding of sRNA *** and IGV-sRNA are both platform-independent software that can be run under all operating *** are now freely available at https://***/kli28/sRNAminer and https://***/CJchen/IG V-sRNA.

关键词： sRNAminer sRNA analysis miRNA PhasiRNA hc-siRNA IGV-sRNA

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