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Rumen microbiota succession throughout the perinatal period and its association with postpartum production traits in dairy cows:A review

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Animal Nutrition 2024年第3期 17-26页

作者： Xiaowei Zhao Yangdong Zhang Ashikur Rahman Meiqing Chen Ning Li Tao Wu Yunxia Qi Nan Zheng Shengguo Zhao Jiaqi Wang state key laboratory of Animal Nutrition and Feeding Institute of Animal SciencesChinese Academy of Agricultural SciencesBeijing 100193China Anhui key laboratory of Livestock and Poultry Product Safety Engineering Institute of Animal Husbandry and Veterinary MedicineAnhui Academy of Agricultural SciencesHefei 230031China Xinjiang Agricultural University Urumqi 830052China

The transition period for dairy cows usually refers to the 3 weeks pre-calving to the 3 weeks *** this period,dairy cows undergo metabolic and physiological adaptations because of their susceptibility to metabolic and infectious *** feeding management under these circumstances may adversely affect the health and subsequent production performance of the *** to long-term adaptation and evolution,the rumen has become a unique ecosystem inhabited by a complex microbial community closely associated with its natural *** components are metabolized by the rumen microbiota,and volatile fatty acids and microbial protein products can be used as precursor substances for synthesizing meat and milk *** successful transition of perinatal dairy cows includes changes in diet,physiology,and the rumen *** microbial profiles have been confirmed to be heritable and repairable;however,adverse circumstances affect rumen microbial composition,host digestion and metabolism,as well as postpartum production traits of dairy cows for a certain *** evidence indicates a close relationship between the rumen microbiota and animal ***,changes in rumen microbes during the transition period and the intrinsic links between the microbiota and host postpartum phenotypic traits need to be better understood to optimize production performance in ruminants.

关键词： Dairy cow Perinatal period Rumen microbiota Production trait

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Co-occurrence of per- and polyfluoroalkyl substances, heavy metals and polycyclic aromatic hydrocarbons and their composite impacts on microbial consortium in soil: A field study

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Pedosphere 2024年第4期34卷 736-748页

作者： Meng ZHANG Qing WANG Xin SONG Mukhtiar ALI Zhiwen TANG Xin LIU Zhuanxia ZHANG Shurong MA Jinhui BI Zhongyuan LI key laboratory of Saline-Alkali Vegetation Ecology Restoration Northeast Forestry UniversityHarbin 150040China key laboratory of Soil Environment and Pollution Remediation Institute of Soil ScienceChinese Academy of SciencesNanjing 210008China University of Chinese Academy of sciences Beijing 100049China Center international Group Co. Ltd.Beijing 101160China China Construction Eighth Engineering Division Corp. Ltd.Shanghai 200122China

This is the first study to report the co-occurrence of per-and polyfluoroalkyl substances(PFASs),heavy metals,and polycyclic aromatic hydrocarbons(PAHs)and their impacts on the native microbial consortium in soil due to the long-term *** PFASs,heavy metals,and PAHs were detected in soil samples collected at 2–6 m below the ground surface at different sampling locations in a steel-making *** total concentrations of PFASs varied from 6.55 to 19.79 ng g^(-1),with perfluorooctane sulfonate(PFOS),perfluorobutane sulfonate,and 6:2 chlorinated polyfluorinated ether sulfonate(alternative of PFOS)being the predominant *** concentrations of arsenic,cadmium,and lead were detected in the ranges of 4.40–1270.00,0.01–8.67,and 18.00–647.00 mg kg^(-1),respectively,and the concentration of total PAHs was detected in the range of 1.02–131.60 mg kg^(-1).The long-term exposure to mixed contaminants of PFASs,heavy metals,and PAHs led to lower richness and diversity of microbial communities in *** soil bacterial communities were mainly composed of Pseudomonas,norank_p_GAL15,Leptothrix,norank_o_Rokubacteriales,and *** between soil environmental factors and microbial communities indicated that cation exchange capacity and total phosphorus were two key factors in shaping the composition of native microbial ***,Arthrobacter,Leptothrix,and Sphingobium were found to be significantly positively correlated with PFAS concentrations,indicating that these genera could tolerate the stress exerted by PFASs,along with the stress imposed due to the presence of heavy metals or/and PAHs.

关键词： arsenic cation exchange capacity mixed contaminant native microbial community perfuorooctane sulfonate total phosphorus

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Pollution and biodegradation of hexabromocyclododecanes:A review

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Frontiers of Environmental Science & Engineering 2020年第1期14卷 35-42页

作者： Ling Huang Syed Bilal Shah Haiyang Hu Ping Xu Hongzhi Tang state key laboratory of microbial metabolism Joint International Research Laboratory of Metabolic and Developmental SciencesSchool of Life Sciences and BiotechnologyShanghai Jiao Tong UniversityShanghai 200240China

Hexabromocyclododecanes(HBCDs)are the most common brominated flame-retardants after polybrominated diphenyl *** can induce cancer by causing inappropriate antidiuretic hormone *** contamination with HBCDs has been detected globally,with concentrations ranging from ng to|*** to degrade HBCDs include physicochemical methods,bioremediation,and *** photodegradation of HBCDs using simulated sunlight or ultraviolet lamps,or chemical catalysts are inefficient and expensive,as is physicochemical ***,bioremediation is considered as the most cost-effective and clean *** date,five bacterial strains capable of degrading HBCDs have been isolated and identified:Pseudomonas ***01,Bacillus ***-sjtu,Achromobacter ***-1,Achromobacter ***-2,and Pseudomonas aeruginosa *** molecular mechanisms of biodegradation of HBCDs are discussed in this *** microbial resources should be explored to increase the resource library in order to identify more HBCD-degrading microbes and functional *** biology methods may be exploited to accelerate the biodegradation capability of existing bacteria,including modification of the degrading strains or functional enzymes,and artificial construction of the degradation *** most potentially useful method is combining microdegradation with physicochemical methods and *** example,exogenous microorganisms might be used to stimulate the adsorption capability of plants for HBCDs,or to utilize an interaction between exogenous microorganisms and rhizosphere microorganisms to form a new rhizosphere microbial community to enhance the biodegradation and absorption of HBCDs.

关键词： Hexabromocyclododecane Biodegradation Bioremediation Phytoremediation Bacterium

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Indole methylation protects diketopiperazine configuration in the maremycin biosynthetic pathway

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Science China Chemistry 2016年第9期59卷 1224-1228页

作者： Yingxia Lan Yi Zou Tingting Huang Xiaozheng Wang Nelson L. Brock Zixin Deng Shuangjun Lin state key laboratory of microbial metabolism:joint international laboratory on metabolic & developmental sciences School of Life Sciences & Biotechnology Shanghai Jiao Tong University Shanghai 200030 China

The maremycin biosynthetic gene cluster has been identified in Streptomyces sp. B9173. Comparative metabolic profiling with knockout mutant strains led to the identification of new products correlated to the maremycin biosynthesis, in particular the ＂demethyl＂-maremycins with an unexpected D-tryptophan unit. A biosynthetic pathway for the maremycins is proposed and plausible reasoning for tryptopban epimerization in the demethylmaremycin biosynthesis is also provided.

关键词： biosynthesis maremycin N-methylation methyltransferase epimerization

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Dynamic changes of rumen microbiota and serum metabolome revealed increases in meat quality and growth performances of sheep fed bio‑fermented rice straw

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Journal of Animal Science and Biotechnology 2024年第3期15卷 1207-1226页

作者： Yin Yin Kyawt Min Aung Yao Xu Zhanying Sun Yaqi Zhou Weiyun Zhu Varijakshapanicker Padmakumar Zhankun Tan Yanfen Cheng laboratory of Gastrointestinal Microbiology National Center for International Research on Animal Gut NutritionNanjing Agricultural UniversityNanjing 210095China Department of Animal Nutrition University of Veterinary ScienceNay Pyi Taw 15013Myanmar international Livestock Research Institute Nairobi 00100Kenya College of Animal Science Tibet Academy of Agricultural and Animal Husbandry SciencesLhasa 850000China state key laboratory of Grassland Agro‑Ecosystems Center for Grassland MicrobiomeCollege of Pastoral Agriculture Science and TechnologyLanzhou UniversityLanzhou 730000China

Background Providing high-quality roughage is crucial for improvement of ruminant production because it is an essential component of their *** previous study showed that feeding bio-fermented rice straw(BF)improved the feed intake and weight gain of ***,it remains unclear why feeding BF to sheep increased their feed intake and weight ***,the purposes of this research were to investigate how the rumen micro-biota and serum metabolome are dynamically changing after feeding BF,as well as how their changes influence the feed intake,digestibility,nutrient transport,meat quality and growth performances of *** growing Hu sheep were allocated into 3 groups:alfalfa hay fed group(AH:positive control),rice straw fed group(RS:negative control)and BF fed group(BF:treatment).Samples of rumen content,blood,rumen epithelium,muscle,feed offered and refusals were collected for the subsequent *** Feeding BF changed the microbial community and rumen fermentation,particularly increasing(P<0.05)relative abundance of Prevotella and propionate production,and decreasing(P<0.05)enteric methane *** histomorphology(height,width,area and thickness)of rumen papillae and gene expression for carbohydrate trans-port(MCT1),tight junction(claudin-1,claudin-4),and cell proliferation(CDK4,Cyclin A2,Cyclin E1)were improved(P<0.05)in sheep fed ***,serum metabolome was also dynamically changed,which led to up-regulating(P<0.05)the primary bile acid biosynthesis and biosynthesis of unsaturated fatty acid in sheep fed *** a result,the higher(P<0.05)feed intake,digestibility,growth rate,feed efficiency,meat quality and mono-unsaturated fatty acid concentration in muscle,and the lower(P<0.05)feed cost per kg of live weight were achieved by feeding *** Feeding BF improved the growth performances and meat quality of sheep and reduced their feed ***,bio-fermentation of rice straw could be an innovative way for improving rum

关键词： Bio-fermentation Growth rate Meat quality Metabolome Microbiota Rice straw

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The crosstalk between enteric nervous system and immune system in intestinal development,homeostasis and diseases

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Science China(Life sciences) 2024年第1期67卷 41-50页

作者： Xindi Wang Chenbo Ding Hua-Bing Li Shanghai Institute of Immunology State Key Laboratory of Oncogenes and Related GenesShanghai Jiao Tong University School of MedicineShanghai 200025China Shanghai Jiao Tong University School of Medicine-Yale Institute for Immune metabolism Shanghai Jiao Tong University School of MedicineShanghai 200025China

The gut is the largest digestive and absorptive organ,which is essential for induction of mucosal and systemic immune responses,and maintenance of metabolic-immune *** intestinal components contain the epithelium,stromal cells,immune cells,and enteric nervous system(ENS),as well as the outers,such as gut microbiota,metabolites,and *** dyshomeostasis of intestinal microenvironment induces abnormal intestinal development and functions,even colon diseases including dysplasia,inflammation and *** recent studies have identified that ENS plays a crucial role in maintaining the immune homeostasis of gastrointestinal(GI)*** crosstalk between ENS and immune cells,mainly macrophages,T cells,and innate lymphoid cells(ILCs),has been found to exert important regulatory roles in intestinal tissue programming,homeostasis,function,and *** this review,we mainly summarize the critical roles of the interactions between ENS and immune cells in intestinal homeostasis during intestinal development and diseases progression,to provide theoretical bases and ideas for the exploration of immunotherapy for gastrointestinal diseases with the ENS as potential novel targets.

关键词： enteric nervous system macrophages T cells innate lymphoid cells neuro-immune interactions

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MSC-mediated mitochondrial transfer restores mitochondrial DNA and function in neural progenitor cells of Leber’s hereditary optic neuropathy

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Science China Life sciences 2024年

作者： Rui Wang Feixiang Bao Manjiao Lu Xiaoyun Jia Jiahui Xiao Yi Wu Qingjiong Zhang Xingguo Liu joint School of Life sciences Guangzhou Institutes of Biomedicine and HealthChinese Academy of SciencesGuangzhou Medical University Centre for Regenerative Medicine and Health Hong Kong Institute of Science&InnovationChinese Academy of Sciences Guangdong Provincial key laboratory of Stem Cell and Regenerative Medicine CUHK-GIBH Joint Research Laboratory on Stem Cells and Regenerative MedicineGIBH-HKU Guangdong-Hong Kong Stem Cell and Regenerative Medicine Research CentreInstitute for Stem Cell and RegenerationGuangzhou Institutes of Biomedicine and HealthChinese Academy of Sciences University of Chinese Academy of sciences state key laboratory of Ophthalmology Zhongshan Ophthalmic CenterSun Yat-sen UniversityGuangdong Provincial Key Laboratory of Ophthalmology and Visual Science

Leber’s hereditary optic neuropathy (LHON) is a debilitating mitochondrial disease associated with mutations in mitochondrial DNA(mtDNA).Unfortunately,the available treatment options for LHON patients are limited due to challenges in mitochondrial *** our study,we reprogramming LHON urine cells into induced pluripotent stem cells (iPSCs) and differentiating them into neural progenitor cells (NPCs) and neurons for disease *** research revealed that LHON neurons exhibited significantly higher levels of mtDNA mutations and reduced mitochondrial function,confirming the disease ***,through co-culturing LHON iPSC-derived NPCs with mesenchymal stem cells (MSCs),we observed a remarkable rescue of mutant mtDNA and a significant improvement in mitochondrial metabolic function in LHON *** findings suggest that co-culturing with MSCs can enhance mitochondrial function in LHON NPCs,even after their differentiation into *** discovery holds promise as a potential therapeutic strategy for LHON patients.

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Soil type and wetting intensity control the enhancement extent of N_(2)O efflux in soil with drought and rewetting cycles

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international Soil and Water Conservation Research 2024年第1期12卷 137-144页

作者： Panpan Jiao Lei Yang Zhongwu Li Peng Zheng Xiaodong Nie School of Geographical sciences Hunan Normal UniversityChangsha 410081China state key laboratory of Soil Erosion and Dryland Farming on the Loess Plateau The Research Center of Soil and Water Conservation and Ecological EnvironmentChinese Academy of Sciences and Ministry of EducationYangling 712100China Institute of Soil and Water Conservation Chinese Academy of Sciences and Ministry of Water ResourcesYangling 712100China University of Chinese Academy of sciences Beijing 100049China key laboratory of Soil Environment and Pollution Remediation Institute of Soil ScienceChinese Academy of SciencesNanjing 210008China

Climate change alters the intensity and frequency of drought and rewetting(D/W)events;however,the influence patterns of D/W on soil N_(2)O efflux in the water-limited area were not fully ***,the impacts of D/W cycles varying in different extent of rewetting and frequency to N_(2)O efflux in two kinds of soil on the Loess Plateau were *** incubation conditions consisted of 1)D/W treatments with four 7-day cycles from 10%water holding capacity(WHC)to 60%WHC or 90%WHC,2)constant moisture of 60%WHC and 90%*** pulse of N_(2)O efflux rate under 10-60%WHC treatment was higher than that under 10-90%WHC treatment in calcic cambisols,while opposite trend was observed in earth-cumuli-orthic ***,the pulse of N_(2)O efflux rate decreased as cycle number increased for different wetting intensities and soil *** direct N_(2)O efflux under 10-60%WHC and 10-90%WHC treatments were 5.49 and 1.89μg N_(2)O-N g^(-1)soil in calcic cambisols,with those being 1.92 and 10.85μg N_(2)O-N g^(-1)soil in earth-cumuli-orthic anthrosols,*** N loss in earth-cumuli-orthic anthrosols was approximately 5.74 times greater than that in calcic cambisols under 10-90%WHC treatment,whereas the N loss under 10-60%WHC treatment was about 2.86 times greater in calcic cambisols than that in earth-cumuli-orthic *** study suggested that extreme rainfall events can enhance the N_(2)O efflux and N loss in agricultural soils on the Loess Plateau in terms of soil type and wetting intensity,which should not be ignored in the N fertilizer management.

关键词： Drought/rewetting cycles N_(2)O efflux Wetting intensity microbial biomass N Dissolved organic N Loess plateau

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Green manuring relocates microbiomes in driving the soil functionality of nitrogen cycling to obtain preferable grain yields in thirty years

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Science China(Life sciences) 2024年第3期67卷 596-610页

作者： Guopeng Zhou Kunkun Fan Songjuan Gao Danna Chang Guilong Li Ting Liang Hai Liang Shun Li Jiudong Zhang Zongxian Che Weidong Cao state key laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China/Institute of Agricultural Resources and Regional Planning Chinese Academy of Agricultural SciencesBeijing 100081China state key laboratory of Soil and Sustainable Agriculture Institute of Soil ScienceChinese Academy of SciencesNanjing 210008China College of Resources and Environmental sciences Nanjing Agricultural UniversityNanjing 210095China Institute of Soil&Fertilizer and Resource&Environment Jiangxi Academy of Agricultural SciencesNanchang 330200China Institute of Soil and Fertilizer and Water-saving Agriculture Gansu Academy of Agricultural SciencesLanzhou 730070China

Fertilizers are widely used to produce more food, inevitably altering the diversity and composition of soil organisms. The role of soil biodiversity in controlling multiple ecosystem services remains unclear, especially after decades of fertilization. Here, we assess the contribution of the soil functionalities of carbon(C), nitrogen(N), and phosphorus(P) cycling to crop production and explore how soil organisms control these functionalities in a 33-year field fertilization experiment. The long-term application of green manure or cow manure produced wheat yields equivalent to those obtained with chemical N, with the former providing higher soil functions and allowing the functionality of N cycling(especially soil N mineralization and biological N fixation) to control wheat production. The keystone phylotypes within the global network rather than the overall microbial community dominated the soil multifunctionality and functionality of C,N, and P cycling across the soil profile(0–100 cm). We further confirmed that these keystone phylotypes consisted of many metabolic pathways of nutrient cycling and essential microbes involved in organic C mineralization, N_(2)O release, and biological N fixation. The chemical N, green manure, and cow manure resulted in the highest abundances of amoB, nifH, and GH48 genes and Nitrosomonadaceae,Azospirillaceae, and Sphingomonadaceae within the keystone phylotypes, and these microbes were significantly and positively correlated with N_(2)O release, N fixation, and organic C mineralization, respectively. Moreover, our results demonstrated that organic fertilization increased the effects of the network size and keystone phylotypes on the subsoil functions by facilitating the migration of soil microorganisms across the soil profiles and green manure with the highest migration rates. This study highlights the importance of the functionality of N cycling in controlling crop production and keystone phylotypes in regulating soil functions, an

关键词： soil biodiversity soil multifunctionality element cycling keystone phylotypes

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Abnormal adipose tissue-derived microbes drive metabolic disorder and exacerbate postnatal growth retardation in piglet

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Life metabolism 2024年第2期3卷 55-69页

作者： Tongxing Song Ming Qi Yucheng Zhu Nan Wang Zhibo Liu Na Li Jiacheng Yang Yanxu Han Jing Wang Shiyu Tao Zhuqing Ren Yulong Yin Jinshui Zheng Bie Tan College of Animal Science and Technology Huazhong Agricultural UniversityWuhanHubei 430070China College of Animal Science and Technology Hunan Agricultural UniversityChangshaHunan 410000China laboratory of Animal Nutritional Physiology and metabolic Process CAS Key Laboratory of Agro-ecological Processes in Subtropical RegionNational Engineering Laboratory for Pollution Control and Waste Utilization in Livestock and Poultry ProductionInstitute of Subtropical AgricultureChinese Academy of SciencesChangshaHunan 410125China state key laboratory of Agricultural Microbiology Huazhong Agricultural UniversityWuhanHubei 430070China Hubei key laboratory of Agricultural Bioinformatics Huazhong Agricultural UniversityWuhanHubei 430070China

Postnatal growth retardation(PGR)frequently occurs during early postnatal development of piglets and induces high *** date,the mechanism of PGR remains poorly *** tissue-derived microbes have been documented to be associated with several disorders of metabolism and body ***,the connection between microbial disturbance of adipose tissue and pig PGR remains ***,we investigated piglets with PGR and found that the adipose tissue of PGR piglets was charac-terized by metabolism impairment,adipose abnormality,and specific enrichment of culturable bacteria from *** of Sphingomonas paucimobilis,a species of Sphingomonas genus from the alphaproteobacteria,induced PGR in ***,this bacterium could also lead to metabolic disorders and susceptibility to acute stress,resulting in weight loss in ***,multi-omics analysis indicated the changes in lipid metabolism as a response of adipose tissue to abnormal microbial *** experimental tests proved that one of the altered lipids phosphatidylethanolamines could rescue the metabolism disorder and growth retardation,thereby suppressing the amount of Sphingomonas in the adipose ***,these results highlight that the microbe–host crosstalk may regulate the metabolic function of adipose tissue in response to PGR.

关键词： adipose tissue microbe metabolic disorder postnatal growth retardation piglet

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