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Functional characterization of Bmcap in uric acid metabolism in the silkworm

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Insect science 2024年第1期31卷 147-156页

作者： Linmeng Tang Dehong Yang Zhiwei Liu Yaohui Wang Xu Yang Yujia Liu Dongbin Chen Zheng Tang Yongping Huang Key Laboratory of Insect Developmental and Evolutionary Biology Center for Excellence in Molecular Plant SciencesShanghai Institute of Plant Physiology and EcologyChinese Academy of SciencesShanghaiChina CAS Center for Excellence in Biotic Interactions University of Chinese Academy of SciencesBeijingChina Central Research institute Shanghai Pharmaceuticals Holding Co.Ltd.ShanghaiChina Departments of Neonatology International Peace Maternity and Child Health Hospital of China Welfare InstitutionSchool of MedicineShanghai Jiao Tong UniversityShanghaiChina

After a millennium of domestication,numerous silkworm mutants have emerged that exhibit transparent epidermis,which is caused by abnormally low levels of uric acid.We identified the Bombyx mori gene Bmcap(BMSK0003832)as the homolog of cappuccino,a subunit of the biogenesis of lysosome-related organelles complex-1(BLOC-1)that has been extensively characterized in human,mouse,and insect species,by analyzing the amino acid sequences of putative purine metabolism genes.Using the clustered regularly interspaced palindromic repeats(CRISPR)/CRISPR-associated protein 9 system,we disrupted Bmcap,resulting in decreased uric acid levels in the silkworm epidermis and a translucent skin phenotype.In the Bmcap mutant,the purine metabolism,nitrogen metabolism,pyrimidine metabolism,and membrane system were altered compared to the wild type.Biogenesis of lysosome-related organelle complex genes play a role in the pigmentation and biogenesis of lysosome-related organelles(LROs)in platelets,melanocytes,and megakaryocytes.LROs exhibit unique morphologies and functions in various tissues and cells.Investigation of the Bmcap mutant will enhance our understanding of the uric acid metabolic pathway in silkworms,and this mutant offers a valuable silkworm model for LRO studies.

关键词： BLOC-1 subunit Bombyx mori cappuccino translucent mutation uric acid

From Topological Nodal-Line Semimetals to Quantum Spin Hall Insulators in Tetragonal SnX Monolayers(X=F,Cl,Br,I)

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Chinese Physics Letters 2024年第6期41卷 98-111页

作者：朱晔赵宝薛阳徐玮徐文婷杨中芹 State Key Laboratory of Surface Physics Key Laboratory of Computational Physical Sciences(MOE)and Department of PhysicsFudan UniversityShanghai 200433China Shandong Key Laboratory of Optical communication science and Technology School of Physics Science and Information TechnologyLiaocheng UniversityLiaocheng 252059China School of Physics East China University of Science and TechnologyShanghai 200237China shanghai Qi Zhi institute Shanghai 200030China

Two-dimensional(2D)topological materials have recently garnered significant interest due to their profound physical properties and promising applications for future quantum nanoelectronics.Achieving various topological states within one type of materials is,however,seldom reported.Based on first-principles calculations and tightbinding models,we investigate topological electronic states in a novel family of 2D halogenated tetragonal stanene(T-SnX,X=F,Cl,Br,I).All the four monolayers are found to be unusual topological nodal-line semimetals(NLSs),protected by a glide mirror symmetry.When spin-orbit coupling(SOC)is turned on,T-SnF and TSnCl are still ascertained as topological NLSs due to the remaining band inversion,primarily composed of Sn pxy orbitals,while T-Sn Br and T-SnI become quantum spin Hall insulators.The phase transition is ascribed to moving up in energy of Sn s orbitals and increasing of SOC strengths.The topology origin in the materials is uniformly rationalized through elementary band representations.The robust and diverse topological states found in the 2D T-SnX monolayers position them as an excellent material platform for development of innovative topological electronics.

关键词： topological metals quantum

Characteristics of cell motility during cell collision

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Chinese Physics B 2024年第2期33卷 72-77页

作者：马一凯李娜陈唯 State Key Laboratory of Surface Physics and Department of Physics Fudan UniversityShanghai 200438China China National Center for Bioinformation Beijing 100101China National Genomics data Center Beijing Institute of GenomicsChinese Academy of SciencesBeijing 100101China

Quantitative examination of cellular motion and intercellullar interactions possesses substantial relevance for both biology and medicine.However,the effects of intercellular interactions during cellular locomotion remain under-explored in experimental research.As such,this study seeks to bridge this research gap,adopting Dictyostelium discoideum(Dicty)cells as a paradigm to investigate variations in cellular motion during reciprocal collisions.We aim to attain a comprehensive understanding of how cell interactions influence cell motion.By observing and processing the motion trajectories of colliding cells under diverse chemical environments,we calculated the diffusion coefficient(D)and the persistence time(τ),using mean square displacement.Our analysis of the relationship dynamics between D andτprior to the collisions reveals intricate and non-monotonic alterations in cell movements during collisions.By quantitatively scrutinizing theτtrend,we were able to categorize the cellular responses to interactions under different conditions.Importantly,we ascertained that the effect of cell interactions during collisions in Dicty cells emulates a classical sigmoid function.This discovery suggests that cellular responses might comply with a pattern akin to the Weber–Fechner law.

关键词： cell migration random walk cell-cell interaction

Spatial search weighting information contained in cell velocity distribution

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Chinese Physics B 2024年第2期33卷 522-528页

Cell migration plays a significant role in physiological and pathological processes.Understanding the characteristics of cell movement is crucial for comprehending biological processes such as cell functionality,cell migration,and cell–cell interactions.One of the fundamental characteristics of cell movement is the specific distribution of cell speed,containing valuable information that still requires comprehensive understanding.This article investigates the distribution of mean velocities along cell trajectories,with a focus on optimizing the efficiency of cell food search in the context of the entire colony.We confirm that the specific velocity distribution in the experiments corresponds to an optimal search efficiency when spatial weighting is considered.The simulation results indicate that the distribution of average velocity does not align with the optimal search efficiency when employing average spatial weighting.However,when considering the distribution of central spatial weighting,the specific velocity distribution in the experiment is shown to correspond to the optimal search efficiency.Our simulations reveal that for any given distribution of average velocity,a specific central spatial weighting can be identified among the possible central spatial weighting that aligns with the optimal search strategy.Additionally,our work presents a method for determining the spatial weights embedded in the velocity distribution of cell movement.Our results have provided new avenues for further investigation of significant topics,such as relationship between cell behavior and environmental conditions throughout their evolutionary history,and how cells achieve collective cooperation through cell-cell communication.

关键词： cell migration foraging efficiency random walk spatial search weight

Market-based solution in China to finance the clean from the dirty

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Fundamental Research 2024年第2期4卷 324-333页

作者： Haoqi Qian Rong Ma Libo Wu institute for Global Public Policy Fudan UniversityShanghai 200433China LSE-Fudan Research Centre for Global Public Policy Fudan UniversityShanghai 200433China School of Economics Fudan UniversityShanghai 200433China shanghai institute for Energy and Carbon Neutrality Strategy Fudan UniversityShanghai 200433China

Financial incentives play a key role in promoting renewable energy investments that can help China achieve the‘dual carbon’goal.The national emissions trading scheme(ETS)and the renewable energy portfolio standard(RPS)are two existing market-based policy instruments that can generate stable expected returns for low-carbon projects.This paper studies the interactive distribution effects of these two market-based instruments.We use the micro-level thermal power plant data to investigate the abatement effects of the national ETS,in which the details show that the existing rate-based ETS will result in higher negative impacts on power units,whose installed capacities are smaller than 400 MW.The interactive distribution effects between the two markets will occur when the permit allocation standards of the national ETS become stricter than the existing ones.Provinces in Eastern China and Northern China will face high pressure on costs in both ETS and RPS markets.When the levels of the permit allocation standards are set as 70%of the existing ones and the carbon price is assumed to be 200 yuan/ton in 2030,the annual market size of the national ETS will be nearly 100 billion yuan,and the annual market size is predicted to be 250 billion yuan.In the existing rate-based national ETS,the China Certified Emission Reduction(CCER)mechanism will have an offsetting effect,which should be taken into serious consideration during the policy-making processes in the future.

关键词： Emission trading scheme Renewable energy portfolio standard Green finance Policy interactions China certified emission reduction Distribution effect

A wideband,high-resolution vector spectrum analyzer for integrated photonics

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Light(science & Applications) 2024年第4期13卷 760-771页

作者： Yi-Han Luo Baoqi Shi Wei Sun Ruiyang Chen Sanli Huang Zhongkai Wang Jinbao Long Chen Shen Zhichao Ye Hairun Guo Junqiu Liu International Quantum Academy 518048 ShenzhenChina. Shenzhen institute for Quantum science and Engineering Southern University of Science and Technology518055 ShenzhenChina. Department of Optics and Optical Engineering University of Science and Technology of China230026 HefeiChina. Hefei National Laboratory University of Science and Technology of China230088 HefeiChina. Qaleido Photonics 518048 ShenzhenChina. Key Laboratory of Specialty Fiber Optics and Optical Access Networks Shanghai University200444 ShanghaiChina

The analysis of optical spectra—emission or absorption—has been arguably the most powerful approach for discovering and understanding matter.The invention and development of many kinds of spectrometers have equipped us with versatile yet ultra-sensitive diagnostic tools for trace gas detection,isotope analysis,and resolving hyperfine structures of atoms and molecules.With proliferating data and information,urgent and demanding requirements have been placed today on spectrum analysis with ever-increasing spectral bandwidth and frequency resolution.These requirements are especially stringent for broadband laser sources that carry massive information and for dispersive devices used in information processing systems.In addition,spectrum analyzers are expected to probe the device’s phase response where extra information is encoded.Here we demonstrate a novel vector spectrum analyzer(VSA)that is capable of characterizing passive devices and active laser sources in one setup.Such a dual-mode VSA can measure loss,phase response,and dispersion properties of passive devices.It also can coherently map a broadband laser spectrum into the RF domain.The VSA features a bandwidth of 55.1 THz(1260–1640 nm),a frequency resolution of 471 kHz,and a dynamic range of 56 dB.Meanwhile,our fiber-based VSA is compact and robust.It requires neither high-speed modulators and photodetectors nor any active feedback control.Finally,we employ our VSA for applications including characterization of integrated dispersive waveguides,mapping frequency comb spectra,and coherent light detection and ranging(LiDAR).Our VSA presents an innovative approach for device analysis and laser spectroscopy,and can play a critical role in future photonic systems and applications for sensing,communication,imaging,and quantum information processing.

关键词： spectrum resolution coherent

PriChain: Efficient Privacy-preserving Finegrained Redactable Blockchains in Decentralized Settings

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Chinese Journal of Electronics 2024年

作者： Hongchen GUO Weilin GAN Mingyang ZHAO Chuan ZHANG Tong WU Liehuang ZHU Jingfeng XUE School of Computer science and Technology Beijing Institute of Technology School of Cyberspace science and Technology Beijing Institute of Technology School of Computer and communication Engineering University of Science and Technology Beijing

Recently, redactable blockchain has been proposed and leveraged in a wide range of real systems for its unique properties of decentralization, traceability, and transparency while ensuring controllable on-chain data redaction. However, the development of redactable blockchain is now obstructed by three limitations, which are data privacy breaches, high communication overhead, and low searching efficiency, respectively. In this paper, we propose PriC hain, the first efficient privacy-preserving fine-grained redactable blockchain in decentralized settings. PriChain provides data owners with rights to control who can read and redact on-chain data while maintaining downward compatibility, ensuring the one who can redact will be able to read. Specifically, inspired by the concept of multi-authority attribute-based encryption, we utilize the isomorphism of the access control tree, realizing fine-grained redaction mechanism, downward compatibility, and collusion resistance. With the newly designed structure, PriChain can realize O（n） communication and storage overhead compared to prior O（n2） schemes. Furthermore, we integrate multiple access trees into a tree-based dictionary, optimizing searching efficiency. Theoretical analysis proves that PriC hain is secure against the chosen-plaintext attack and has competitive complexity. The experimental evaluations show that PriChain realizes 10× efficiency improvement of searching and 100× lower communication and storage overhead on average compared with existing schemes.

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Cross-sectional network analysis of plasma proteins/metabolites correlated with pathogenesis and therapeutic response in acute promyelocytic leukemia

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Frontiers of Medicine 2024年第2期18卷 327-343页

作者： Niu Qiao Yizhu Lyu Feng Liu Yuliang Zhang Xiaolin Ma Xiaojing Lin Junyu Wang Yinyin Xie Ruihong Zhang Jing Qiao Hongming Zhu Li Chen Hai Fang Tong Yin Zhu Chen Qiang Tian Saijuan Chen shanghai institute of Hematology State Key Laboratory of Medical GenomicsNational Research Center for Translational Medicine at ShanghaiRuijin Hospital Affiliated to Shanghai Jiao Tong University School of MedicineShanghai200025China Department of Hematology Second Hospital of Dalian Medical UniversityDalian116021China

The treatment of PML/RARA+acute promyelocytic leukemia(APL)with all-trans-retinoic acid and arsenic trioxide(ATRA/ATO)has been recognized as a model for translational medicine research.Though an altered microenvironment is a general cancer hallmark,how APL blasts shape their plasma composition is poorly understood.Here,we reported a cross-sectional correlation network to interpret multilayered datasets on clinical parameters,proteomes,and metabolomes of paired plasma samples from patients with APL before or after ATRA/ATO induction therapy.Our study revealed the two prominent features of the APL plasma,suggesting a possible involvement of APL blasts in modulating plasma composition.One was characterized by altered secretory protein and metabolite profiles correlating with heightened proliferation and energy consumption in APL blasts,and the other featured APL plasma-enriched proteins or enzymes catalyzing plasma-altered metabolites that were potential trans-regulatory targets of PML/RARA.Furthermore,results indicated heightened interferon-gamma signaling characterizing a tumor-suppressing function of the immune system at the first hematological complete remission stage,which likely resulted from therapy-induced cell death or senescence and ensuing supraphysiological levels of intracellular proteins.Overall,our work sheds new light on the pathophysiology and treatment of APL and provides an information-rich reference data cohort for the exploratory and translational study of leukemia microenvironment.

关键词： acute promyelocytic leukemia plasma proteomics plasma metabolomics cross-sectional correlation network pathogenesis treatment

Full-polarization angular spectrum modeling of scattered light modulation

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Photonics Research 2024年第3期12卷 485-490页

作者： RONGJUN SHAO CHUNXU DING YUAN QU LINXIAN LIU QIAOZHI HE YUEJUN WU JIAMIAO YANG School of Electronic Information and Electrical Engineering Shanghai Jiao Tong UniversityShanghai 200240China institute of Marine Equipment Shanghai Jiao Tong UniversityShanghai 200240China School of Automation and Software Engineering Shanxi UniversityTaiyuan 030006China

The exact physical modeling for scattered light modulation is critical in phototherapy,biomedical imaging,and free-space optical communications.In particular,the angular spectrum modeling of scattered light has attracted considerable attention,but the existing angular spectrum models neglect the polarization of photons,degrading their performance.Here,we propose a full-polarization angular spectrum model(fpASM)to take the polarization into account.This model involves a combination of the optical field changes and free-space angular spectrum diffraction,and enables an investigation of the influence of polarization-related factors on the performance of scattered light modulation.By establishing the relationship between various model parameters and macroscopic scattering properties,our model can effectively characterize various depolarization conditions.As a demonstration,we apply the model in the time-reversal data transmission and anti-scattering light focusing.Our method allows the analysis of various depolarization scattering events and benefits applications related to scattered light modulation.

关键词： scattered angular spectrum