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JrATHB-12 mediates JrMYB113 and JrMYB27 to control the anthocyanin levels in different types of red walnut

Journal of Integrative Agriculture 2024年第8期23卷 2649-2661页

作者： Haifeng Xu Guifang Wang Xinying Ji Kun Xiang Tao Wang Meiyong Zhang Guangning Shen Rui Zhang Junpei Zhang Xin Chen Key Laboratory of Huanghuai Protected Horticulture Engineering/National Germplasm Repository of Walnut and Chestnut Shandong Institute of PomologyTai’an 271000China research institute of Forestry Chinese Academy of ForestryBeijing 100091China College of Horticulture and Forestry Tarim UniversityAlaer 843300China

Red walnut has broad market prospects because it is richer in anthocyanins than ordinary ***,the mechanism driving anthocyanin biosynthesis in red walnut is still *** studied two types of red walnut,called red walnut 1(R1),with a red pericarp and seed coat,and red walnut 2(R2),with a red seed coat only.R1 mostly contained cyanidin-3-O-galactoside,while R2 contained a various amounts of cyanidin-3-Ogalactoside,cyanidin-3-O-arabinoside,and *** LDOX-2(LOC109007163)and LDOX-3(LOC109010746)genes,which encode leucoanthocyanidin dioxygenase/anthocyanidin synthase(LDOX/ANS),were preliminarily indicated as the crucial genes for anthocyanin biosynthesis in R1 and R2,*** MYB differential genes analysis showed that MYB27 and MYB113 are specifically expressed in the red parts of R1 and R2,respectively,and they are regarded as candidate regulatory *** expression in Arabidopsis and transient injection in walnut showed that both MYB27 and MYB113 were located in the nucleus and promoted anthocyanin accumulation,while MYB27 promoted the expression of LDOX-2,and MYB113 promoted the expression of LDOX-3and *** one-hybrid and electrophoretic mobility shift assays showed that MYB27 could only bind to the LDOX-2 promoter,while MYB113 could bind to the promoters of both LDOX-3 and *** addition,we also identified an HD-Zip transcription factor,ATHB-12,which is specifically expressed in the *** silencing the expression of ATHB-12,the R2 pericarp turned red,and MYB113 expression *** experiments showed that ATHB-12 could specifically interact with MYB113 and bind to its *** suggests that MYB27controls R1 coloration by regulating LDOX-2,while MYB113 controls R2 coloration by regulating LDOX-3 and UAGT-3,but ATHB-12 can specifically bind to and inhibit the MYB113 of the R2 pericarp so that it becomes *** study reveals the anthocyanin biosynthetic mechanisms in two differ

关键词： JrATHB-12 JrMYB113 JrMYB27 red walnut anthocyanin biosynthesis

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Hyperspectral remote sensing identification of marine oil spills and emulsions using feature bands and double-branch dual-attention mechanism network

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Journal of Oceanology and Limnology 2024年第3期42卷 728-743页

作者： Ning ZHANG Junfang YANG Shanwei LIU Yi MA Jie ZHANG College of Oceanography and Space Informatics China University of PetroleumQingdao 266580China First institute of Oceanography Ministry of Natural ResourcesQingdao 266061China technology innovation Center for Ocean Telemetry Ministry of Natural ResourcesQingdao 266061China

The accurate identification of marine oil spills and their emulsions is of great significance for emergency response to oil spill *** selection of characteristic bands with strong separability helps to realize the rapid calculation of data on aircraft or in orbit,which will improve the timeliness of oil spill emergency *** the same time,the combination of spectral and spatial features can improve the accuracy of oil spill *** ground-based experiments were designed to collect measured airborne hyperspectral data of crude oil and its emulsions,for which the multiscale superpixel level group clustering framework(MSGCF)was used to select spectral feature bands with strong *** addition,the double-branch dual-attention(DBDA)model was applied to identify crude oil and its *** with the recognition results based on original hyperspectral images,using the feature bands determined by MSGCF improved the recognition accuracy,and greatly shortened the running ***,the characteristic bands for quantifying the volume concentration of water-in-oil emulsions were determined,and a quantitative inversion model was constructed and applied to the AVIRIS image of the deepwater horizon oil spill event in *** study verified the effectiveness of feature bands in identifying oil spill pollution types and quantifying concentration,laying foundation for rapid identification and quantification of marine oil spills and their emulsions on aircraft or in orbit.

关键词： hyperspectral image spectral analysis dimensionality reduction multiscale superpixel level group clustering framework(MSGCF) double-branch dual-attention(DBDA)

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Shouhui Tongbian Capsule in treatment of constipation: Treatment and mechanism development

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Chinese Herbal Medicines 2024年第2期16卷 239-247页

作者： Liping Gong Hang Du Xin Guo Jianchao Li Xiaomin Zhu Xianhui Shen Zhiyan Huang Kaiyi Wu Guimin Zhang Rong Sun The Second Hospital of shandong University Jinan 250033China State Key Laboratory of Generic Manufacture technology of Chinese Traditional Medicine Lunan Pharmaceutical Group Co.Ltd.Linyi 276006China Tianjin University of Traditional Chinese Medicine Tianjin 301617China shandong University of Traditional Chinese Medicine Jinan 250355China Advanced Medical research institute Shandong UniversityJinan 250012China

Constipation is common in the diseases of the digestive system in *** the change in diet structure and the increase in life pressure,the prevalence rate increases year by *** traditional Chinese medicine(TCM),the location of the disease of constipation is in the large intestine,which is related to the dysfunction of lung,spleen,liver,kidney and other *** pathogenesis is conductive dysfunction of large *** on the theory,Shouhui Tongbian Capsule(SHTB)is composed of eight traditional Chinese medicines,including Polygoni multiflori Radix(Heshouwu in Chinese),Aloe(Luhui in Chinese),Cassiae Semen(Juemingzi in Chinese),Ginseng Radix et Rhizoma(Renshen in Chinese),Lycii Fructus(Gouqizi in Chinese),Asini Corii Colla(Ejiao in Chinese),Aurantii Fructus Immaturus(Zhishi in Chinese),and Atractylodis Macrocephalae Rhizoma(Baizhu in Chinese),which could help to release excessive turbid,and nourishing yin and supplementing qi in the *** study has been carried out to review the latest advances of SHTB in the treatment of *** results showed that significant effect of SHTB was found in the treatment of constipation,such as functional constipation,and constipation associated with tumor chemotherapy,colitis,type 2 diabetes and chronic cardiac ***,obvious adverse reactions were not *** could effectively treat five types of constipation,provide direction for the future exploration of SHTB in the treatment of other types of constipation。

关键词： constipation gastrointestinal hormones interstitial cells of cajal intestinal fluid secretion intestinal motility Shouhui Tongbian Capsule

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Facile synthesis of magnetic covalent organic framework nanocomposites for the enrichment and quantification of trace organophosphorus pesticides in fruit juice

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Food Science and Human Wellness 2024年

作者： Quanbin Fu Xin Sun Lu Liu Hailong Jiang Geoffrey I.N.Waterhouse Shiyun Ai Rusong Zhao School of Chemical Sciences， The University of Auckland College of Chemistry and Material Science， shandong Agricultural University Qilu University of technology (shandong Academy of Sciences)， shandong Analysis and Test Center， Key Laboratory for Applied technology of Sophisticated Analytical Instruments of shandong Province College of Food Science and Engineering， shandong Agricultural University

Organophosphorus pesticides (OPPs) in foods pose a serious threat to human health， motivating the development of novel analytical methods for their rapid detection and quantification. A magnetic covalent organic framework (M-COF) adsorbent for the magnetic solid-phase extraction (MSPE) of OPPs from foods was reported. M-COF was synthesized by the Schiff base condensation reaction of 1，3，5-tris (4-aminophenyl)benzene and 4，4-biphenyldicarboxaldehyde on the surface of amino-functionalized magnetic nanoparticles. Density–functional theory (DFT) calculations showed that adsorption of OPPs onto the surface of M-COF involved hydrophobic effects， Van der Waals interactions， π–π interactions， halogen-N bonding， and hydrogen bonding. Combined with gas chromatography–mass spectrometry (GC–MS) technology， the MSPE method features low limits of detection for OPPs (0.002–0.015 μg/L)， good reproducibility (1.45%–6.14%)， wide linear detection range (0.01–1 μg/L， R≥ 0.9935)， and satisfactory recoveries (87.3%–110.4%). The method was successfully applied for the trace analysis of OPPs in spiked fruit juices.

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Diversity and connectedness of brine shrimp viruses in global hypersaline ecosystems

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Science China(Life Sciences) 2024年第1期67卷 188-203页

作者： Xuan Dong Cixiu Li Yiting Wang Tao Hu Fan Zhang Fanzeng Meng Meirong Gao Xuekai Han Guohao Wang Jiahao Qin Hans Nauwynck Edward CHolmes Patrick Sorgeloos Liying Sui Jie Huang Weifeng Shi State Key Laboratory of Mariculture Biobreeding and Sustainable Goods Yellow Sea Fisheries Research InstituteChinese Academy of Fishery SciencesLaboratory for Marine Fisheries Science and Food Production ProcessesLaoshan LaboratoryKey Laboratory of Maricultural Organism Disease ControlMinistry of Agriculture and Rural AffairsQingdao Key Laboratory of Mariculture Epidemiology and BiosecurityQingdao 266071China shandong Provincial Hospital Affiliated to shandong First Medical University Jinan 250021China Key Laboratory of Emerging Infectious Diseases in Universities of shandong Shandong First Medical University&Shandong Academy of Medical SciencesTaian 271000China Dalian Ocean University Dalian 116023China Asian Regional Artemia Reference Center Tianjin University of Science&TechnologyTianjin 300457China Ghent University Ghent 9000Belgium Sydney institute for Infectious Diseases School of Medical SciencesThe University of SydneySydney 2006Australia Network of Aquaculture Centres in Asia-Pacific Bangkok 10900Thailand School of Public Health Shandong First Medical University&Shandong Academy of Medical SciencesJinan 250117China

Brine shrimp(Artemia)has existed on Earth for 400 million years and has major ecological importance in hypersaline *** a crucial live food in aquaculture,brine shrimp cysts have become one of the most important aquatic products traded ***,our understanding of the biodiversity,prevalence and global connectedness of viruses in brine shrimp is still very limited.A total of 143 batches of brine shrimp(belonging to seven species)cysts were collected from six continents including 21 countries and more than 100 geographic locations worldwide during 1977–*** total,55 novel RNA viruses were identified,which could be assigned to 18 different viral families and related *** viruses were dsRNA viruses,16 were+ssRNA viruses,and 28 were−ssRNA *** analyses of the RNA-directed RNA polymerase(RdRp)showed that brine shrimp viruses were often grouped with viruses isolated from other invertebrates and ***,most brine shrimp viruses were related to those from different hosts that might feed on brine shrimp or share the same ecological niche.A notable case was the novel brine shrimp noda-like virus 3,which shared 79.25%(RdRp)and 63.88%(capsid proteins)amino acid identity with covert mortality nodavirus(CMNV)that may cause losses in *** addition,both virome composition and phylogenetic analyses revealed global connectedness in certain brine shrimp viruses,particularly among Asia and Northern *** highlights the incredible species diversity of viruses in these ancient species and provides essential data for the prevalence of RNA viruses in the global aquaculture *** broadly,these findings provide novel insights into the previously unrecognized RNA virosphere in hypersaline ecosystems worldwide and demonstrate that human activity might have driven the global connectedness of brine shrimp viruses.

关键词： brine shrimp Artemia virus diversity novel virus discovery global connectedness hypersaline ecosystem

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Maize ZmSRO1e promotes mesocotyl elongation and deep sowing tolerance by inhibiting the activity of ZmbZIP61

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Journal of Integrative Plant Biology 2024年第8期66卷 1571-1586页

作者： Lumin Qin Fangfang Kong Lin Wei Minghan Cui Jianhang Li Chen Zhu Yue Liu Guangmin Xia Shuwei Liu Key Laboratory of Plant Development and Environmental Adaptation Biology Ministry of EducationSchool of Life ScienceShandong UniversityQingdao 266237China Crop research institute Anhui Academy of Agricultural SciencesHefeiAnhui Province 230031China

Deep sowing is a traditional method for drought resistance in maize production,and mesocotyl elongation is strongly associated with the ability of maize to germinate from deep ***,little is known about the functional genes and mechanisms regulating maize mesocotyl *** the present study,we identified a plant-specific SIMILAR TO RCD-ONE(SRO) protein family member,ZmSRO1e,involved in maize mesocotyl *** expression of ZmSRO1e is strongly inhibited upon transfer from dark to white *** loss-of-function zmsro1e mutant exhibited a dramatically shorter mesocotyl than the wild-type in both constant light and darkness,while overexpression of ZmSRO1e significantly promoted mesocotyl elongation,indicating that ZmSRO1e positively regulates mesocotyl *** showed that ZmSRO1e physically interacted with Zmb ZIP61,an ortholog of Arabidopsis ELONGATED HYPOCOTYL 5(HY5) and showed a function similar to that of HY5 in regulating *** found that ZmSRO1e repressed the transcriptional activity of Zmb ZIP61 toward target genes involved in the regulation of cell expansion,such as ZmEXPB4 and ZmEXPB6,by interfering with the binding of ZmbZIP61 to the promoters of target *** results provide a new understanding of the mechanism by which SRO regulates photomorphogenesis and highlight its potential application in deep sowing-resistant breeding.

关键词： deep sowing HY5 maize Mesocotyl SRO

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Responses of nitrogen cycling and related microorganisms to brackish wetlands formed by evapotranspiration

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Pedosphere 2024年第1期34卷 252-266页

作者： Jiaohui FANG Tianshu LU Jian LIU Shangbin HE Xiufeng YANG Huashan DOU Honghai ZHANG School of Life Sciences Qufu Normal UniversityQufu 273100China Environment research institute Shandong UniversityQingdao 266237China Hulunbuir Academy of Inland Lakes in Northern Cold&Arid Areas Hulunbuir 021000China

Elevated evapotranspiration due to warmer air temperature could raise salinity and nutrient levels of some inland wetlands, potentially impacting nitrogen cycling. To characterize the impact of high evapotranspiration on soil microbial nitrogen cycling in inland wetlands, we compared freshwater and brackish marsh(or non-marsh) wetlands in terms of sediment ammonia-oxidizing rate(AOR), denitrifying rate(DR), and related microbial communities in a typical inland basin, the Hulun Lake basin, in China. Results showed that marsh ecosystems(ME) exhibited 31% higher AOR and 65% higher DR than non-marsh ecosystems(NE). For NE, freshwater non-marsh wetland exhibited 12% higher AOR than brackish non-marsh wetland. This was probably due to the inhibitory effects of high NH_4~+ and salinity levels on ammonia-oxidizing archaea in brackish non-marsh wetland. Conversely, DR in brackish non-marsh wetland was 23% higher than that in freshwater non-marsh wetland, with total organic carbon(TOC) significantly influencing this difference,suggesting that the higher DR in brackish non-marsh wetland was mainly due to its higher TOC level. For ME, due to the direct and indirect interference of salinity, brackish marsh wetland displayed 26% lower AOR and 19% lower DR than freshwater marsh wetland. Besides, brackish wetlands harbored distinct ammonia-oxidizing and denitrifying microbial communities compared to freshwater wetlands. The assembly of these communities was dominated by stochastic processes, while brackish wetlands exhibited more prominent deterministic processes than freshwater wetlands. Overall, high evapotranspiration altered activities and community characteristics of ammonia oxidizers and denitrifiers in inland brackish wetlands by enhancing salinity and nutrient levels,while emergent plants occurring in ME could mitigate the adverse effects of salt stress of inland brackish wetlands on nitrogen cycling.

关键词： ammonia-oxidizing archaea ammonia-oxidizing bacteria aquatic plants denitrifying bacteria nitrogen transformation inland wetlands

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Integration of advanced biotechnology for green carbon

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Green Carbon 2024年第2期2卷 164-175页

作者： Miao Wang Yixiang Wang Jingyuan Liu Hua Yu Peng Liu Yujing Yang Dan Sun Heng Kang Yanting Wang Jingfeng Tang Chunxiang Fu Liangcai Peng Key Laboratory of Fermentation Engineering(Ministry of Education) National"111"Center for Cellular Regulation&Molecular PharmaceuticsCooperative Innovation Center of Industrial Fermentation(Ministry of Education&Hubei Province)Hubei Key Laboratory of Industrial MicrobiologyBiomass&Bioenergy Research CenterHubei University of TechnologyWuhan 430068China College of Plant Science&technology Huazhong Agricultural UniversityWuhan 430070China shandong Provincial Key Laboratory of Energy Genetics CAS Key Laboratory of BiofuelsQingdao Institute of Bioenergy&Bioprocess TechnologyChinese Academy of SciencesQingdao 266101China shandong Energy institute Qingdao 266101China

Carbon neutralization has been introduced as a long-term policy to control global warming and climate *** plant photosynthesis produces the most abundant lignocellulosic biomass on Earth,its conversion to biofuels and bioproducts is considered a promising solution for reducing the net carbon ***,natural lignocellulose recalcitrance crucially results in a costly biomass process along with secondary waste *** updating recent advances in plant biotechnology,biomass engineering,and carbon nanotechnology,this study proposes a novel strategy that integrates the genetic engineering of bioenergy crops with green-like biomass processing for cost-effective biofuel conversion and high-value *** selecting key genes and appropriate genetic manipulation approaches for precise lignocellulose modification,this study highlights the desirable genetic site mutants and transgenic lines that are raised in amorphous regions and inner broken chains account for high-density/length-reduced cellulose nanofiber assembly in *** the amorphous regions and inner-broken chains of lignocellulose substrates are defined as the initial breakpoints for enhancing biochemical,chemical,and thermochemical conversions,desirable cellulose nanofibers can be employed to achieve nearcomplete biomass enzymatic saccharification for maximizing biofuels or high-quality biomaterials,even under cost-effective and green-like biomass processes in *** study emphasizes the optimal thermal conversion for generating high-performance nanocarbons by combining appropriate nanomaterials generated from diverse lignocellulose ***,this study provides a perspective on the potential of green carbon productivity as a part of the fourth industrial revolution.

关键词： Lignocellulose Biofuels Nanomaterials Nanocarbon Genetic engineering

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IL-13/IL-13RA2 signaling promotes colorectal cancer stem cell tumorigenesis by inducing ubiquitinated degradation of p53

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Genes & Diseases 2024年第1期11卷 495-508页

作者： Baoyu He Jing Liang Qianqian Qin Yuqin Zhang Shuo Shi Jinghe Cao Zhixin Zhang Qingli Bie Rou Zhao Li Wei Baogui Zhang Bin Zhang Department of Laboratory Medicine Affiliated Hospital of Jining Medical UniversityJining Medical UniversityJiningShandong 272000China Postdoctoral Mobile Station of shandong University of Traditional Chinese Medicine JinanShandong 250355China Department of Reproductive Medicine Affiliated Hospital of Jining Medical UniversityJining Medical UniversityJiningShandong 272000China Department of Gastrointestinal Surgery Affiliated Hospital of Jining Medical UniversityJining Medical UniversityJiningShandong 272000China institute of Forensic Medicine and Laboratory Medicine Jining Medical UniversityJiningShandong 272067China

Cancer stem cells(CSCs)are considered tumor-initiating cells and the main drivers of disease *** these rare cancer cells,however,remains challenging with respect to therapeutic ***,we report the up-regulation of IL-13RA2 expression in colorectal cancer(CRC)tissues and spheroid *** expression of IL-13RA2 was positively correlated with canonical stemness markers in *** further demonstrated that the level of IL-13 was up-regulated in the serum of CRC ***,recombinant IL-13(rIL13)stimulation promoted the sphere formation,proliferation,and migration of CRC cells in vitro and enhanced tumorigenesis in *** phenotype could be reversed by knocking down ***,IL-13 activated autophagy by inducing LC3I/LC3II transformation in CRC-CSCs,which was crucial for the biological functions of *** further demonstrated that IL-13RA2 acted as a modular link of the E3 ligase UBE3C and the substrate p53 protein,enhancing the interaction of UBE3C and p53,thereby inducing the K48-linked ubiquitination of *** conclusion,the IL-13/IL-13RA2 signaling cascade promotes CRC-CSC self-renewal and tumorigenesis by inducing p53 ubiquitination,adding an important layer to the connection between IL-13 and p53,which can be translated into novel targeted therapies.

关键词： Autophagy Colorectal cancer stem cells IL-13/IL-13RA2 signaling p53

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Study on frictional behavior of SiC_(f)/SiC composite clad tube clamping condition under nuclear irradiation

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Friction 2024年第5期12卷 919-938页

作者： Chenglong XIAO Liangliang SHEN Tianqi ZHU Jianbo TANG Ximing XIE Xinyu FAN Jian XU Zhiying REN School of Mechanical Engineering Zhejiang University of TechnologyHangzhou310023China Engineering Laboratory of Advanced Energy Materials Ningbo Institute of Material Technology and EngineeringChinese Academy of SciencesNingbo315201China State Key Laboratory of Fine Chemicals Liaoning High-Performance Polymer Engineering Research CenterSchool of Chemical EngineeringDalian University of TechnologyDalian116024China School of Mechanical Engineering and Automation Fuzhou UniversityFuzhou350116China School of Computer Science and technology Shandong UniversityQingdao266237China Aviation Industry Corporation of China Ltd.Beijing100028China

Silicon carbide fiber reinforced silicon carbide matrix(SiC_(f)/SiC)composite is the key cladding material of nuclear fuel,which determines the safety and reliability of nuclear fuel storage and *** replacement of its storage and transportation scenario needs to be completed by the manipulator,but the application of SiC_(f)/SiC wear,fracture,and nuclear leakage in the snatching process of brittle-flexible-rigid contact in the irradiation environment has been seriously restricted due to unclear understanding of the damage ***,the effects of irradiation dose and clamping load on the friction characteristics of the contact interface between SiC_(f)/SiC clad tube are studied in this paper,and the effects of irradiation parameters and clamping force on the static friction coefficient of the contact interface between the clad tube and flexible nitrile are *** on the Greenwood-Williamson tribological model,a numerical model of the shape and structure of the contact micro-convex at the micro-scale of the clamping interface is constructed by introducing the multi-surface integral,and finally verified by *** research results show that there is a unique“Irradiation suppression zone”under the clamping condition of SiC_(f)/SiC cladding tube under the nuclear irradiation environment,and the growth of static friction coefficient slows down until stagnates after irradiation reaches a certain extent(600 kGy),and there will be a decline when the irradiation dose continues to increase,among which the clamping force of 15.2 N within the irradiation interval of 1,000 kGy can meet the safety of nuclear environment *** results of this paper can provide an important theoretical basis and application guidance for the safe operation of SiC_(f)/SiC cladding tubes in the storage and transportation clamping process.

关键词： SiC_(f)/SiC Clad tube nuclear irradiation conditions Greenwood-Williamson tribological model multi-surface integral

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