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Indigenous Microbial Community Structure in Rhizosphere of Chinese Kale as Afected by Plant Growth-Promoting Rhizobacteria Inoculation

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Pedosphere 2013年第5期23卷 577-592页

作者： P.PIROMYOU R.NOISANGIAM H.UCHIYAMA P.TITTABUTR N.BOONKERD N.TEAUMROONG school of biotechnology Institute of Agricultural TechnologySuranaree University of Technology school of Life and Environmental Sciences Institute of Applied BiochemistryUniversity of Tsukuba

Plant growth-promoting rhizobacteria （PGPR） have been widely recognized as an important agent, especially as a biofertilizer, in agricultural systems. The objectives of this study were to select effective PGPR for Chinese kale （Brassica oleracea var. alboglabra） cultivation and to investigate the effect of their inoculation on indigenous microbial community structure. The Bacillus sp. SUT1 and Pseudomonas sp. SUT19 were selected for determining the efficiency in promoting Chinese kale growth in both pot and field experiments. In the field experiment, PGPR amended with compost gave the highest yields among all treatments. The Chinese kale growth promotion may be directly affected by PGPR inoculation. The changes of microbial community structure in the rhizosphere of Chinese kale following PGPR inoculation were examined by denaturing gradient gel electrophoresis （DGGE） and principal coordinate analysis. The DGGE fingerprints of 16S rDNA amplified from total community DNA in the rhizosphere confirmed that our isolates were established in the rhizosphere throughout this study. The microbial community structures were slightly different among all the treatments, and the major changes depended on stages of plant growth. DNA sequencing of excised DGGE bands showed that the dominant species in microbial community structure in the rhizosphere were not mainly interfered by PGPR, but strongly influenced by plant development. The microbial diversity as revealed by diversity indices was not different between the PGPR-inoculated and uninoculated treatments. In addition, the rhizosphere soil had more influence on eubacterial diversity, whereas it did not affect archaebacterial and fungal diversities.

关键词： Brassica oleracea var. alboglabra inoculum structure of microbial population

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Development and Identification of Novel Rice Blast Resistant Sources and Their Characterization Using Molecular Markers

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Rice science 2015年第6期22卷 300-308页

作者： S.J.S.RAMA DEVI Kuldeep SINGH B.UMAKANTH B.VISHALAKSHI P.RENUKA K.VIJAY SUDHAKAR M.S.PRASAD B.C.VIRAKTAMATH V.RAVINDRA BABU M.S.MADHAV biotechnology Crop ImprovementIndian Institute of Rice ResearchIndian Council of Agriculture Research school of agricultural biotechnology Punjab Agricultural University Plant Pathology Indian Institute of Rice ResearchIndian Council of Agriculture Research

To develop and characterize introgression lines for leaf and neck blast resistance, 326 introgression lines were developed using various accessions of six different AA genome wild species in the genetic background of elite Indian varieties like PRl14 and Pusa 44 and were screened for blast resistance. Stringent phenotyping coupled with genotyping using gene based markers led to the identification of four resistant introgression lines, which showed promising resistance and do not possess any of the tested genes. Furthermore, multi-location screening confirmed the field resistance of the four introgression lines to both leaf and neck blast. Molecular characterization of these introgression lines using genome-wide simple sequence repeat markers revealed the presence of small percentage of wild Oryza genome introgrssion. So these lines can be used for mapping and identification of novel leaf and neck blast resistance genes. Thus, these four introgression lines can be considered as new genetic resources for blast resistance.

关键词： rice blast resistance introgression line gene profiling wild species

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Tailor-made high elasticity and low-hysteresis hydrogels based on asymmetric H-bonding crosslinking for wearable applications

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Science China Chemistry 2025年

作者： Xiaofang Shi Nan Shi Miaomiao Dang Chengyu Ji Yingjie Li Peiyi Wu Zhiguo Hu Collaborative Innovation Centre of Henan Province for Green Manufacturing of Fine Chemicals Henan Engineering Laboratory of Chemical Pharmaceutical and Biomedical Materials School of Chemistry and Chemical Engineering Henan Normal University State Key Laboratory for Modification of Chemical Fibers and Polymer Materials College of Chemistry Chemical Engineering and Biotechnology & Center for Advanced Low-dimension Materials Donghua University

The conventional method of fabricating hydrogels constantly confronts the conflict between elasticity and toughness, limiting their repetitive application. Achieving the desired elasticity through a simple and low-cost approach is a significant challenge for hydrogels, particularly through rational molecular design. Here, low-hysteresis and high-toughness hydrogels are developed from the design of a new feature monomer, N-acryloylethylsemicarbazide (NACE). Based on a concept of “asymmetric Hbonding design”, the unique double and triple H-bonding of NACE can result in a novel asymmetric crosslinking polymer with alternating strong and weak H-bonding regions. The NACE is copolymerized with acrylamide (AM) to regulate the mechanical properties of hydrogel via H-bonding density. The P(NACE-AM) ionic hydrogels are obtained simply and rapidly via one-step photopolymerization without a chemical cross-linking agent. The P(NACE-AM) hydrogels combine superb mechanical elasticity and toughness, and excellent ionic conductivity, showing great potential as durable ionic conductive devices for wearable utilization.

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Involvement of phosphatidate phosphatase in the biosynthesis of triacylglycerols in Chlamydomonas reinhardtii

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Journal of Zhejiang University-Science B(Biomedicine & biotechnology) 2013年第12期14卷 1121-1131页

作者： Xiao-dong DENG Jia-jia CAI Xiao-wen FEI Key Laboratory of Tropical Crop biotechnology Ministry of Agriculture Institute of Tropical Bioscience and Biotechnology Chinese Academy of Tropical Agricultural Sciences school of Science Hainan Medical College

Lipid biosynthesis is essential for eukaryotic cells, but the mechanisms of the process in microalgae remain poorly understood. Phosphatidic acid phosphohydrolase or 3-sn-phosphatidate phosphohydrolase(PAP) catalyzes the dephosphorylation of phosphatidic acid to form diacylglycerols and inorganic orthophosphates. This reaction is integral in the synthesis of triacylglycerols. In this study, the mRNA level of the PAP isoform CrPAP2 in a species of Chlamydomonas was found to increase in nitrogen-free conditions. Silencing of the CrPAP2 gene using RNA interference resulted in the decline of lipid content by 2.4%–17.4%. By contrast, over-expression of the CrPAP2 gene resulted in an increase in lipid content by 7.5%–21.8%. These observations indicate that regulation of the CrPAP2 gene can control the lipid content of the algal cells. In vitro CrPAP2 enzyme activity assay indicated that the cloned CrPAP2 gene exhibited biological activities.

关键词： Phosphatidate phosphohydrolase 2 Triacylglycerol biosynthesis RNAi Chlamydomonas reinhardtii Nitrogen deprivation Over-expression

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Genetic Variation for Anaerobic Germination and Emergence from Deeper Soil Depth in Oryza nivara Accessions

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Rice science 2022年第4期29卷 304-308页

作者： Revanayya MGOTHE Dharminder BHATIA Akashdeep KAMBOJ Nitika SANDHU Buta Singh DHILLON Department of Plant Breeding and Genetics Punjab Agricultural UniversityLudhiana 141004India school of agricultural biotechnology Punjab Agricultural UniversityLudhiana 141004India

Anaerobic germination and emergence from deeper soil depth are two important traits for breeding rice suitable for direct seeded *** order to evaluate genetic variation for these traits,a total of 300 Oryza nivara accessions were evaluated along with checks,of which,159 accessions germinated under anaerobic conditions indicating presence of immense variability in *** 159 accessions,69 germinated in submerged conditions and 90 germinated after removing water with availability of aerobic conditions,indicating two different mechanisms operating in ***,out of 300 *** accessions,218 germinated from 6 cm and 95 germinated from 8 cm soil *** accessions that germinated from deeper soil depth had longer mesocotyl and coleoptile lengths.

关键词： soil breeding removing

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Deciphering fungal metabolon coupling tandem inverse-electrondemand Diels-Alder reaction and semipinacol rearrangement for the biosynthesis of spiro polycyclic alkaloids

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Science China Chemistry 2025年第1期68卷 288-296页

作者： Shuai Liu Wen-Qiang Xu Ying-Tong Di Man-Cheng Tang Ding-Kang Chen Ming-Ming Cao Yao-Wen Chang Hong-Yu Tang Chun-Mao Yuan Jun-Bo Yang Zhi-Li Zuo Han Guo Zi-Fei Xu Ying Zeng Yun-Dong Wu Xiao-Jiang Hao Key Laboratory of Phytochemistry and Natural Medicines (Chinese Academy of Sciences) Kunming Institute of Botany Chinese Academy of Sciences University of Chinese Academy of Sciences Lab of Computational Chemistry and Drug Design State Key Laboratory of Chemical Oncogenomics Peking University Shenzhen Graduate School Shenzhen Bay Laboratory State Key Laboratory of Microbial Metabolism School of Life Sciences & Biotechnology Shanghai Jiao Tong University State Key Laboratory of Functions and Applications of Medicinal Plants Guizhou Medical University Molecular Biology Experimental Center Germplasm Bank of Wild Species in Southwest China Kunming Institute of Botany Chinese Academy of Sciences Yunnan Key Laboratory for Wild Plant Resources Kunming Institute of Botany Chinese Academy of Sciences Research Unit of Chemical Biology of Natural Anti-Virus Products Chinese Academy of Medical Sciences

In the intricate process of natural product biosynthesis, a metabolon can enhance metabolic flux by associating sequential enzymes. A fungal metabolon, comprising of flavin-dependent monooxygenase Spe F and P450 monooxygenase Spe G, is identified in the biosynthesis of spiro polycyclic alkaloids(+)-notoamide B and its diastereomer(+)-versicolamide B. Using notoamide E as a substance, Spe F/Spe G metabolon can control the stereoselectivity of its 2,3-epoxidation, followed by hydrogen atom ion at C-17 to generate reactive epoxide tau-m A with dienyl iminium unit. Subsequently,(+)-notoamide B and(+)-versicolamide B are produced via tandem nonenzymatic inverse-electron-demand Diels-Alder reaction and semipinacol rearrangement. This provides the first example of metabolon in the biosynthesis of spiro-prenylated indole alkaloids.

关键词： metabolon Diels-Alder reaction semipinacol rearrangement biosynthesis notoamides spiro polycyclic alkaloids

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Cloning and functional analysis of a novel ascorbate peroxidase(APX) gene from Anthurium andraeanum

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Journal of Zhejiang University-Science B(Biomedicine & biotechnology) 2013年第12期14卷 1110-1120页

作者： Hui-chun LIU Dan-qing TIAN Jian-xin LIU Guang-ying MA Qing-cheng ZOU Zhu-jun ZHU College of Agriculture & biotechnology Zhejiang University Research & Development Center of Flower Zhejiang Academy of Agricultural Sciences school of agricultural and Food Science Zhejiang A&F University

An 888-bp ful-length ascorbate peroxidase （APX） complementary DNA （cDNA） gene was cloned from Anthurium andraeanum, and designated as AnAPX. It contains a 110-bp 5′-noncoding region, a 28-bp 3′-noncoding region, and a 750-bp open reading frame （ORF）. This protein is hydrophilic with an aliphatic index of 81.64 and its structure consisting ofα-helixes,β-turns, and random coils. The AnAPX protein showed 93%, 87%, 87%, 87%, and 86% similarities to the APX homologs from Zantedeschia aethiopica, Vitis pseudoreticulata, Gossypium hirsutum, Elaeis guineensis, and Zea mays, respectively. AnAPX gene transcript was measured non-significantly in roots, stems, leaves, spathes, and spadices by real-time polymerase chain reaction （RT-PCR） analysis. Interestingly, this gene expression was remarkably up-regulated in response to a cold stress under 6 °C, implying that AnAPX might play an important role in A. andraeanum tolerance to cold stress. To confirm this function we overexpressed AnAPX in tobacco plants by transformation with an AnAPX expression construct driven by CaMV 35S promoter. The transformed tobacco seedlings under 4 °C showed less electrolyte leakage （EL） and malondialdehyde （MDA） content than the control. The content of MDA was correlated with chilling tolerance in these transgenic plants. These results show that AnAPX can prevent the chilling challenged plant from cellmembrane damage and ultimately enhance the plant cold tolerance.

关键词： AnAPX Gene expression Cold stress Anthurium andraeanum

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Three-dimensional cell culture systems as an in vitro platform for cancer and stem cell modeling

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World Journal of Stem Cells 2019年第12期11卷 1065-1083页

作者： Nipha Chaicharoenaudomrung Phongsakorn Kunhorm Parinya Noisa Laboratory of Cell-Based Assays and Innovations School of Biotechnology Institute of Agricultural TechnologySuranaree University of Technology

Three-dimensional(3D)culture systems are becoming increasingly popular due to their ability to mimic tissue-like structures more effectively than the monolayer *** cancer and stem cell research,the natural cell characteristics and architectures are closely mimicked by the 3D cell ***,the 3D cell cultures are promising and suitable systems for various proposes,ranging from disease modeling to drug target identification as well as potential therapeutic substances that may transform our *** review provides a comprehensive compendium of recent advancements in culturing cells,in particular cancer and stem cells,using 3D culture *** major approaches highlighted here include cell spheroids,hydrogel embedding,bioreactors,scaffolds,and *** addition,the progress of employing 3D cell culture systems as a platform for cancer and stem cell research was addressed,and the prominent studies of 3D cell culture systems were discussed.

关键词： Three-dimensional cultures Cancer Stem cells Disease modeling In vitro screening platform

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Root Endophyte Shift and Key Genera Discovery in Rice under Barnyardgrass Stress

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Rice science 2023年第2期30卷 160-170,I0040-I0048页

作者： LI Shuyan YAN Qiling WANG Jieyu JIANG Huidan LI Zuren PENG Qiong Long Ping Branch Graduate School of Hunan UniversityChangsha 410125China Hunan agricultural biotechnology Research Institute Hunan Academy of Agricultural SciencesChangsha 410125China

Despite increasing knowledge of barnyardgrass(Echinochloa crus-galli) interference with rice, relatively little is known how endophytes improve the ability of rice against barnyardgrass stress. Here, we provided a detailed temporal characterization of rice root-associated microbiomes during co-cultivation with barnyardgrass and a comparison with the microbiomes of weed-free rice plants. Alpha diversity analysis indicated that barnyardgrass had the opposite effects on endophytic bacteria and fungi in rice roots, in terms of the community diversity, richness and coverage at the rice seedling stage. Principal coordinate analysis showed that barnyardgrass had only a minor effect on the community composition of endophytes in rice roots at the rice seedling stage, but showed a significant and maximum interference at the heading stage. Rice recruited many endophytes to resist biotic stress from barnyardgrass, especially for fungi. PICRUSt(phylogenetic investigation of communities by reconstruction of unobserved states) predictive analysis indicated that 23 metabolic pathways of bacteria were overrepresented in rice. In addition, the main trophic mode of fungi was pathotroph according to FUNGuild analysis. A positive correlation between bacteria and fungi in rice roots was found via network analysis. Anaeromyxobacter, Azospira and Pseudolabrys were the vital bacteria, Phaeosphaeria and Funneliformis were the dominant fungi in maintaining the stability of the ecological network. These results provided data and a theoretical basis for the in-depth understanding of what role endophytes play in rice resistance to barnyardgrass stress and will have implications on improving the resistance of rice against biotic stress using root microbiota.

关键词： rice Echinochloa crus-galli biotic stress endophytic bacterium endophytic fungus phylogenetic investigation of communities by reconstruction of unobserved states FUNGuild test

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Mitophagy in acute central nervous system injuries:regulatory mechanisms and therapeutic potentials

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Neural Regeneration Research 2025年第9期20卷 2437-2453页

作者： Siyi Xu Junqiu Jia Rui Mao Xiang Cao Yun Xu Department of Neurology Nanjing Drum Tower HospitalClinical College of Jiangsu UniversityNanjingJiangsu ProvinceChina Department of Neurology Nanjing Drum Tower HospitalChinese Academy of Medical Science&Peking Union Medical CollegeNanjingJiangsu ProvinceChina Department of Neurology Nanjing Drum Tower HospitalAffiliated Hospital of Medical SchoolNanjing UniversityNanjingJiangsu ProvinceChina State Key Laboratory of Pharmaceutical biotechnology and Institute of Translational Medicine for Brain Critical Diseases Nanjing UniversityNanjingJiangsu ProvinceChina Jiangsu Key Laboratory for Molecular Medicine Medical School of Nanjing UniversityNanjingJiangsu ProvinceChina Nanjing Neurology Medical Center NanjingJiangsu ProvinceChina

Acute central nervous system injuries,including ischemic stro ke,intracerebral hemorrhage,subarachnoid hemorrhage,traumatic brain injury,and spinal co rd injury,are a major global health *** optimal therapies and improving the long-term neurological functions of patients with acute central nervous system injuries are urgent *** are susceptible to damage after acute central nervous system injury,and this leads to the release of toxic levels of reactive oxygen species,which induce cell ***,a selective form of autophagy,is crucial in eliminating redundant or damaged mitochondria during these *** evidence has highlighted the significant role of mitophagy in acute central nervous system *** this review,we provide a comprehensive overview of the process,classification,and related mechanisms of *** also highlight the recent developments in research into the role of mitophagy in various acute central nervous system injuries and drug therapies that regulate *** the final section of this review,we emphasize the potential for treating these disorders by focusing on mitophagy and suggest future research paths in this area.

关键词： autophagy intracerebral hemorrhage ischemic stroke mitochondria mitochondrial biogenesis mitochondrial quality control mitophagy spinal cord injury subarachnoid hemorrhage traumatic brain injury

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