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Single-cell RNA sequencing facilitates the elucidation of the complete biosynthesis of the antidepressant hyperforin in St. John's wort

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Molecular plant 2024年第9期17卷 1439-1457页

作者： Song Wu Ana Luisa Malaco Morotti Jun Yang Ertao Wang Evangelos C.Tatsis National Key laboratory of plant Molecular Genetics CASs Center for Excellence in Molecular Plant SciencesShanghai lnstitute of Plant Physiology and EcologyChineseAcademy of SciencesShanghai 200032China University of Chinese Academy of Sciences Shanghai 200032China UEPAMS-CAS-JICs Centre of Excellencefor plant anamlcroblalSclence Snangnal 200032Cnina

Hyperforin is the compound responsible for the effectiveness of ***'s wort(Hypericum perforatum)as an antidepressant,but its complete biosynthetic pathway remains *** discovery based on co-expression analysis of bulk RNA-sequencing data or genome mining failed to discover the missing steps in hyperforin *** this study,we sequenced the 1.54-Gb tetraploid *** genome assem-bled into 32 chromosomes with the scaffold N50 value of 42.44 *** single-cell RNA sequencing,we iden-tified a type of cell,“Hyper cells”,wherein hyperforin biosynthesis de novo takes place in both the leaves and *** pathway reconstitution in yeast and tobacco,we identified and characterized four transmembrane prenyltransferases(HpPT1-4)that are localized at the plastid envelope and complete the hyperforin biosynthetic *** hyperforin polycyclic scaffold is created by a reaction cascade involving an irregular isoprenoid coupling and a tandem *** findings reveal how and where hy-perforin is biosynthesized,enabling synthetic-biology reconstitution of the complete ***,this study not only deepens our comprehension of specialized metabolism at the cellularlevel but also provides strategic guidance for elucidation of the biosynthetic pathways of other specializied metabolites in plants.

关键词： hyperforin Hypericum perforatum de novo genome sequencing single-cell RNA sequencing biosyn-thetic pathway meroterpenoids

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Genome wide investigation of Hsf gene family in Phoebe bournei:identification,evolution,and expression after abiotic stresses

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Journal of Forestry Research 2024年第5期35卷 201-215页

作者： Wenhai Liao Xinghao Tang Jingshu Li Qiumian Zheng Ting Wang Shengze Cheng Shiping Chen Shijiang Cao Guangqiu Cao College of Forestry Fujian Agriculture and Forestry UniversityFuzhou 350002People’s Republic of China University Key laboratory of Forest stress Physiology Ecology and Molecular Biology of Fujian ProvinceFuzhou 350002People’s Republic of China Fujian Academy of Forestry Sciences Fuzhou 350002People’s Republic of China College of plant Protection Fujian Agriculture and Forestry UniversityFuzhou 350002People’s Republic of China

Heat shock transcription factors(Hsfs)have important roles during plant growth and development and responses to abiotic *** identification and func-tion of Hsf genes have been thoroughly studied in various herbaceous plant species,but not woody species,especially Phoebe bournei,an endangered,unique species in *** this study,17 members of the Hsf gene family were identi-fied from *** using bioinformatic ***-netic analysis indicated that PbHsf genes were grouped into three subfamilies:A,B,and *** motifs,three-dimensional structure,and physicochemical properties of the PbHsf proteins were also *** structure of the PbHsf genes varied in the number of exons and ***-diction of cis-acting elements in the promoter region indi-cated that PbHsf genes are likely involved in responses to plant hormones and stresses.A collinearity analysis dem-onstrated that expansions of the PbHsf gene family mainly take place via segmental *** expression levels of PbHsf genes varied across different plant *** the basis of the expression profiles of five representative PbHsf genes during heat,cold,salt,and drought stress,PbHsf pro-teins seem to have multiple functions depending on the type of abiotic *** systematic,genome-wide investigation of PbHsf genes in *** and their expression patterns provides valuable insights and information for further func-tional dissection of Hsf proteins in this endangered,unique species.

关键词： Phoebe bournei Hsf gene family Evolutionary analysis Expression mechanism Abiotic stresses

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Cytospora pyri promotes Erwinia amylovora virulence by providing metabolites and hyphae

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Journal of Integrative Agriculture 2024年第9期23卷 3045-3054页

作者： Tong Shen Mengdi Ye Yeping Xu Bohan Ding Hongtao Li Li Zhang Jun Wang Yanli Tian Baishi Hu Youfu Zhao College of plant Protection/Key laboratory of Integrated Management of Crop Diseases and Pests Nanjing Agricultural UniversityNanjing 210095China Key laboratory of plant Quarantine Pests Monitoring and Control Ministry of Agriculture and Rural AffairsNanjing 210095China plant Protection and Quarantine Station of Xinjiang Uygur Autonomous Region Urumqi 830001China Xinjiang Key laboratory of Agricultural Biosafety Institute of Plant ProtectionXinjiang Academy of Agricultural SciencesUrumqi 830013China College of Agriculture Xinjiang Agricultural UniversityUrumqi 830052China plant Pathology Department Washington State UniversityProsserWA 24106USA

Bacterial-fungal interactions are widespread in *** observed that pear orchards affected by Cytospora pyri(formerly Valsa pyri)were often accompanied with Erwinia ***,the relationship of the two pathogens was *** objective of this study was to determine whether the synergistic effect exists between *** and *** first analyzed the coexistence frequencies of *** and *** in pear *** of the two pathogens,growth,physical interactions,amylovoran production,and expression of genes for amylovoran biosynthesis were *** results showed that *** and *** could coexist on the same lesion and caused much more severe *** also found that *** could physically attach to *** and the expression of amylovoran biosynthesis genes were up-regulated with fungal metabolite *** results indicate that *** and *** can cooperatively interact,which provides *** with an opportunity to promote bacterial dispersal and production of virulence factor in ***.

关键词： pear fire blight Erwinia amylovora Valsa canker amylovoran synergy

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HPLC Fingerprint Combined with Chemometrics and Network Pharmacology for Q-Markers Prediction Analysis of Saposhnikovia divaricata

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Journal of Analysis and Testing 2024年第1期8卷 83-94页

作者： Renguo Zhang Xinjian Liu Tong Wang Jie Yu Mengyuan Wang Jianmin Sun Xueling Yu Na Niu Ligang Chen College of Chemistry Chemical Engineering and Resource UtilizationKey Laboratory of Forest Plant EcologyNortheast Forestry UniversityHarbin 150040China

Saposhnikovia divaricata(SD)has high medicinal and edible value,but relatively little research has been done on its qual-ity markers(Q-markers).To further clarify the Q-markers of SD with their corresponding pharmacodynamic *** this experiment,14 batches of SD were identified and screened for Q-marker candidate components using a combination of HPLC fingerprint with similarity analysis,principal component analysis,hierarchical cluster analysis,and partial least squares discriminant ***,network pharmacology was used to predict Q-markers and core *** results showed that 5-O-methylvisammioside,cimifugin,and prim-O-glucosylcimifugin could be used as Q-markers of SD;while,MAPK1,MAPK3,PIK3CA,JUN,and MAPK8 were the core targets of SD for drug *** further evaluate the bind-ing efficiency of Q-markers,molecular docking of the main active ingredients of SD to the core targets was *** results showed that the compounds bind well to their targets,and binding energies were all less than-5 kcal/*** Q-markers obtained from the screening were closely related to the core target genes,which could achieve therapeutic effects by modulating the relevant signaling *** study offers a reference for the establishment of a set of quality control evaluation system for SD potential Q-markers prediction analysis,and lays the foundation for elucidating the mechanism of actionunderlying itspharmacodynamic substance.

关键词： Saposhnikovia divaricata Q-markers Fingerprint Chemometrics Network pharmacology Molecular docking

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TaSRO1 interacts with TaVP1 to modulate seed dormancy and pre-harvest sprouting resistance in wheat

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Journal of Integrative plant Biology 2024年第1期66卷 36-53页

作者： Shupeng Liu Li Li Wenlong Wang Guangmin Xia Shuwei Liu Key laboratory of plant Development and Environmental Adaptation Biology Ministry of EducationSchool of Life ScienceShandong UniversityQingdao 266237China

Dormancy is an adaptive trait which prevents seeds from germinating under unfavorable environmental *** with weak dormancy undergo pre-harvest sprouting(PHS)which decreases grain yield and *** the genetic mechanisms that regulate seed dormancy and resistance to PHS is crucial for ensuring global food *** this study,we illustrated the function and molecular mechanism of TaSRO1 in the regulation of seed dormancy and PHS resistance by suppressing *** tasro1 mutants exhibited strong seed dormancy and enhanced resistance to PHS,whereas the mutants of tavp1 displayed weak *** evidence has shown that TaVP1 is epistatic to *** evidence has shown that TaSRO1 interacts with TaVP1 and represses the transcriptional activation of the PHS resistance genes TaPHS1 and ***,TaSRO1 undermines the synergistic activation of TaVP1 and TaABI5 in PHS resistance ***,we highlight the great potential of tasro1 alleles for breeding elite wheat cultivars that are resistant to PHS.

关键词： wheat seed dormancy pre-harvest sprouting(PHS) ABA signaling vivipary

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Identification of an odorant receptor responding to sex pheromones in Spodoptera frugiperda extends the novel type-I PR lineage in moths

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Insect Science 2024年第2期31卷 489-502页

作者： Sai Zhang Emmanuelle Jacquin-Joly Nicolas Montagne Fang Liu Yang Liu Guirong Wang College of Horticulture and plant Protection Yangzhou UniversityYangzhouChina State Key laboratory for Biology of plant Diseases and Insect Pests Institute of Plant ProtectionChinese Academy of Agricultural SciencesBejingChina Institute of Ecology and En vironmental Sciences of Paris INRAESorbonne UniversityCNRSIRDUPECUniversity of ParisVersaillesFrance Shenzhen Branch Guangdong Laboratory for Lingnan Modern AgricultureGenome Analysis Laboratory of the Ministry of AgricultureAgricultural Genomics Institute at ShenzhenChinese Academy of Agricultural SciencesShenzhenChina

moths,pheromone receptors(PRs)are crucial for intraspecific sexual communication between males and *** PRs are considered as an ideal model for studying the evolution of insect PRs,and a large number of PRs have been identified and functionally characterized in different moth *** PRs were initially thought to fall into a single monophyletic clade in the odorant receptor(OR)family,but recent studies have shown that ORs in another lineage also bind type-I sex pheromones,which indicates that type-I PRs have multiple independent origins in the *** this study,we investigated whether ORs of the pest moth Spodoptera frugiperda belonging to clades closely related to this novel PR lineage may also have the capacity to bind type-I pheromones and serve as male *** the 7 ORs tested,only 1(SfruOR23)exhibited a male-biased expression ***,in vitro functional characterization showed that SfruOR23 could bind several type-I sex pheromone compounds with Z-9-tetradecenal(Z9-14:Ald),a minor component found in female sex pheromone glands,as the optimal *** addition,SfruOR23 also showed weak responses to plant volatile organic ***,we characterized an *** PR positioned in a lineage closely related to the novel PR clade,indicating that the type-I PR lineage can be extended in moths.

关键词： odorant receptor pheromone receptor lineage sex pheromone Spodoptera frugiperda

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Botrytis cinerea-induced F-box protein 1 enhances disease resistance by inhibiting JAO/JOX-mediated jasmonic acid catabolism in Arabidopsis

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Molecular plant 2024年第2期17卷 297-311页

作者： Min Zhang Weiwei Li Tingyu Zhang Yueyan Liu Lijing Liu The Key laboratory of plant Development and Environmental Adaptation Biology Ministry of EducationSchool of Life SciencesShandong UniversityQingdao 266237China

Jasmonic acid(JA)is a crucial phytohormone that regulates plant *** endogenous JA level is determined by the rates of its biosynthesis and catabolism in *** activation of JA biosynthesis has been well documented;however,how plants repress JA catabolism upon pathogen infection remains *** this study,we identified and characterized Botrytis cinerea-induced F-box protein 1(BFP1)in *** expression of BFP1 was induced by *** in a JA signaling-dependent manner,and BFP1 protein was critical for plant defense against *** and plant response to *** addition,BFP1 overexpression increased plant defenses against broad-spectrum pathogens without fitness *** experiments demonstrated that BFP1 interacts with and mediates the ubiquitination and degrada-tion of jasmonic acid oxidases(JAOs,also known as jasmonate-induced oxygenases,JoXs),the enzymes that hydroxylate JA to *** with this,BFP1 affects the accumulation of JA and 12OH-JA during *** ***,mutation of JAo2 complemented the phenotypes of the bfp1 ***,our results unveil a new mechanism used by plants to activate immune responses upon path-ogeninfection:suppressing JA catabolism.

关键词： plant immunity BFP1 JAO/JOXs JA catabolism ubiquitination-mediated degradation

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Multivariate chemical analysis:From sensors to sensor arrays

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Chinese Chemical Letters 2024年第7期35卷 14-24页

作者： Xueling Yu Lixing Fu Tong Wang Zhixin Liu Na Niu Ligang Chen College of Chemistry Chemical Engineering and Resource UtilizationKey Laboratory of Forest Plant EcologyNortheast Forestry UniversityHarbin 150040China

Chemical sensor arrays can obtain more comprehensive analyte information through high-dimensional *** is of great significance in the analysis of multi-component complex *** review summarizes the development and status of chemical sensor *** focused on the design of chemical sensor arrays based on various sensing *** addition,several pattern recognition methods in chemometrics are *** applications of chemical sensor arrays in food monitoring,medical diagnosis,and environmental monitoring are *** on the analysis of the limitations of current sensor array technology,the direction of the array is also *** review aims to help the broad readership understand the research state of chemical sensor arrays and their development prospects.

关键词： Chemical sensor arrays Sensing materials Pattern recognition methods Analytical application

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Effect of mutations on acetohydroxyacid synthase(AHAS)function in Cyperus difformis L.

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Journal of Integrative Agriculture 2024年第1期23卷 177-186页

作者： Xiaotong Guo Xiangju Li Zheng Li Licun Peng Jingchao Chen Haiyan Yu Hailan Cui State Key laboratory for Biology of plant Diseases and Insect Pests Institute of Plant ProtectionChinese Academy of Agricultural SciencesBeijing 100193China College of Resources and Environmental Sciences China Agricultural UniversityBeijing 100193China

Cyperus difformis *** a troublesome weed in paddy fields and has attracted attention due to its resistance to acetohydroxyacid synthase(AHAS)*** was found that the amino acid mutation in AHAS was the primary cause for the resistance of Cyperus ***,the effect of different mutations on AHAS function is not clear in Cyperus *** confirm the effect of mutations on AHAS function,six biotypes were collected,including Pro197Arg,Pro197Ser,Pro197Leu,Asp376Glu,Trp574Leu and wild type,from Hunan,Anhui,Jiangxi and Jiangsu provinces,China and the function of AHAS was *** AHAS in vitro inhibition assay results indicated that the mutations decreased the sensitivity of AHAS to pyrazosulfuron-ethyl,in which the I_(50)(the half maximal inhibitory concentration)of wild type AHAS was 0.04μmol L^(-1)and Asp376Glu,Pro197Leu,Pro197Arg,Pro197Ser and Trp574Leu mutations were 3.98,11.50,40.38,38.19 and 311.43μmol L^(-1),*** the determination of enzyme kinetics parameters,the Km and the maximum reaction velocity(Vmax)of the wild type were 5.18 mmol L^(-1)and 0.12 nmol mg^(-1)min^(-1),respectively,and the Km values of AHAS with Asp376Glu,Trp574Leu,Pro197Leu and Pro197Ser mutations were 0.38-0.93 times of the wild *** Km value of the Pro197Arg mutation was 1.14times of the wild type,and the Vmax values of the five mutations were 1.17-3.33-fold compared to the wild *** was found that the mutations increased the affinity of AHAS to the substrate,except for the Pro197Arg *** a concentration of 0.0032-100 mmol L^(-1)branched-chain amino acids(BCAAs),the sensitivity of the other four mutant AHAS biotypes to feedback inhibition decreased,except for the Pro197Arg *** study elucidated the effect of different mutations on AHAS function in Cyperus difformis and provided ideas for further study of resistance development.

关键词： acetohydroxyacid synthase(AHAS) mutation enzyme function Cyperus difformis

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Genome-wide association study reveals that JASMONATE ZIM-DOMAIN 5 regulates seed germination in rice

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The Crop Journal 2024年第4期12卷 1001-1009页

作者： Shan Sun Liling Peng Qianqian Huang Zhibo Huang Chengjing Wang Jia Zhao Zhoufei Wang Yongqi He The laboratory of Seed Science and Technology Guangdong Key Laboratory of Plant Molecular BreedingKey Laboratory for Enhancing Resource Use Efficiency of Crops in South ChinaMinistry of Agriculture and Rural AffairsSouth China Agricultural UniversityGuangzhou 510642GuangdongChina

Seed germination is a complex trait regulated by multiple genes in ***,the regulators of rice seed germination have yet to be sufficiently ***,a quantitative trait locus(QTL)for rice seed germination was identified in a genome-wide association *** candidate gene JASMONATE ZIM-DOMAIN 5(OsJAZ5)of the QTL was verified that positively regulates seed ***5 regulation of seed germination involves an OsABI3-mediated abscisic acid *** of OsJAZ5 facilitated seed *** application of OsJAZ5 might be useful for increasing seed germination for rice direct seeding.

关键词： Abscisic acid JASMONATE ZIM-DOMAIN Oryza sativa Seed germination

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