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Pharmacophore approaches in protein kinase inhibitors design

World Journal of Pharmacology 2014年第4期3卷 162-173页

作者： Sergiy A Starosyla Galyna P Volynets Volodymyr G Bdzhola Andriy G Golub Sergiy M Yarmoluk Department of Medicinal Chemistry Institute of Molecular Biology and Genetics NAS of Ukraine03680 Kyiv Ukraine otava ltd. 400 Applewood Crescent Unit 100 Vaughan Ontario L4K0C3 Canada

Protein kinases constitute a superfamily of therapeutic targets for a number of human and animal diseases that include more than 500 members accordingly to sequencing data of the human genome. The well characterized nature of protein kinases makes them excellent targets for drug development. Pharmacophore approaches have become one of the major tools in the area of drug discovery. Application of pharmacophore modeling approaches allows reducing of expensive overall cost associated with drug development project. Pharmacophore models are important functional groups of atoms in the proper spatial position for interaction with target protein. Various ligand-based and structurebased methods have been developed for pharmacophore model generation. Despite the successes in pharmacophore models generation these approaches have not reached their full capacity in application for drug discovery. In the following review, we summarize the published data on pharmacophore models for inhibitorsof tyrosine protein kinases(EGFR, HER2, VEGFR, JAK2, JAK3, Syk, ZAP-70, Tie2) and inhibitors of serine/threonine kinases(Clk, Dyrk, Chk1, IKK2, CDK1, CDK2, PLK, JNK3, GSK3, m TOR, p38 MAPK, PKB). Here, we have described the achievements of pharmacophore modeling for protein kinase inhibitors, which provide key points for further application of generated pharmacophore hypotheses in virtual screening, de novo design and lead optimization.

关键词： Protein kinase Inhibitor Pharmacophore model Receptor-based method Ligand-based method

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