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Cryptic diversity and rampant hybridization in annual gentians on the Qinghai-Tibet plateau revealed by population genomic analysis

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Plant Diversity 2024年第2期46卷 194-205页

作者： Peng-Cheng Fu Qiao-Qiao Guo Di Chang Qing-Bo Gao Shan-Shan Sun School of Life Science Luoyang Normal UniversityLuoyang 471934PR China Key Laboratory of Adaptation and Evolution of plateau Biota Northwest Institute of Plateau BiologyChinese Academy of SciencesXining 810001PR China

Understanding the evolutionary and ecological processes involved in population differentiation and speciation provides critical insights into biodiversity formation. In this study, we employed 29,865 single nucleotide polymorphisms(SNPs) and complete plastomes to examine genomic divergence and hybridization in Gentiana aristata, which is endemic to the Qinghai-Tibet plateau(QTP) region. Genetic clustering revealed that G. aristata is characterized by geographic genetic structures with five clusters(West, East, Central, South and North). The West cluster has a specific morphological character(i.e., blue corolla) and higher values of FSTcompared to the remaining clusters, likely the result of the geological barrier formed by the Yangtze River. The West cluster diverged from the other clusters in the Early Pliocene;these remaining clusters diverged from one another in the Early Quaternary. Phylogenetic reconstructions based on SNPs and plastid data revealed substantial cyto-nuclear conflicts. Genetic clustering and D-statistics demonstrated rampant hybridization between the Central and North clusters,along the Bayankala Mountains, which form the geological barrier between the Central and North clusters. Species distribution modeling demonstrated the range of G. aristata expanded since the Last Interglacial period. Our findings provide genetic and morphological evidence of cryptic diversity in G. aristata, and identified rampant hybridization between genetic clusters along a geological *** findings suggest that geological barriers and climatic fluctuations have an important role in triggering diversification as well as hybridization, indicating that cryptic diversity and hybridization are essential factors in biodiversity formation within the QTP region.

关键词： Gentiana aristata Hybrid zone Qinghai-Tibet plateau Plastome Nuclear SNPs

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Trophic niche and adaptation in highland lizards:sex has greater influences than species matching

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Integrative Zoology 2024年第3期19卷 564-576页

作者： Shengnan YANG Jiapeng QU Ke TANG Xinquan ZHAO Huakun ZHOU Junhua HU Chengdu institute of biology Chinese Academy of SciencesChengduChina Qinghai Provincial Key Laboratory of Restoration Ecology for Cold Region Northwest lnstitute of Plateau BiologyChinese Academy of SciencesXiningChina University of Chinese Academy of Sciences BeijingChina Qinghai University XiningChina

The plateau environments are typically arid,cool,and high altitude,posing formidable challenges to wildlife survival due to resource scarcity and harsh *** ecological adaptability in severe conditions requires a deeper understanding of the niche characteristics of plateau *** niche,which is a comprehensive indicator describing the energy acquisition strategy of animals,remains relatively understudied in plateau ***,by combining stable isotopes and morphological data,we quantified the trophic niches of two allopatric lizard species(Phrynocephalus vlangalii and ***)that live in the hinterland of the Qinghai–Tibetan plateau,and explored how their trophic niches correlate with morphological and environmental *** both trophic niche and morphological traits were similar between species,noteworthy distinctions were observed between male and female Phrynocephalus *** morphological traits associated with predation(*** length and head size)and reproduction(*** length),annual mean temperature,and sex played influential roles in shifting trophic *** results imply that sexual dimorphism may facilitate inter-sex divergence in resource utilization,leading to trophic niche variations in the highland ***,extreme environmental stress can constrain interspecific divergence in morphological and trophic *** findings illustrate the dynamic variations of trophic niches in highland lizards,contributing to a more comprehensive understanding of the adaptation strategies employed by lizard species in plateau environments.

关键词： environmental adaptation Phrynocephalus Qinghai-Tibetan plateau sexual dimorphism stable isotope

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Plants affect the horizontal transmission of a new densovirus infecting the green peach aphid Myzus persicae by modulating honeydew production

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Insect Science 2024年第1期31卷 236-254页

作者： Ya Guo Yani Zhao Yang Yang Yahong Zhang Yuying Li Honggang Tian Tong-Xian Liu Zhaofei Li State Key Laboratory of Crop Stress biology for Arid Areas Key Laboratory of Northwest Loess Plateau Crop Pest Management of Ministry of AgricultureCollege of Plant ProtectionNorthwest A&F UniversityYanglingChina institute of Entomology and institute of Plant Health&Medicine Guizhou UniversityGuiyangChina

In a tritrophic context of plant-insect-entomopathogen,plants play important roles in modulating the interaction of insects and their pathogenic ***,the influence of plants on the transmission of insect viruses has been mainly studied on baculoviruses and some RNA viruses,whereas the impact of plants on other insect viruses is largely ***,we identified a new densovirus infecting the green peach aphid Myzus persicae and tested whether and how host plants influence the transmission of the aphid *** complete single-stranded DNA genome of the virus,*** densovirus 2,is 5727 nt and contains inverted terminal *** and phylogenetic analysis indicated that the virus was distinct from other a few identified aphid *** virus abundance was detected highly in the intestinal tract of aphids,compared with the lower level of it in other tissues including head,embryo,and *** and pepper plants had no obvious effect on the vertical transmission and saliva-mediated horizontal transmission of the ***,the honeydew-mediated horizontal transmission among aphids highly depended on host plants(65%on cabbages versus 17%on peppers).Although the virus concentration in the honeydew produced by aphids between 2 plants was similar,the honeydew production of the infected aphids reared on peppers was dramatically *** together,our results provide evidence that plants influence the horizontal transmission of a new densovirus in an aphid population by modulating honeydew secretion of aphids,suggesting plants may manipulate the spread of an aphid-pathogenic densovirus in nature.

关键词： aphids densovirus host plants MpDV2 Myzus persicae transmission

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Alpine grassland degradation intensifies the burrowing behavior of small mammals:evidence for a negative feedback loop

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Integrative Zoology 2024年第2期19卷 240-252页

作者： Zaiwei WANG Jiawen YAN Amy MARTIN Dianne HBRUNTON Jiapeng QU Jin-Sheng HE Weihong JI Zhibiao NAN State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems College of Pastoral Agriculture Science and TechnologyLanzhou UniversityLanzhouChina Manaaki Whenua-Landcare Research LincolnNew Zealand School of Natural Sciences Massey University(Albany Campus)AucklandNew Zealand Key Laboratory of Adaptation and Evolution of plateau Biota Northwest Institute of Plateau BiologyChinese Academy of SciencesXiningChina Qinghai Haibei National Field Research Station of Alpine Grassland Ecosystem Northwest Institute of Plateau BiologyChinese Academy of SciencesXiningChina institute of Ecology College of Urban and Environmental Sciencesand Key Laboratory for Earth Surface Processes of the Ministry of EducationPeking UniversityBeijingChina

Globally,grassland degradation is an acute ecological *** alpine grassland on the Tibetan plateau,increased densities of various small mammals in degraded grassland are assumed to intensify the degradation process and these mammals are subject to lethal ***,whether the negative impact of small mammals is solely a result of population size or also a result of activity and behavior has not been *** this study,we use plateau pika as a model to compare population size,core area of colony,and the number of burrow entrances and latrines between lightly and severely degraded *** test whether the alleged contribution of pika to grassland degradation is a result of increased population size or increased burrowing activities of individuals in response to lower food *** found that grassland degradation resulted in lower plant species richness,plant height,and ***,the overall population size of pika was not significantly affected by location in lightly and severely degraded ***,pika core areas in severely grassland degradation were significantly larger and had significantly higher densities of burrows and *** study provides convincing evidence that habitat-induced changes in the behavior of small,burrowing mammals,such as pika,can exacerbate grassland *** finding has significant implications for managing small mammals and restoring degraded grassland ecosystems.

关键词： burrowing behavior grassland degradation plateau pika population size small mammals

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Persistence of fertilization effects on soil organic carbon in degraded alpine wetlands in the Yellow River source region

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Journal of Mountain Science 2024年第4期21卷 1358-1371页

作者： DUAN Peng WEI Rongyi WANG Fangping LI Yongxiao SONG Ci HU Bixia YANG Ping ZHOU Huakun YAO Buqing ZHAO Zhizhong Qinghai University Xining 810016China Qinghai Transportation Planning and Design institute Co.Ltd Xining 810000China Key Laboratory of Adaptation and Evolution of plateau Biota Chinese Academy of SciencesXining 810008China Key Laboratory of Restoration Ecology of Cold Area in Qinghai Province Northwest Institute of Plateau BiologyChinese Academy of SciencesXining 810008China Qinghai University of Science and Technology Xining 810016China

In the restoration of degraded wetlands,fertilization can improve the vegetation-soil-microorganisms complex,thereby affecting the organic carbon ***,it is currently unclear whether these effects are *** study employed Biolog-Eco surveys to investigate the changes in vegetation characteristics,soil physicochemical properties,and soil microbial functional diversity in degraded alpine wetlands of the source region of the Yellow River at 3 and 15 months after the application of nitrogen,phosphorus,and organic mixed *** following results were obtained:The addition of nitrogen fertilizer and organic compost significantly affects the soil organic carbon content in degraded *** months after fertilization,nitrogen addition increases soil organic carbon in both lightly and severely degraded wetlands,whereas after 15 months,organic compost enhanced the soil organic carbon level in severely degraded *** equation modeling indicates that fertilization decreases the soil pH and directly or indirectly influences the soil organic carbon levels through variations in the soil water content and the aboveground biomass of *** months after fertilization,nitrogen fertilizer showed a direct positive effect on soil organic ***,organic mixed fertilizer indirectly reduced soil organic carbon by increasing biomass and decreasing soil *** 15 months,none of the fertilizers significantly affected the soil organic carbon *** summary,it can be inferred that the addition of nitrogen fertilizer lacks sustainability in positively influencing the organic carbon content.

关键词： Degraded alpine wetlands Fertilizer Soil organic carbon Temporal variation Vegetation aboveground biomass Yellow River source region

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RpUGT344J7 is involved in the reproduction switch of Rhopalosiphum padi with holocyclic life cycle

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Insect Science 2024年第4期31卷 1073-1089页

作者： Suji Wang Wenjie Huang Mengtian Li Ni Wang Xi Liu Maohua Chen Xiong Peng State Key Laboratory of Crop Stress biology for Arid Areas Key Laboratory of Plant Protection Resources and Pest Management of Ministry of EducationKey Laboratory of Integrated Pest Management on the Loess Plateau of Ministry of Agriculture and Rural AffairsCollege of Plant ProtectionNorthwest A&F UniversityYanglingShaanxi ProvinceChina

Many aphid species exhibit both cyclical parthenogenesis(CP)and the obligate parthenogenesis(OP)life history,which are genetically *** CP aphid lineages,the parthenogenetic individuals can switch from asexual to sexual reproduction quickly in response to environmental factors such as changes in photoperiod and ***,the OP aphid lineages do not undergo sexual reproduction under any *** far,mechanisms underlying the reproduction switch in CP aphids have not been fully *** padi,a serious worldwide insect pest of wheat,has both CP and OP *** diphosphate-glycosyltransferases(UGTs)are enzymes that participate in the metabolic detoxification of ***,we identified 43 RpUGT genes from *** genome and transcriptome sequences,and found that:(1)the UGT content of the CP lineage was significantly higher than that in the OP lineage at the key time points when CP lineage mainly produce virginoparae,gynoparae,and males under inducing condition,while there were no significant difference under normal conditions;(2)RpUGT344J7 gene was highly expressed during the time points when CP lineages produce gynopara and males;(3)the critical time points for CP lineages to produce virginoparaee,gynoparae,and males were affected when the CP lineages were injected with dsRpUGT344J7;(4)the knockdown of RpUGT344J7 caused a significant reduction in the total number of virginoparae,gynoparae,and males in the offspring under inducing *** findings contribute to our understanding of the molecular mechanisms underlying the quick shift from asexual to sexual reproduction in aphid species.

关键词： bird cherry-oat aphid cyclical parthenogenesis obligate parthenogenesis reproduction switch uridine diphosphate-glycosyltransferases(UGTs)

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Heterogeneous population distribution enhances resistance to wheat lodging by optimizing the light environment

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Journal of Integrative Agriculture 2024年第7期23卷 2211-2226页

作者： Yibo Hu Feng Qin Zhen Wu Xiaoqin Wang Xiaolong Ren Zhikuan Jia Zhenlin Wang Xiaoguang Chen Tie Cai College of Agronomy Northwest A&F UniversityYangling 712100China Key Laboratory of Crop Physi-Ecology and Tillage Science in northwestern Loess plateau Ministry of Agriculture and Rural AffairsNorthwest A&F UniversityYangling 712100China College of Agronomy Shandong Agricultural University/State Key Laboratory of Crop BiologyTai’an 271018China Xuzhou institute of Agricultural Sciences in Jiangsu Xuhuai Area Xuzhou 221131China

Lodging is still the key factor that limits continuous increases in wheat yields today,because the mechanical strength of culms is reduced due to low-light stress in populations under high-yield *** mechanical properties of the culm are mainly determined by lignin,which is affected by the light ***,little is known about whether the light environment can be sufficiently improved by changing the population distribution to inhibit culm ***,in this study,we used the wheat cultivar“Xinong 979”to establish a low-density homogeneous distribution treatment(LD),high-density homogeneous distribution treatment(HD),and high-density heterogeneous distribution treatment(HD-h)to study the regulatory effects and mechanism responsible for differences in the lodging resistance of wheat culms under different population *** with LD,HD significantly reduced the light transmittance in the middle and basal layers of the canopy,the net photosynthetic rate in the middle and lower leaves of plants,the accumulation of lignin in the culm,and the breaking resistance of the culm,and thus the lodging index values increased significantly,with lodging rates of 67.5%in 2020–2021 and 59.3%in 2021–*** HD-h,the light transmittance and other indicators in the middle and basal canopy layers were significantly higher than those under HD,and the lodging index decreased to the point that no lodging *** with LD,the activities of phenylalanine ammonia-Lyase(PAL),4-coumarate:coenzyme A ligase(4CL),catechol-O-methyltransferase(COMT),and cinnamyl-alcohol dehydrogenase(CAD)in the lignin synthesis pathway were significantly reduced in the culms under HD during the critical period for culm formation,and the relative expression levels of TaPAL,Ta4CL,TaCOMT,and TaCAD were significantly ***,the activities of lignin synthesis-related enzymes and their gene expression levels were significantly increased under HD-h compare

关键词： canopy light environment lignin lodging population distribution wheat

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Cold and humid climates enrich soil carbon stock in the Third Pole grasslands

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The Innovation 2024年第1期5卷 9-10页

作者： Yanfen Wang Anquan Xia Kai Xue College of Resources and Environment University of Chinese Academy of SciencesBeijing 100049China Beijing Yanshan Earth Critical Zone National Research Station University of Chinese Academy of SciencesBeijing 101408China State Key Laboratory of Tibetan plateau Earth System Resources and Environment(TPESRE)Institute of Tibetan Plateau ResearchChinese Academy of SciencesBeijing 100101China State Key Laboratory of plateau Ecology and Agriculture Qinghai UniversityXining 810016China Key Laboratory of Adaptation and Evolution of plateau Biota Northwest Institute of Plateau BiologyChinese Academy of SciencesXining 810001China Binzhou institute of Technology Weiqiao-UCAS Science and Technology ParkBinzhou 256606China

As a unique geographic unit,the Third Pole is globally recognized as the largest and highest mountainous *** amounts of soil organic carbon(SOC)are stored in this region,whose top layer is active in biochemical processes and highly sensitive to environmental *** warming intensity in the Third Pole has been predicted to be at least 0.3℃ higher than the global average by the end of the 21^(st) century.1 Therefore,it is essential to understand the underlying mechanisms,especially the hydrothermal factors,controlling the top layer SOC in the Third *** may help to predict the dynamics of soil carbon stock in future climate scenarios.

关键词： soil mountainous globally

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Can soil organic carbon sequestration and the carbon management index be improved by changing the film mulching methods in the semiarid region?

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Journal of Integrative Agriculture 2024年第5期23卷 1541-1556页

作者： Jialin Yang Liangqi Ren Nanhai Zhang Enke Liu Shikun Sun Xiaolong Ren Zhikuan Jia Ting Wei Peng Zhang College of Agronomy Northwest A&F UniversityYangling 712100China Key Laboratory of Crop Physi-Ecology and Tillage Science in northwestern Loess plateau Ministry of Agriculture and Rural AfairsNorthwest A&FUniversityYangling 712100China institute of Environment and Sustainable Development in Agriculture Chinese Academy of Agricultural SciencesBeijing 100081China College of Water Resources and Architectural Engineering Northwest A&F UniversityYangling 712100China

Plastic film mulching has been widely used to increase maize yield in the semiarid area of ***, whether long-term plastic film mulching is conducive to agricultural sustainability in this region remains controversial.A field experiment was initiated in 2013 with five different film mulching methods:(i) control method, flat planting without mulching (CK),(ii) flat planting with half film mulching (P),(iii) film mulching on ridges and planting in narrow furrows(S),(iv) full film mulching on double ridges (D), and (v) film mulching on ridges and planting in wide furrows (R).The effects on soil organic carbon (SOC) content, storage, and fractions, and on the carbon management index (CMI)were evaluated after nine consecutive years of plastic film *** results showed that long-term plastic film mulching generally maintained the initial SOC *** with no mulching, plastic film mulching increased the average crop yield, biomass yield, and root biomass by 48.38, 35.06, and 37.32%, respectively, which led to the improvement of SOC ***, plastic film mulching significantly improved CMI, and increased the SOC content by 13.59%, SOC storage by 7.47%and easily oxidizable organic carbon (EOC) by 13.78%on average,but it reduced the other labile *** sequestration and CMI were improved by refining the plastic film mulching *** S treatment had the best effect among the four mulching methods, so it can be used as a reasonable film mulching method for sustainable agricultural development in the semiarid area.

关键词： plastic film mulching soil organic carbon labile organic carbon fractions semiarid area

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Unique genes carried by abundant species enhance CH_(4) emissions during the growing season at the Tibetan plateau

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Soil Ecology Letters 2024年第2期6卷 83-95页

作者： Yue Liang Liyuan He Jieying Wang Yanfang Liu Wenying Wang Chengjie Ren Jun Wang Yaoxin Guo Ninglian Wang Fazhu Zhao Shaanxi Key Laboratory of Earth Surface System and Environmental Carrying Capacity Northwest UniversityXi’an710127China College of Urban and Environmental Sciences Northwest UniversityXi’an710127China Department of biology San Diego State UniversitySan DiegoCA92182USA Key Laboratory of Biodiversity Formation Mechanism and Comprehensive Utilization in Qinghai-Tibet plateau School of Life SciencesQinghai Normal UniversityXining810008China College of Agronomy Northwest A&F UniversityYangling712100China The College of Life Sciences Northwest UniversityXi’an710072China Carbon Neutrality College (Yulin) Northwest UniversityXi’an710127China

CH_(4) emission rates followed an increased pattern during the growing season at Tibetan plateau.•Unique genes carried by abundant species were positively correlated with CH_(4) emission rates.•Climate factors influenced CH_(4) emission rates by regulating microbial community and their *** play pivotal roles in soil methane(CH_(4))emissions and their functional genes are origins of a key mechanism for soil ***,understanding of the roles of specific genes(e.g.,unique or shared genes carried by species)underlying CH_(4)-cycling remains ***,we measured CH_(4) emission rates and investigated variations in microbial community and the abundance of genes carried by species during the growing season in alpine meadow on the Tibetan *** discovered that CH_(4) emission rates increased from 394.4,745.9,and 1092.7µg CH4 m−2 h−1,in April,June,and August,respectively,and had a positive correlation with unique genes carried by abundant species during the growing ***,we found that unique genes carried by abundant species involved in methanogenesis processes have a higher abundance than methanotrophic *** analysis indicated that climate factors(i.e.,mean monthly temperature(MMT)and mean monthly precipitation(MMP))influenced microbial community and their functional genes,and therefore affected the CH_(4) emission ***,the present study provides a novel insight into the variation of soil CH4 emissions from a functional gene perspective,highlighting the important roles of unique genes carried by abundant species in CH4 emissions in the Tibetan plateau under seasonal variation.

关键词： soil CH_(4) emissions unique genes abundant species CH_(4)-cycling growing season

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