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Extreme-phenotype GWAS unravels a complex nexus between apple(Malus domestica)red-flesh colour and internal flesh browning

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Fruit Research 2022年第1期2卷 110-123页

作者： Satish Kumar Cecilia H.Deng Claire Molloy Chris Kirk Blue Plunkett Kui Lin-Wang Andrew Allan Richard Espley The new zealand Institute for Plant and Food Research Limited Hawke's Bay Research CentreHavelock North 4130New Zealand The new zealand Institute for Plant and Food Research Limited Mount Albert Research CentreAuckland 1025New Zealand The new zealand Institute for Plant and Food Research Limited Palmerston North Research CentrePalmerston North 4410New Zealand

The genetic link between apple red flesh(RF)coloration and the internal flesh browning disorder(FBD)is a major challenge when breeding high fruit quality RF apple cultivars.A genome-wide association study(GWAS)was conducted in a population of about 900 red-leaved seedlings to identify genomic regions and putative candidate genes using whole genome sequencing of the pools of extreme phenotypes(XP)for the RF colour coverage(using the weighted cortex index(WCI))and *** study identified novel genomic regions contributing to WCI and FBD variation in the red-leaved *** FBD-associated regions were enriched for genes regulating senescence,heat shock proteins,cytochrome P450,ascorbate metabolism and pectin methyl *** there were no significant regions in common for WCI and FBD,there were several genes(***85,MYB66,ethylene insensitive 3,DNAJ heat shock protein,WRKY7,and NAC42)enriched commonly between the genomic regions associated with these traits,potentially underpinning the genetic connection between WCI and *** of the differentially expressed genes between the R6:MdMYB10 and white-fleshed‘control’apples resided within the GWAS hotspot for WCI(*** synthase,UDP-Glycosyl transferase)and FBD(*** GTPase activating protein,lipoxygenase 1,phytoene synthase)–validating the XP-GWAS *** of several genes resided in the trait-associated genomic regions,suggesting that whole genome duplication plays an important role in the regulation of these *** genetic correlations between WCI and sensory traits were observed,and strategies to develop FBD-free high fruit quality RF cultivars are discussed.

关键词： cultivar breeding GWAS

Validation of SNP markers for fruit quality and disease resistance loci in apple (Malus × domestica Borkh.) using the OpenArray® platform

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Horticulture Research 2019年第1期6卷 1348-1363页

作者： David Chagné Stijn Vanderzande Chris Kirk Natalie Profitt Rosemary Weskett Susan E.Gardiner Cameron P.Peace Richard K.Volz Nahla V.Bassil The new zealand Institute for Plant&Food Research Ltd(Plant&Food Research) Palmerston North Research CentrePalmerston NorthNew Zealand Department of Horticulture Washington State UniversityPullmanWAUSA Plant&Food Research Hawke’s Bay Research CentreHavelock NorthNew Zealand USDA-ARS National Clonal Germplasm RepositoryCorvallisORUSA

Genome mapping has promised much to tree fruit breeding during the last 10 ***,one of the greatest challenges remaining to tree fruit geneticists is the translation of trait loci and whole genome sequences into diagnostic genetic markers that are efficient and cost-effective for use by breeders,who must select genetically optimal parents and subsequently select genetically superior individuals among their *** take this translational step,we designed the apple International RosBREED SNP Consortium OpenArray v1.0(IRSCOA v1.0)assay using a set of 128 apple single nucleotide polymorphisms(SNPs)linked to fruit quality and pest and disease resistance trait *** Thermo Fisher Scientific OpenArray®technology enables multiplexed screening of SNP markers using a real-time PCR instrument with fluorescent probe-based Taqman®*** validated the apple IRSCOA v1.0 multitrait assay by screening 240 phenotyped individuals from the Plant&Food Research apple cultivar breeding *** set of individuals comprised commercial and heritage cultivars,elite selections,and families segregating for traits of importance to *** total,33 SNP markers of the IRSCOA v1.0 were validated for use in marker-assisted selection(MAS)for the scab resistances Rvi2/Vh2,Rvi4/Vh4,Rvi6/Vf,fire blight resistance MR5/RLP1,powdery mildew resistance Pl2,fruit firmness,skin colour,flavour intensity,and *** availability of this set of validated trait-associated SNP markers,which can be used individually on multiple genotyping platforms available to various apple breeding programmes or re-designed using the flanking sequences,represents a large translational genetics step from genomics to crop improvement of apple.

关键词： Open resistance breeding

Posner-Schlossman syndrome induced laser in situ keratomileusis keratectasia–a case report

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International Journal of Ophthalmology(English edition) 2017年第10期10卷 1617-1619页

作者： Xiu Wang Elizabeth WL Lim Li Lim Rui-Hua Wei Tianjin Medical University eye Hospital Yong Loo Lin School of Medicine National University of Singapore Corneal and External eye Disease Service Singapore national eye centre

Iam Dr. Xiu Wang, from Tianjin Medical University eye Hospital, Tianjin, China. I write to present one case report of Posner-Schlossman syndrome （PSS） induced laser in situ keratomileusis （LASIK） keratectasia.

关键词： LASIK IOP Figure Posner-Schlossman syndrome induced laser in situ keratomileusis keratectasia a case report

Molecular characterization of intergeneric hybrids between Malus and Pyrus

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Horticulture Research 2023年第1期10卷 172-182页

作者： Giulia Pasqualetto Luisa Palmieri Stefan Martens Vincent G.M.Bus David Chagné Claudia Wiedow Mickael A.Malnoy Susan E.Gardiner Research and Innovation centre Edmund Mach FoundationSan Michele all’AdigeTN 38010Italy Department of Agricultural FoodEnvironmental and Animal SciencesUniversity of UdineUD 33100Italy The new zealand Institute for Plant and Food Research Ltd(PFR) Hawke’s Bay Research CentreHavelock North 4442New Zealand PFR Fitzherbert Science CentrePalmerston NorthNew Zealand

Apple(Malus)and pear(Pyrus)are economically important fruit crops well known for their unique textures,f lavours,and nutritional *** genera are characterised by a distinct pattern of secondary metabolites,which directly affect not only resistance to certain diseases,but also have significant impacts on the f lavour and nutritional value of the *** identical chromosome numbers,similar genome size,and their recent divergence date,together with DNA markers have shown that apple and pear genomes are highly *** study utilized comparative genomic approaches,including simple sequence repeats,high resolution single nucleotide polymorphism melting analysis,and single nucleotide polymorphism chip analysis to identify genetic differences among hybrids of Malus and Pyrus,and F2 *** research has demonstrated and validated that these three marker types,along with metabolomics analysis are very powerful tools to detect and confirm hybridity of progeny derived from crosses between apple and pear in both cross ***,this work analysed the genus-specific metabolite patterns and the resistance to fire blight(Erwinia amylovora)in *** findings of this work will enhance and accelerate the breeding of novel tree fruit crops that benefit producers and consumers,by enabling marker assisted selection of desired traits introgressed between pear and apple.

关键词： crops utilized breeding

Chromosomal localization of ribosomal DNA sequences in an apple rootstock using a digoxygenin detection system

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Cell Research 1995年第1期5卷 1-7页

作者： ZHU JIMEI S E GARDINER (The Horticulture and Food Research Institute of new zealand Limited) (Mt Albert Research centre, Privatc Bag 92 169, Auck-land, new zealand)(Batchelar Research centre, Private Bag 11 030,Palmerston North, new zealand) The Horticulture and Food Research Institute of new zealand Limited Mt Albert Research centre Auckland New Zealand Batchelar Research centre Palmerston North New Zealand

A 6kb rDNA probe comprising the 18S coding plusspacer sequences has been hybridized to the metaphase chromosomes of apple rootstock cultivar MM106 demon-strating the localization of ribosomal gene arrays in the vicinity of the telomeric regions of the short arms of chro-mosomes 6 and 14. The in situ results using digoxygenin labelling coupled to an alkaline phosphatase immunoassay were confirmed by silver staining for NORs and nucleoli. This study demonstrates the feasibility of molecular cyto-genetic analysis of very small chromosomes (1.0-2.7μm)of apple.

关键词： Malus chromosomes in situ hybridization karyotype analysis silver staining

Photobiomodulation:a novel approach to promote trans-differentiation of adipose-derived stem cells into neuronal-like cells

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Neural Regeneration Research 2025年第2期20卷 598-608页

作者： Daniella Da Silva Madeleen Jansen van Rensburg Anine Crous Heidi Abrahamse Laser Research centre Faculty of Health SciencesUniversity of JohannesburgDoornfonteinJohannesburgSouth Africa

Photobiomodulation,originally used red and near-infrared lasers,can alter cellular *** has been demonstrated that the visible spectrum at 451-540 nm does not necessarily increase cell proliferation,near-infrared light promotes adipose stem cell proliferation and affects adipose stem cell migration,which is necessary for the cells homing to the site of *** this in vitro study,we explored the potential of adipose-derived stem cells to differentiate into neurons for future translational regenerative treatments in neurodegenerative disorders and brain *** investigated the effects of various biological and chemical inducers on trans-differentiation and evaluated the impact of photobiomodulation using 825 nm near-infrared and 525 nm green laser light at 5 J/*** adipose-derived stem cells can be used in autologous grafting and photobiomodulation has been shown to have biostimulatory *** findings reveal that adipose-derived stem cells can indeed trans-differentiate into neuronal cells when exposed to inducers,with pre-induced cells exhibiting higher rates of proliferation and trans-differentiation compared with the control ***,green laser light stimulation led to notable morphological changes indicative of enhanced trans-differentiation,while near-infrared photobiomodulation notably increased the expression of neuronal *** biochemical analysis and enzyme-linked immunosorbent assays,we observed marked improvements in viability,proliferation,membrane permeability,and mitochondrial membrane potential,as well as increased protein levels of neuron-specific enolase and ciliary neurotrophic ***,our results demonstrate the efficacy of photobiomodulation in enhancing the trans-differentiation ability of adipose-derived stem cells,offering promising prospects for their use in regenerative medicine for neurodegenerative disorders and brain injuries.

关键词： differentiation inducers green photobiomodulation immortalized adipose-derived stem cell near-infrared photobiomodulation neurodegenerative disease neurogenesis photobiomodulation trans-differentiation

维普期刊数据库

Hybridization of graphene-reinforced two polymer nanocomposites

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International Journal of Smart and Nano Materials 2016年第3期7卷 179-201页

作者： Velram Balaji Mohan Krishnan Jayaraman Debes Bhattacharyya centre for Advanced Composite Materials Department of Mechanical EngineeringThe University of AucklandAucklandNew Zealand

This article focuses on the hybridization of thermoplastic polymer matrices with conducting polymers and graphene ***(PP),polymethylmethacrylate(PMMA)and polyox-ymethylene(POM)were used as primary polymer matrices and polypyrrole(PPY)and polyaniline(PANI)as secondary conducting *** conductive-reduced graphene oxide(rGO)and graphene(G)have been used as reinforcements.A Taguchi analy-sis has been performed for the blends to find the optimal combi-nation of the blends with respect to electrical conductivity(σ)and mechanical *** electrical and mechanical properties were improved by the hybridization *** maximum elec-trical conductivity of 0.85 ***^(−1) has been acquired with POM/PPY/G blend with 3 wt.%and 5 wt.%of PPY and graphene load-ing,*** mechanical properties have been found to improve with all the blends but,PP/PPY/G blend with 3 wt.%and 6 wt.%of PPY and graphene loading displays overall better prop-erties in comparison with other blends.

关键词： Hybridization graphene composites electrical conductivity ultimate tensile strength statistical analysis crystallinity morphology

Genome-wide association studies of lactation yields of milk, fat, protein and somatic cell score in new zealand dairy goats

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Journal of Animal Science and Biotechnology 2020年第4期11卷 937-949页

作者： Megan Scholtens Andrew Jiang Ashley Smith Mathew Littlejohn Klaus Lehnert Russell Snell Nicolas Lopez-Villalobos Dorian Garrick Hugh Blair AL Rae centre for Genetics and Breeding School of AgricultureMassey UniversityPalmerston NorthNew Zealand Applied Translational Genetics Group School of Biological SciencesThe University of AucklandAucklandNew Zealand Research and Development Livestock Improvement CorporationRuakura RoadHamiltonNew Zealand.

Background: Identifying associations between genetic markers and traits of economic importance will provide practical benefits for the dairy goat industry, enabling genomic prediction of the breeding value of individuals, and facilitating discovery of the underlying genes and mutations. Genome-wide association studies were implemented to detect genetic regions that are significantly associated with effects on lactation yields of milk(MY), fat(FY),protein(PY) and somatic cell score(SCS) in new zealand dairy ***: A total of 4,840 goats were genotyped with the Caprine 50 K SNP chip(Illumina Inc., San Diego, CA).After quality filtering, 3,732 animals and 41,989 SNPs were analysed assuming an additive linear model. Four GWAS models were performed, a single-SNP additive linear model and three multi-SNP Bayes C models. For the single-SNP GWAS, SNPs were fitted individually as fixed covariates, while the Bayes C models fit all SNPs simultaneously as random effects. A cluster of significant SNPs were used to define a haplotype block whose alleles were fitted as covariates in a Bayesian model. The corresponding diplotypes of the haplotype block were then fit as class variables in another Bayesian ***: Across all four traits, a total of 43 genome-wide significant SNPs were detected from the SNP GWAS. At a genome-wide significance level, the single-SNP analysis identified a cluster of variants on chromosome 19 associated with MY, FY, PY, and another cluster on chromosome 29 associated with SCS. Significant SNPs mapped in introns of candidate genes(45%), in intergenic regions(36%), were 0–5 kb upstream or downstream of the closest gene(14%) or were synonymous substitutions(5%). The most significant genomic window was located on chromosome 19 explaining up to 9.6% of the phenotypic variation for MY, 8.1% for FY, 9.1% for PY and 1% for ***: The quantitative trait loci for yield traits on chromosome 19 confirms reported findings in other dairy goat p

关键词： Dairy goat GWAS Milk production new zealand QTL

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Strategies for fast breeding and improvement of Actinidia species

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Horticulture Research 2023年第3期10卷 266-270页

作者： Dinum Herath Tianchi Wang Charlotte Voogd Yongyan Peng Mikaela Douglas Joanna Putterill Erika Varkonyi-Gasic Andrew C.Allan The new zealand Institute for Plant and Food Research Limited(Plant&Food Research)Mt Albert Private Bag 92169Auckland Mail CentreAuckland 1142New Zealand School of Biological Sciences University of AucklandPrivate Bag 92019AucklandNew Zealand

Perspective Ensuring food security for a rapidly growing world population will need new *** include speed breeding and new breeding technologies,which have been established for major staple *** of woody perennial fruit tree species has progressed at a much slower pace and has met many *** fruit production will face major challenges with climate change,such as the loss of winter chilling needed for f lowering,a potential decrease in pollinator availability,and increasing pest and disease *** chinensis(kiwifruit)is an important fresh fruit crop,with varieties only several generations removed from the wild accessions and carrying only a fraction of the available genetic diversity[1,2].Improvement of traits such as fruit quality and storage,and resistance to emergent diseases underpin the breeding efforts,which are hampered by a long generation time,large plant size,dependence on chilling for budbreak and f lowering,dioecy and different ploidy *** addition to kiwifruit,the genus Actinidia consists of more than 50 species with edible fruit,all showing tremendous potential as future fruit crops[3].Their fast domestication and improvement will enable production of high-quality healthy fruit,contributing to food security in the changing climate conditions.

关键词： breeding crops removed