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A dual-RPA based lateral flow strip for sensitive,on-site detection of CP4-EPSPS and Cry1Ab/Ac genes in genetically modified crops

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Food Science and Human Wellness 2024年第1期13卷 183-190页

作者： Jinbin Wang Yu Wang Xiuwen Hu Yifan Chen Wei Jiang Xiaofeng Liu Juan Liu Lemei Zhu Haijuan Zeng Hua Liu Key Laboratory of Agricultural Genetics and Breeding Institute of Biotechnology ResearchShanghai Academy of Agricultural SciencesShanghai 201106China Crops Ecological Environment Security Inspection and Supervision Center(Shanghai) Ministry of Agriculture and Rural AffairsShanghai 201106China school of Life Science and Engineering Lanzhou University of TechnologyLanzhou 730050China school of Public Health Changsha Medical UniversityChangsha 410219China Academician Workstation Changsha Medical UniversityChangsha 410219China

Traditional transgenic detection methods require high test conditions and struggle to be both sensitive and *** this study,a one-tube dual recombinase polymerase amplification(RPA)reaction system for CP4-EPSPS and Cry1Ab/Ac was proposed and combined with a lateral flow immunochromatographic assay,named“Dual-RPA-LFD”,to visualize the dual detection of genetically modified(GM)*** which,the herbicide tolerance gene CP4-EPSPS and the insect resistance gene Cry1Ab/Ac were selected as targets taking into account the current status of the most widespread application of insect resistance and herbicide tolerance traits and their stacked *** diluted plasmids,transgenic standards,and actual samples were used as templates to conduct sensitivity,specificity,and practicality assays,*** constructed method achieved the visual detection of plasmid at levels as low as 100 copies,demonstrating its high *** addition,good applicability to transgenic samples was observed,with no cross-interference between two test lines and no influence from other *** conclusion,this strategy achieved the expected purpose of simultaneous detection of the two popular targets in GM crops within 20 min at 37°C in a rapid,equipmentfree field manner,providing a new alternative for rapid screening for transgenic assays in the field.

关键词： Genetically modifi ed crops On-site detection Lateral fl ow test strips Dual recombinase polymerase amplification (RPA)

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Impacts of electrochemical disinfection on the viability and structure of the microbiome in secondary effluent water

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Frontiers of Environmental Science & Engineering 2024年第5期18卷 73-83页

作者： Marvin Yeung Lan Tian Yuhong Liu Hairong Wang Jinying Xi Environmental Simulation and Pollution Control State Key Joint Laboratory School of EnvironmentTsinghua UniversityBeijing100084China Graduate school at Shenzhen Tsinghua UniversityShenzhen518055China

Electrochemical disinfection(ECD)is a promising disinfection technique for wastewater reclamation;however,the impacts of ECD on the microbiome in secondary effluent wastewater remain *** this study,Propidium monoazide-qPCR(PMA-qPCR)and the plate count method were used to evaluate the inactivation performance,and the PMA-16S rRNA gene sequences of living cells were targeted to study the microbiome.A discrepancy was found between PMA-qPCR and the plate count method in the evaluation of cell count,with increases of 1.5 to 2.2 orders of magnitude in the disinfection rate after 150 s of ***,the cell count recovered and occasionally exceeded original levels within 3 d after *** was suppressed after ECD,but the microbiome after 150 s disinfection retained a higher level of evenness and stability in the community with a median Shannon index(>3.7).Pathogenic bacteria remained high in relative abundance even after 150 s of 25 V disinfection,but the biofilm-forming population was effectively suppressed by *** co-occurrence network revealed a centralized and fragile network as disinfection persisted,demonstrating the destabilizing effects of ECD on the *** pathways for cell membrane synthesis and organic compound degradation were enriched after *** reaction of the microbiome after ECD was similar to other disinfection techniques in terms of community structure.

关键词： Electrochemical disinfection Secondary effluent Microbiome

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Experimental and numerical study of buckling-restrained braces configured with out-of-plane eccentricity under cyclic loading

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Earthquake Engineering and Engineering Vibration 2024年第4期23卷 957-971页

作者： Cao, Yongsheng Zhou, Yun Takagi, Jiro Jiang, Ke Deng, Xuesong Fang, Xiaojun Earthquake Engineering Research & Test Center Guangzhou University Guangzhou China Guangdong Provincial Key Laboratory of Earthquake Engineering and Applied Technology Guangzhou China Key Laboratory of Earthquake Resistance Earthquake Mitigation and Structural Safety Ministry of Education Guangzhou China school of Civil Engineering Guangzhou University Guangzhou China Graduate school of Urban Environmental sciences Tokyo Metropolitan University Tokyo Japan Department of Civil and Natural Resources Engineering University of Canterbury Christchurch New Zealand

This study focuses on variations in the hysteretic behavior of buckling-restrained braces (BRBs) configured with or without out-of-plane eccentricity under cyclic loading. Quasi-static experiments and numerical simulations were carried out on concentrically and eccentrically loaded BRB specimens to investigate the mechanical properties, energy dissipation performance, stress distribution, and high-order deformation pattern. The experimental and numerical results showed that compared to the concentrically loaded BRBs, the stiffness, yield force, cumulated plastic ductility (CPD) coefficient, equivalent viscous damping coefficient and energy dissipation decreased, and the yield displacement and compression strength adjustment factor increased for the eccentrically loaded BRBs. With the existence of the out-of-plane eccentricity, the initial yield position changes from the yield segment to the junction between the yield segment and transition segment under a tensile load, while the initial high-order buckling pattern changes from a first-order C-shape to a second-order S-shape under a compressive load.

关键词： buckling-restrained brace out-of-plane eccentricity experiment numerical simulation mechanical properties

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Preoperative serum cortisone levels are associated with cognition in preschool‑aged children with tetralogy of Fallot after corrective surgery:new evidence from human populations and mice

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World Journal of Pediatrics 2024年第2期20卷 173-184页

作者： Si-Yu Ma Yu-Ting Liu Yue-Shuang Cun Qiang Wang Ming-Cui Fu Ke-De Wu Xin-Yu Cai Shu-Ting Cheng Nishant Patel Min Da Liang Hu Zhuoga Deqin Xue-Jun Kang Ming Yang Xu-Ming Mo Department of Cardiothoracic Surgery Children’s Hospital of Nanjing Medical University72 Guangzhou RoadNanjing 210008China Department of Radiology Children’s Hospital of Nanjing Medical University72 Guangzhou RoadNanjing 210008China Key Laboratory of Child Development and Learning Science Research Center For Learning ScienceSchool of Biological Sciences&Medical EngineeringMinistry of EducationSoutheast UniversityNanjing 210096China Medical school of Nanjing University Nanjing 210093China

Background Tetralogy of Fallot(TOF)is the most common cyanotic congenital heart *** with TOF would be confronted with neurological impairment across their *** study aimed to identify the risk factors for cerebral morphology changes and cognition in postoperative preschool-aged children with *** We used mass spectrometry(MS)technology to assess the levels of serum metabolites,Wechsler preschool and primary scale of intelligence-Fourth edition(WPPSI-Ⅳ)index scores to evaluate neurodevelopmental levels and multimodal magnetic resonance imaging(MRI)to detect cortical morphological *** Multiple linear regression showed that preoperative levels of serum cortisone were positively correlated with the gyrification index of the left inferior parietal gyrus in children with TOF and negatively related to their lower visual spaces index and nonverbal ***,preoperative SpO_(2) was negatively correlated with levels of serum cortisone after adjusting for all ***,after intervening levels of cortisone in chronic hypoxic model mice,total brain volumes were reduced at both postnatal(P)11.5 and P30 *** Our results suggest that preoperative serum cortisone levels could be used as a biomarker of neurodevelopmental impairment in children with *** study findings emphasized that preoperative levels of cortisone could influence cerebral development and cognition abilities in children with TOF.

关键词： Cognition Cortisone MRI Neurodevelopment Tetralogy of Fallot

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Metabolic cell death in cancer:ferroptosis,cuproptosis,disulfidptosis,and beyond

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Protein & Cell 2024年第9期15卷 642-660页

作者： Chao Mao Min Wang Li Zhuang Boyi Gan Department of Experimental Radiation Oncology The University of Texas MD Anderson Cancer CenterHoustonTX 77030USA Department of Molecular and Cellular Biology Baylor College of MedicineHoustonTX 77030USA The University of Texas MD Anderson UTHealth Graduate school of Biomedical sciences HoustonTX 77030USA

Cell death resistance represents a hallmark of *** studies have identified metabolic cell death as unique forms of regulated cell death resulting from an imbalance in the cellular *** review discusses the mechanisms of metabolic cell death—ferroptosis,cuproptosis,disulfidptosis,lysozincrosis,and alkaliptosis—and explores their potential in cancer *** review underscores the complexity of the metabolic cell death pathways and offers insights into innovative therapeutic avenues for cancer treatment.

关键词： cell death cancer treatment ferroptosis cuproptosis disulfidptosis

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Post-layout simulation driven analog circuit sizing

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Science China(Information sciences) 2024年第4期67卷 289-300页

作者： Xiaohan GAO Haoyi ZHANG Siyuan YE Mingjie LIU David Z.PAN Linxiao SHEN Runsheng WANG Yibo LIN Ru HUANG school of Integrated Circuits Peking University school of Computer Science Peking University Department of Electrical and Computer Engineering University of Texas at Austin Institute of Electronic Design Automation Peking University

Post-layout simulation provides accurate guidance for analog circuit design, but post-layout performance is hard to be directly optimized at early design stages. Prior work on analog circuit sizing often utilizes pre-layout simulation results as the optimization objective. In this work, we propose a post-layoutsimulation-driven(post-simulation-driven for short) analog circuit sizing framework that directly optimizes the post-layout simulation performance. The framework integrates automated layout generation into the optimization loop of transistor sizing and leverages a coupled Bayesian optimization algorithm to search for the best post-simulation performance. Experimental results demonstrate that our framework can achieve over 20% better post-layout performance in competitive time than manual design and the method that only considers pre-layout optimization.

关键词： analog EDA transistor sizing Bayesian optimization post-layout simulation

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Quinoidal conjugated materials:Design strategies and thermoelectric applications

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Nano Research Energy 2024年第1期3卷 220-235页

作者： Runshi Wu Dafei Yuan Xiaozhang Zhu Beijing national Laboratory for Molecular sciences CAS Key Laboratory of Organic SolidsInstitute of ChemistryChinese Academy of SciencesBeijing 100190China school of Chemical sciences University of Chinese Academy of SciencesBeijing 100049China College of Materials Science and Engineering Hunan UniversityChangsha 410082China

The growing demand for waste heat energy recovery from electronic devices,solar energy,and industrial production has led to increased attention on thermoelectric *** the past decades,significant progress has been achieved in inorganic thermoelectric ***,flexible,lightweight,and bio-friendly organic thermoelectric(OTE)materials have emerged as promising candidates for thermoelectric *** particular,quinoidal conjugated small molecules and polymers with high mobility are suitable for thermoelectric *** kind of materials have gained increasing research interest due to their unique structural features and characteristics of polarons’***,quinoidal materials with high mobility and conductivity have been developed,and their use for thermoelectric conversion has been increasingly *** perspective summarizes the recent advancements in the design and synthesis of quinoidal conjugated small molecules and polymers,their advantages for thermoelectric conversion,and the latest reports on their charge carrier transport ***,to further enhance the TE performances of quinoidal materials,the existing challenges are discussed and the future developments are also outlooked.

关键词： organic semiconductors organic conjugated materials quinoid organic materials organic thermoelectric

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De-biased knowledge distillation framework based on knowledge infusion and label de-biasing techniques

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Journal of Electronic Science and Technology 2024年第3期22卷 57-68页

作者： Yan Li Tai-Kang Tian Meng-Yu Zhuang Yu-Ting Sun school of Economics and Management University of Electronic Science and Technology of ChinaChengdu611731China school of Economics and Management Beijing University of Posts and TelecommunicationBeijing100876China school of Electrical Engineering and Computer Science The University of QueenslandBrisbane4072Australia

Knowledge distillation,as a pivotal technique in the field of model compression,has been widely applied across various ***,the problem of student model performance being limited due to inherent biases in the teacher model during the distillation process still *** address the inherent biases in knowledge distillation,we propose a de-biased knowledge distillation framework tailored for binary classification *** the pre-trained teacher model,biases in the soft labels are mitigated through knowledge infusion and label de-biasing *** on this,a de-biased distillation loss is introduced,allowing the de-biased labels to replace the soft labels as the fitting target for the student *** approach enables the student model to learn from the corrected model information,achieving high-performance deployment on lightweight student *** conducted on multiple real-world datasets demonstrate that deep learning models compressed under the de-biased knowledge distillation framework significantly outperform traditional response-based and feature-based knowledge distillation models across various evaluation metrics,highlighting the effectiveness and superiority of the de-biased knowledge distillation framework in model compression.

关键词： De-biasing Deep learning Knowledge distillation Model compression

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An Advanced Image Processing Technique for Backscatter-Electron Data by Scanning Electron Microscopy for Microscale Rock Exploration

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Journal of Earth Science 2024年第1期35卷 301-305页

作者： Zhaoliang Hou Kunfeng Qiu Tong Zhou Yiwei Cai Frontiers Science Center for Deep-time Digital Earth China University of GeosciencesBeijing 100083China Department of Geology University of ViennaVienna 1090Austria State Key Laboratory of Geological Processes and Mineral Resources School of Earth Sciences and ResourcesChinaUniversity of GeosciencesBeijing 100083China

Backscatter electron analysis from scanning electron microscopes(BSE-SEM)produces high-resolution image data of both rock samples and thin-sections,showing detailed structural and geochemical(mineralogical)*** allows an in-depth exploration of the rock microstructures and the coupled chemical characteristics in the BSE-SEM image to be made using image processing *** image processing is a powerful tool for revealing the more subtle data“hidden”in a picture,it is not a commonly employed method in geoscientific microstructural ***,we briefly introduce the general principles of image processing,and further discuss its application in studying rock microstructures using BSE-SEM image data.

关键词： Image processing rock microstructures electron-based imaging data mining

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Chromosome-scale genomes of Quercus sichourensis and Quercus rex provide insights into the evolution and adaptation of Fagaceae

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Journal of Genetics and Genomics 2024年第5期51卷 554-565页

作者： Xue Liu Weixiong Zhang Yongting Zhang Jing Yang Peng Zeng Zunzhe Tian Weibang Sun Jing Cai Shaanxi Key Laboratory of Qinling Ecological Intelligent Monitoring and Protection School of Ecology and EnvironmentNorthwestern Polytechnical UniversityXi'anShaanxi 710072China Yunnan Key Laboratory for Integrative Conservation of Plant Species with Extremely Small Populations Kunming Institute of BotanyChinese Academy of SciencesKunmingYunnan 650201China

The Fagaceae,a plant family with a wide distribution and diverse adaptability,has garnered significant interest as a subject of study in plant speciation and ***,certain Fagaceae species are regarded as highly valuable wood resources due to the exceptional quality of their *** this study,we present two high-quality,chromosome-scale genome sequences for Quercus sichourensis(848.75 Mb)and Quercus rex(883.46 Mb).Comparative genomics analysis reveals that the difference in the number of plant disease resistance genes and the nonsynonymous and synonymous substitution ratio(Ka/Ks)of protein-coding genes among Fagaceae species are related to different environmental ***,most genes related to starch synthesis in the investigated Quercoideae species are located on a single chromosome,as compared to the outgroup species,Fagus ***,resequencing and population analysis of *** and *** reveal that *** has lower genetic diversity and higher deleterious mutations compared to *** high-quality,chromosome-level genomes and the population genomic analysis of the critically endangered *** and *** will provide an invaluable resource as well as insights for future study in these two species,even the genus Quercus,to facilitate their conservation.

关键词： Adaptation Quercus sichourensis Quercusrex Chromosome-scale genome assembly Tandem duplication genes Extremely small populations

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