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Association between Per and Polyfluoroalkyl Substance and Abdominal Fat Distribution:A Trait Spectrum Exposure Pattern and Structure-Based Investigation

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Biomedical and Environmental Sciences 2025年第1期38卷 3-14页

作者： Zhi Li Shilin Shan Chenyang Song Chengzhe Tao Hong Qian Qin Yuan Yan Zhang Qiaoqiao Xu Yufeng Qin Yun Fan Chuncheng Lu State Key Laboratory of Reproductive Medicine Center for Global HealthSchool of Public HealthNanjing Medical UniversityNanjing 211166JiangsuChina Key Laboratory of Modern Toxicology of Ministry of Education School of Public HealthNanjing Medical UniversityNanjing 211166JiangsuChina Department of Public Health Kangda College of Nanjing Medical UniversityLianyungang 222000JiangsuChina Department of microbes and Infection School of Public HealthNanjing Medical UniversityNanjing 211166JiangsuChina

Objective To investigate the associations between eight serum per-and polyfluoroalkyl substances(PFASs)and regional fat depots,we analyzed the data from the National Health and Nutrition Examination Survey(NHANES)2011-2018 *** Multiple linear regression models were developed to explore the associations between serum PFAS concentrations and six fat compositions along with a fat distribution score created by summing the concentrations of the six fat *** associations between structurally grouped PFASs and fat distribution were assessed,and a prediction model was developed to estimate the ability of PFAS exposure to predict obesity *** Among females aged 39-59 years,trunk fat mass was positively associated with perfluorooctane sulfonate(PFOS).Higher concentrations of PFOS,perfluorohexane sulfonate(PFHxS),perfluorodecanoate(PFDeA),perfluorononanoate(PFNA),and n-perfluorooctanoate(n-PFOA)were linked to greater visceral adipose tissue in this *** men,exposure to total perfluoroalkane sulfonates(PFSAs)and long-chain PFSAs was associated with reductions in abdominal fat,while higher abdominal fat in women aged 39-59 years was associated with short-chain *** prediction model demonstrated high accuracy,with an area under the curve(AUC)of 0.9925 for predicting obesity *** PFAS exposure is associated with regional fat distribution,with varying effects based on age,sex,and PFAS *** findings highlight the potential role of PFAS exposure in influencing fat depots and obesity risk,with significant implications for public *** prediction model provides a highly accurate tool for assessing obesity risk related to PFAS exposure.

关键词： Per-and polyfluoroalkyl substances Regional fat depots Obesity Structure-based NHANES

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Contribution of fungal biomass to persistent soil carbon across natural ecosystems

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Science China Earth Sciences 2025年第2期68卷 444-456页

作者： Xiang WANG Guang-Hui YU Yakov KUZYAKOV Bo-Hao YIN Andreas KAPPLER Cong-Qiang LIU Bohai Coastal Critical Zone National Observation and Research Station Institute of Surface-Earth System ScienceSchool of Earth System ScienceTianjin Key Laboratory of Earth Critical Zone Science and Sustainable Development in Bohai RimTianjin UniversityTianjin 300072China Department of Soil Science of Temperate Ecosystems Department of Agricultural Soil ScienceUniversity of GöttingenGöttingen 37077Germany Agro-Technological Institute Peoples Friendship University of Russia(RUDN University)Moscow 117198Russia Geomicrobiology Center for Applied GeosciencesUniversity of TübingenTübingen 72076Germany Cluster of Excellence EXC 2124 Controlling Microbes to Fight InfectionUniversity of TübingenTübingen 72076Germany

Fungi are known to be crucial in the formation and stabilization of soil organic matter through their exudates and dead residues(necromass).Yet,it remains unclear how fungi contribute to the persistence of carbon in soils over millennial scales across ***,this study fills the knowledge gap by linking fungal carbon stocks with minerals-associated carbon stocks across major biomes.A strong correlation between fungal biomass and reactive mineral-associated carbon stocks in soils across six biomes supports the substantial role of fungi in soil carbon persistence at the global *** spatial resolution nanoscale secondary ion mass spectrometry revealed that fungi may stabilize carbon by forming organo-mineral associations through their close physical connection to reactive minerals and weathered *** propose a conceptual model that emphasizes the dualistic role of hypha-mineral interactions:(i)fungi accelerate organic matter decomposition by producing reactive oxygen species on the hypha-mineral interfaces,and(ii)fungi stabilize their residues on mineral surfaces,leading to millennial scale persistence of soil ***,fungi play a fundamental role in ecosystems that extends beyond the decomposition of persistent *** are crucial in stabilizing carbon on mineral surfaces,thereby facilitating the long-term removal of carbon from rapid biotic cycling.

关键词： Biogeography Fungi Mineral-associated organic matter(MAOM) Reactive minerals Soil carbon stability NanoSIMS

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Microbial D-amino acids and marine carbon storage

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Science China Earth Sciences 2016年第1期59卷 17-24页

作者： ZHANG Zi Lian ZHENG Qiang JIAO Nian Zhi State Key Laboratory of Marine Environmental Science Institute of Marine Microbes and EcospheresXiamen University

In nature, there are two conformational types of amino acids: L- and D-isomers. The L-amino acids are the predominant form and are used mainly for protein synthesis, while the D-amino acids are few in quantity but more diverse in terms of their biological functions. D-amino acids are produced by many marine microbes, which are important players in carbon and energy cycles in the ocean. As the major constituent of the marine organic carbon pool, D-amino acids can persist in the water column for a long time before being further transformed by chemical or biological processes or transported through physical processes(such as absorption and aggregation). This article reviews the microbial synthesis of D-amino acids, their physiological function and metabolism in microbes, and the contribution of D-amino acids as a carbon source to the oceanic carbon reservoir.

关键词： Microbe D-amino acid Dissolved organic carbon Marine carbon storage

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Cu(Ⅱ), Fe(Ⅲ) and Mn(Ⅱ) combinations as environmental stress factors have distinguishing effects on Enterococcus hirae

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Journal of Environmental Sciences 2015年第2期27卷 95-100页

作者： Zaruhi Vardanyan Armen Trchounian Department of Biophysics Faculty of Biology Yerevan State University Department of Microbiology Plants and Microbes Biotechnology Faculty of Biology Yerevan State University

Pollution by various heavy metals as environmental stress factors might affect bacteria. It was established that iron（Fe（Ⅲ））, manganese（Mn（Ⅱ）） and copper（Cu（Ⅱ）） ion combinations caused effects on Enterococcus hirae that differed from the sum of the effects when the metals were added separately. It was shown that the Cu2＋–Fe3＋combination decreased the growth and ATPase activity of membrane vesicles of wild-type E. hirae ATCC9790 and atp D mutant（with defective FoF1-ATPase） MS116. Addition of Mn2＋–Fe3＋combinations within the same concentration range had no effects on growth compared to control（without heavy metals）. ATPase activity was increased in the presence of Mn2＋–Fe3＋, while together with0.2 mmol/L N,N′-dicyclohexylcarbodiimide（DCCD）, ATPase activity was decreased compared to control（when only 0.2 mmol/L DCCD was present）. These results indicate that heavy metals ion combinations probably affect the FOF1-ATPase, leading to conformational changes. Moreover the action may be direct or be mediated by environment redox *** effects observed when Fe3＋was added separately disappeared in both cases, which might be a result of competing processes between Fe3＋and other heavy metals. These findings are novel and improve the understanding of heavy metals ions effects on bacteria,and could be applied for regulation of stress response patterns in the environment.

关键词： Heavy metal ions Environmental stress Bacterial growth ATPase activity Enterococci

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The diversity and evolution of retroviruses:Perspectives from viral“fossils”

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Virologica Sinica 2022年第1期37卷 11-18页

作者： Jialu Zheng Yutong Wei Guan-Zhu Han Jiangsu Key Laboratory for microbes and Functional Genomics College of Life SciencesNanjing Normal UniversityNanjing210023China

Retroviruses exclusively infect vertebrates,causing a variety of *** replication of retroviruses requires reverse transcription and integration into host *** infecting germline cells,retroviruses become inherited vertically,forming endogenous retroviruses(ERVs).ERVs document past viral infections,providing molecular fossils for studying the evolutionary history of *** this review,we summarize the recent advances in understanding the diversity and evolution of retroviruses from the perspectives of viral fossils,and discuss the effects of ERVs on the evolution of host biology.

关键词： Retroviruses Endogenous retroviruses(ERVs) Origin and evolution Diversity

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Genomic Characterization of the First Sequenced Clinical Legionella micdadei Isolate from China

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Biomedical and Environmental Sciences 2023年第2期36卷 185-190页

作者： CHEN Ai Ping ZHANG Yong Jun Chongqing Medical and Pharmaceutical College Chongqing 401331China Chongqing Municipal Key Laboratory for High Pathogenic microbes Chongqing 400042China

Since Legionella pneumophila(***)was identified in 1976 as the causative microorganism for severe pneumonia termed Legionnaires Disease(LD),more than 65 species belonging to the genus Legionella have been isolated worldwide[1].Approximately 20 Legionella *** been documented to be pathogenic in humans,primarily leading to transient flu-like illness(Pontiac fever)or rapid and potentially fatal pneumonia(LD).

关键词： Clinical primarily transient

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MakeHub:Fully Automated Generation of UCSC Genome Browser Assembly Hubs

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Genomics, Proteomics & Bioinformatics 2019年第5期17卷 546-549页

作者： Katharina Jasmin Hoff University of Greifswald Institute for Mathematics and Computer Science17489 GreifswaldGermany University of Greifswald Center for Functional Genomics of Microbes17489 GreifswaldGermany

Novel genomes are today often annotated by small consortia or individuals whose background is not from *** audience requires tools that are easy to *** need has been addressed by several genome annotation tools and *** resulting annotation is a crucial step of quality *** UCSC Genome Browser is a powerful and popular genome visualization *** Hubs,which can be hosted on any publicly available web server,allow browsing genomes via UCSC Genome Browser *** steps for creating custom Assembly Hubs are well documented and the required tools are publicly ***,the number of steps for creating a novel Assembly Hub is *** some cases,the format of input files needs to be adapted,which is a difficult task for scientists without programming ***,we describe Make Hub,a novel command line tool that generates Assembly Hubs for the UCSC Genome Browser in a fully automated *** pipeline also allows extending previously created Hubs by additional *** Hub is freely available for downloading at https://***/Gaius-Augustus/Make Hub.

关键词： Genome annotation Annotation visualization RNA-seq Genome browser

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Nitric Oxide and Brassinosteroids Mediated Fungal Endophyte-Induced Volatile Oil Production Through Protein Phosphorylation Pathways in Atractylodes lancea Plantlets

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Journal of Integrative Plant Biology 2013年第11期55卷 1136-1146页

作者： Cheng-Gang Ren Chuan-Chao Dai Jiangsu Key Laboratory for microbes and Functional Genomics Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources College of Life Sciences in Nanjing Normal University

Fungal endophytes have been isolated from almost every plant, infecting their hosts without causing visible disease symptoms, and yet have still proved to be involved in plant secondary metabolites accumulation. To decipher the possible physiological mechanisms of the endophytic fungus-host interaction, the role of protein phosphorylation and the relationship between endophytic fungus-induced kinase activity and nitric oxide （NO） and brassinolide （BL） in endophyte-enhanced volatile oil accumulation in Atractylodes lancea plantlets were investigated using pharmacological and biochemical approaches. Inoculation with the endophytic fungus Gilmaniella sp. ALl2 enhanced the activities of total protein phosphorylation, Ca2^-dependent protein kinase, and volatile oil accumulation in A. lancea plantlets. The upregulation of protein kinase activity could be blocked by the BL inhibitor brassinazole. Furthermore, pretreatments with the NO-specific scavenger cPTIO significantly reduced the increased activities of protein kinases in A. lancea plantlets inoculated with endophytic fungus. Pretreatments with different protein kinase inhibitors also reduced fungus-induced NO production and volatile oil accumulation, but had barely no effect on the BL level. These data suggest that protein phosphorylation is required for endophyte- induced volatile oil production in A. lancea plantlets, and that crosstalk between protein phosphorylation and the NO pathway may occur and act as a downstream signaling event of the BL pathway.

关键词： Atractylodes lancea endophytic fungus protein phosphorylation signal molecule volatile oi1.

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Prochlorococcus viruses—From biodiversity to biogeochemical cycles

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Science China Earth Sciences 2018年第12期61卷 1728-1736页

作者： Xilin XIAO Qinglu ZENG Rui ZHANG Nianzhi JIAO State Key Laboratory of Marine Environmental Science College of Ocean & Earth Sciences Institute of Marine Microbes and EcospheresXiamen University Department of Ocean Science and Division of Life Science Hong Kong University of Science and Technology

As the dominant primary producer in oligotrophic oceans, the unicellular picocyanobacterium Prochlorococcus is the smallest and most abundant photosynthetic phytoplankton in the world and plays an important role in marine carbon *** that infect Prochlorococcus influence the growth, carbon fixation, diversity, evolution, and environmental adaptation of their hosts. Here, we review studies on the isolation, genomics, and phylogenetic diversity of Prochlorococcus viruses and their interactions with Prochlorococcus. We also review the potential effects of Prochlorococcus viruses on biogeochemical cycling in the ocean.

关键词： Prochlorococcus viruses Diversity Genomics Biogeochemical significance

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Nitrate assimilation by marine heterotrophic bacteria

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Science China Earth Sciences 2016年第2期59卷 477-483页

作者： JIANG Xue Xia JIAO Nian Zhi State Key Laboratory of Marine Environmental Science Xiamen University Institute of Marine microbes and Ecospheres Xiamen University

Nitrate assimilation is a process where bacteria utilize nitrate as a nitrogen source and synthesize it into organic nitrogen. We found that nitrate-assimilating bacteria(NAB) are widely distributed in various marine environments, from surface to the deep ocean and sediment, which indicates that NAB are significant to the oceanic nitrogen cycle. Comparative genomic analysis revealed nitrate-assimilating genes(nas A) in these marine heterotrophic NAB showed different gene arrangements and diverse regulation systems. Summary on recent findings will contribute to understanding the process of nitrate assimilation in NAB and their ecological significance in the nitrogen cycle. A systematic analysis of a number of studies on bacterial nitrate assimilation in marine ecological systems was conducted to clarify directions for future research.

关键词： Nitrate assimilation Assimilatory nitrate reductase gene nas A Heterotrophic bacteria Marine molecular ecology

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