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Learning to select the recombination operator for derivative-free optimization

science China Mathematics 2024年第6期67卷 1457-1480页

作者： Haotian Zhang Jianyong Sun Thomas Back Zongben Xu School of Mathematics and Statistics Xi’an Jiaotong UniversityXi’an710049China leiden institute of Advanced computer science Leiden UniversityLeiden2333 CANetherlands

Extensive studies on selecting recombination operators adaptively,namely,adaptive operator selection(AOS),during the search process of an evolutionary algorithm(EA),have shown that AOS is promising for improving EA's performance.A variety of heuristic mechanisms for AOS have been proposed in recent decades,which usually contain two main components:the feature extraction and the policy *** feature extraction refers to as extracting relevant features from the information collected during the search *** policy setting means to set a strategy(or policy)on how to select an operator from a pool of operators based on the extracted *** components are designed by hand in existing studies,which may not be efficient for adapting optimization *** this paper,a generalized framework is proposed for learning the components of AOS for one of the main streams of EAs,namely,differential evolution(DE).In the framework,the feature extraction is parameterized as a deep neural network(DNN),while a Dirichlet distribution is considered to be the policy.A reinforcement learning method,named policy gradient,is used to train the *** case studies,the proposed framework is applied to two DEs including the classic DE and a recently-proposed DE,which result in two new algorithms named PG-DE and PG-MPEDE,*** on the Congress of Evolutionary Computation(CEC)2018 test suite show that the proposed new algorithms perform significantly better than their ***,we prove theoretically that the considered classic methods are the special cases of the proposed framework.

关键词： evolutionary algorithm differential evolution adaptive operator selection reinforcement learning deep learning

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Fast Cross-Platform Binary Code Similarity Detection Framework Based on CFGs Taking Advantage of NLP and Inductive GNN

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Chinese Journal of Electronics 2024年第1期33卷 128-138页

作者： Jinxue PENG Yong WANG Jingfeng XUE Zhenyan LIU School of computer science and Technology Beijing Institute of Technology

Cross-platform binary code similarity detection aims at detecting whether two or more pieces of binary code are similar or not. Existing approaches that combine control flow graphs(CFGs)-based function representation and graph convolutional network(GCN)-based similarity analysis are the best-performing ones. Due to a large amount of convolutional computation and the loss of structural information, the use of convolution networks will inevitably bring problems such as high overhead and sometimes inaccuracy. To address these issues, we propose a fast cross-platform binary code similarity detection framework that takes advantage of natural language processing(NLP)and inductive graph neural network(GNN) for basic blocks embedding and function representation respectively by simulating extracting structural features and temporal features. GNN’s node-centric and small batch is a suitable training way for large CFGs, it can greatly reduce computational overhead. Various NLP basic block embedding models and GNNs are evaluated. Experimental results show that the scheme with long short term memory(LSTM)for basic blocks embedding and inductive learning-based Graph SAGE(GAE) for function representation outperforms the state-of-the-art works. In our framework, we can take only 45% overhead. Improve efficiency significantly with a small performance trade-off.

关键词： Training Semantics Process control Binary codes Feature extraction Natural language processing Graph neural networks

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Deep Guided Attention Network for Joint Denoising and Demosaicing in Real Image

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Chinese Journal of Electronics 2024年第1期33卷 303-312页

作者： Tao ZHANG Ying FU Jun ZHANG School of computer science and Technology Beijing Institute of Technology Advanced Reasearch institute of Multidisciplinary science Beijing Institute of Technology

Denoising(DN) and demosaicing(DM) are the first crucial stages in the image signal processing pipeline. Recently, researches pay more attention to solve DN and DM in a joint manner, which is an extremely undetermined inverse problem. Existing deep learning methods learn the desired prior on synthetic dataset, which limits the generalization of learned network to the real world data. Moreover, existing methods mainly focus on the raw data property of high green information sampling rate for DM, but occasionally exploit the high intensity and signalto-noise(SNR) of green channel. In this work, a deep guided attention network(DGAN) is presented for real image joint DN and DM(JDD), which considers both high SNR and high sampling rate of green information for DN and DM, respectively. To ease the training and fully exploit the data property of green channel, we first train DN and DM sub-networks sequentially and then learn them jointly, which can alleviate the error accumulation. Besides, in order to support the real image JDD, we collect paired raw clean RGB and noisy mosaic images to conduct a realistic dataset. The experimental results on real JDD dataset show the presented approach performs better than the state-of-the-art methods, in terms of both quantitative metrics and qualitative visualization.

关键词： Training Visualization Inverse problems Green products Noise reduction Pipelines Signal processing

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An Encoding-Decoding Framework Based on CNN for circ RNA-RBP Binding Sites Prediction

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Chinese Journal of Electronics 2024年第1期33卷 256-263页

作者： Yajing GUO Xiujuan LEI Yi PAN School of computer science Shaanxi Normal University Faculty of computer science and Control Engineering Shenzhen Institute of Advanced TechnologyChinese Academy of Sciences Department of computer science Georgia State University

Predicting RNA binding protein(RBP) binding sites on circular RNAs(circ RNAs) is a fundamental step to understand their interaction mechanism. Numerous computational methods are developed to solve this problem, but they cannot fully learn the features. Therefore, we propose circ-CNNED, a convolutional neural network(CNN)-based encoding and decoding framework. We first adopt two encoding methods to obtain two original matrices. We preprocess them using CNN before fusion. To capture the feature dependencies, we utilize temporal convolutional network(TCN) and CNN to construct encoding and decoding blocks, respectively. Then we introduce global expectation pooling to learn latent information and enhance the robustness of circ-CNNED. We perform circ-CNNED across 37 datasets to evaluate its effect. The comparison and ablation experiments demonstrate that our method is superior. In addition, motif enrichment analysis on four datasets helps us to explore the reason for performance improvement of circ-CNNED.

关键词： Proteins RNA Neural networks Encoding Robustness Decoding Convolutional neural networks

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Hybrid concurrency control protocol for data sharing among heterogeneous blockchains

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Frontiers of computer science 2024年第3期18卷 1-12页

作者： Tiezheng GUO Zhiwei ZHANG Ye YUAN Xiaochun YANG Guoren WANG School of computer science and Technology Beijing Institute of TechnologyBeijing 100029China School of computer science and Engineering Northeastern UniversityShenyang 110167China

With the development of information technology and cloud computing,data sharing has become an important part of scientific *** traditional data sharing,data is stored on a third-party storage platform,which causes the owner to lose control of the *** a result,there are issues of intentional data leakage and tampering by third parties,and the private information contained in the data may lead to more significant ***,data is frequently maintained on multiple storage platforms,posing significant hurdles in terms of enlisting multiple parties to engage in data sharing while maintaining *** this work,we propose a new architecture for applying blockchains to data sharing and achieve efficient and reliable data sharing among heterogeneous *** design a new data sharing transaction mechanism based on the system architecture to protect the security of the raw data and the processing *** also design and implement a hybrid concurrency control protocol to overcome issues caused by the large differences in blockchain performance in our system and to improve the success rate of data sharing *** took Ethereum and Hyperledger Fabric as examples to conduct crossblockchain data sharing *** results show that our system achieves data sharing across heterogeneous blockchains with reasonable performance and has high scalability.

关键词： data sharing blockchain concurrency control protocol crosschain

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Memory-enhanced text style transfer with dynamic style learning and calibration

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science China(Information sciences) 2024年第4期67卷 181-196页

作者： Fuqiang LIN Yiping SONG Zhiliang TIAN Wangqun CHEN Diwen DONG Bo LIU College of computer science and Technology National University of Defense Technology Department of computer science and Engineering The Hong Kong University of Science and Technology Strategic Assessments and Consultation institute Academy of Military Sciences

Text style transfer aims to rephrase a sentence to match the desired style while retaining the original content. As a controllable text generation task, mainstream approaches use content-independent style embedding as control variables to guide stylistic generation. Nonetheless, stylistic properties are contextsensitive even under the same style. For example, “delicious” and “helpful” convey positive sentiments,although they are more likely to describe food and people, respectively. Therefore, desired style signals must vary with the content. To this end, we propose a memory-enhanced transfer method, which learns fine-grained style representation concerning content to assist transfer. Rather than employing static style embedding or latent variables, our method abstracts linguistic characteristics from training corpora and memorizes subdivided content with the corresponding style representations. The style signal is dynamically retrieved from memory using the content as a query, providing a more expressive and flexible latent style space. To address the imbalance between quantity and quality in different content, we further introduce a calibration method to augment memory construction by modeling the relationship between candidate *** results obtained using three benchmark datasets confirm the superior performance of our model compared to competitive approaches. The evaluation metrics and case study also indicate that our model can generate diverse stylistic phrases matching context.

关键词： style transfer memory-enhanced method text generation deep learning text representation

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Drug-Target Interactions Prediction Based on Signed Heterogeneous Graph Neural Networks

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Chinese Journal of Electronics 2024年第1期33卷 231-244页

作者： Ming CHEN Yajian JIANG Xiujuan LEI Yi PAN Chunyan JI Wei JIANG College of Information science and Engineering Hunan Normal University School of computer science Shaanxi Normal University Faculty of computer science and Control Engineering Shenzhen Institute of Advanced TechnologyChinese Academy of Sciences computer science Department BNU-HKBU United International College

Drug-target interactions(DTIs) prediction plays an important role in the process of drug *** computational methods treat it as a binary prediction problem, determining whether there are connections between drugs and targets while ignoring relational types information. Considering the positive or negative effects of DTIs will facilitate the study on comprehensive mechanisms of multiple drugs on a common target, in this work, we model DTIs on signed heterogeneous networks, through categorizing interaction patterns of DTIs and additionally extracting interactions within drug pairs and target protein pairs. We propose signed heterogeneous graph neural networks(SHGNNs), further put forward an end-to-end framework for signed DTIs prediction, called SHGNN-DTI,which not only adapts to signed bipartite networks, but also could naturally incorporate auxiliary information from drug-drug interactions(DDIs) and protein-protein interactions(PPIs). For the framework, we solve the message passing and aggregation problem on signed DTI networks, and consider different training modes on the whole networks consisting of DTIs, DDIs and PPIs. Experiments are conducted on two datasets extracted from Drug Bank and related databases, under different settings of initial inputs, embedding dimensions and training modes. The prediction results show excellent performance in terms of metric indicators, and the feasibility is further verified by the case study with two drugs on breast cancer.

关键词： Drugs Training Proteins Measurement Message passing Prediction methods Graph neural networks

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A Study on the Explainability of Thyroid Cancer Prediction:SHAP Values and Association-Rule Based Feature Integration Framework

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computers, Materials & Continua 2024年第5期79卷 3111-3138页

作者： Sujithra Sankar S.Sathyalakshmi Department of computer Applications Hindustan Institute of Technology and ScienceChennaiTamil NaduIndia Department of computer Engineering Hindustan Institute of Technology and ScienceChennaiTamil NaduIndia

In the era of advanced machine learning techniques,the development of accurate predictive models for complex medical conditions,such as thyroid cancer,has shown remarkable *** predictivemodels for thyroid cancer enhance early detection,improve resource allocation,and reduce ***,the widespread adoption of these models in clinical practice demands predictive performance along with interpretability and *** paper proposes a novel association-rule based feature-integratedmachine learning model which shows better classification and prediction accuracy than present *** study also focuses on the application of SHapley Additive exPlanations(SHAP)values as a powerful tool for explaining thyroid cancer prediction *** the proposed method,the association-rule based feature integration framework identifies frequently occurring attribute combinations in the *** original dataset is used in trainingmachine learning models,and further used in generating SHAP values *** the next phase,the dataset is integrated with the dominant feature sets identified through association-rule based *** new integrated dataset is used in re-training the machine learning *** new SHAP values generated from these models help in validating the contributions of feature sets in predicting *** conventional machine learning models lack interpretability,which can hinder their integration into clinical decision-making *** this study,the SHAP values are introduced along with association-rule based feature integration as a comprehensive framework for understanding the contributions of feature sets inmodelling the *** study discusses the importance of reliable predictive models for early diagnosis of thyroid cancer,and a validation framework of *** proposed model shows an accuracy of 93.48%.Performance metrics such as precision,recall,F1-score,and the area un

关键词： Explainable AI machine learning clinical decision support systems thyroid cancer association-rule based framework SHAP values classification and prediction

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Quantum speedup and limitations on matroid property problems

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Frontiers of computer science 2024年第4期18卷 189-196页

作者： Xiaowei HUANG Jingquan LUO Lvzhou LI institute of Quantum Computing and computer Theory School of Computer Science and EngineeringSun Yat-sen UniversityGuangzhou 510006China

Matroid theory has been developed to be a mature branch of mathematics and has extensive applications in combinatorial optimization,algorithm design and so *** the other hand,quantum computing has attracted much attention and has been shown to surpass classical computing on solving some computational ***,crossover studies of the two fields seem to be missing in the *** paper initiates the study of quantum algorithms for matroid property *** is shown that quadratic quantum speedup is possible for the calculation problem of finding the girth or the number of circuits(bases,flats,hyperplanes)of a matroid,and for the decision problem of deciding whether a matroid is uniform or Eulerian,by giving a uniform lower boundΩ■on the query complexity of all these *** the other hand,for the uniform matroid decision problem,an asymptotically optimal quantum algorithm is proposed which achieves the lower bound,and for the girth problem,an almost optimal quantum algorithm is given with query complexityO■.In addition,for the paving matroid decision problem,a lower boundΩ■on the query complexity is obtained,and an O■ quantum algorithm is presented.

关键词： quantum computing matroid quantum algorithm quantum query complexity

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DNACDS:Cloud IoE big data security and accessing scheme based on DNA cryptography

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Frontiers of computer science 2024年第1期18卷 157-170页

作者： Ashish SINGH Abhinav KUMAR Suyel NAMASUDRA School of computer Engineering KIIT Deemed to be UniversityBhubaneshwar 751024India Department of computer science and Engineering Indian Institute of Information Technology SuratSurat 394190India Department of computer science and Engineering National Institute of Technology AgartalaAgartala 799046India

The Internet of Everything(IoE)based cloud computing is one of the most prominent areas in the digital big data *** approach allows efficient infrastructure to store and access big real-time data and smart IoE services from the *** IoE-based cloud computing services are located at remote locations without the control of the data *** data owners mostly depend on the untrusted Cloud Service Provider(CSP)and do not know the implemented security *** lack of knowledge about security capabilities and control over data raises several security *** Acid(DNA)computing is a biological concept that can improve the security of IoE big *** IoE big data security scheme consists of the Station-to-Station Key Agreement Protocol(StS KAP)and Feistel cipher *** paper proposed a DNA-based cryptographic scheme and access control model(DNACDS)to solve IoE big data security and access *** experimental results illustrated that DNACDS performs better than other DNA-based security *** theoretical security analysis of the DNACDS shows better resistance capabilities.

关键词： IoE based cloud computing DNA cryptography IoE big data security StS KAP feistel cipher IoE big data access

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