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Taxonomy and phylogeny of the section Chaetoceros(Chaetocerotaceae,Bacillariophyta),with description of two new species

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Journal of Oceanology and Limnology 2024年第4期42卷 1286-1311页

作者： Xudan LU Mengyi ZHAI Nina LUNDHOLM Yang LI Guangdong Provincial Key laboratory of Biotechnology for Plant Development Guangzhou Key Laboratory of Subtropical Biodiversity and BiomonitoringCollege of Life ScienceSouth China Normal UniversityGuangzhou 510631China natural History Museum of Denmark University of CopenhagenCopenhagen K 1353Denmark

Chaetoceros Ehrenberg is one of the most diverse genera of planktonic *** species in section Chaetoceros are characterized by cells and setae having numerous chloroplasts and being widely ***,the delimitations of some species are problematic because of limited morphological information in the classical *** strains of the section Chaetoceros were established,morphological features were studied using light and electron microscopy,and the hypervariable D 1-D 3 region of the nuclear ribosomal large subunit gene was sequenced to address phylogenetic *** species belonging to the section Chaetoceros were recorded,including two new species,*** *** *** *** hainanensis was characterized by straight chains,narrowly lanceolate to hexagonal apertures,sibling setae diverging in nearly right angles,stipule-shaped spines on terminal setae and arrowhead-shaped spines on intercalary *** had short straight chains,narrowly lanceolate apertures,arrowhead-shaped spines and circular poroids arranged in a grid pattern on terminal and intercalary *** phylogenetic analyses revealed six groups formed by 19 species within the section Chaetoceros,which was found to be *** subdivision of the section is still not well *** morphological characters within each group varied considerably and molecular information on more species are needed to enrich the phylogenetic profiling.

关键词： morphology large subunit ribosomal RNA encoding gene(LSU) section Chaetoceros Chaetoceros hainanensis Chaetoceros tridiscus

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From germline genome to highly fragmented somatic genome:genome-wide DNA rearrangement during the sexual process in ciliated protists

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Marine Life Science & Technology 2024年第1期6卷 31-49页

作者： Liping Lyu Xue Zhang Yunyi Gao Tengteng Zhang Jinyu Fu Naomi A.Stover Feng Gao Key laboratory of Evolution&Marine biodiversity(Ministry of Education) and Institute of Evolution&Marine BiodiversityOcean University of ChinaQingdao 266003China Department of Biology Bradley UniversityPeoriaIL 61625USA Laoshan laboratory Qingdao 266237China

Genomes are incredibly dynamic within diverse eukaryotes and programmed genome rearrangements(PGR)play important roles in generating genomic ***,genomes and chromosomes in metazoans are usually large in size which prevents our understanding of the origin and evolution of *** expand our knowledge of genomic diversity and the evolutionary origin of complex genome rearrangements,we focus on ciliated protists(ciliates).Ciliates are single-celled eukaryotes with highly fragmented somatic chromosomes and massively scrambled germline *** in ciliates occurs extensively by removing massive amounts of repetitive and selfish DNA elements found in the silent germline genome dur-ing development of the somatic *** report the partial germline genomes of two spirotrich ciliate species,namely Strombidium *** and Halteria grandinella,along with the most compact and highly fragmented somatic genome for *** provide the first insights into the genome rearrangements of these two species and compare these features with those of other *** analyses reveal:(1)DNA sequence loss through evolution and during PGR in *** has combined to produce the most compact and efficient nanochromosomes observed to date;(2)the compact,transcriptome-like somatic genome in both species results from extensive removal of a relatively large number of shorter germline-specific DNA sequences;(3)long chromosome breakage site motifs are duplicated and retained in the somatic genome,revealing a complex model of chromosome fragmentation in spirotrichs;(4)gene scrambling and alternative pro-cessing are found throughout the core spirotrichs,offering unique opportunities to increase genetic diversity and regulation in this group.

关键词： Alternative processing Ciliates Gene scrambling Genome rearrangement Germline genome Somatic genome

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Population genomic data reveal low genetic diversity,divergence and local adaptation among threatened Reeves's Pheasant(Syrmaticus reevesii)

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Avian Research 2024年第1期15卷 1-11页

作者： Qi Lu Pengcheng Wang Jiang Chang De Chen Shenghan Gao Jacob Hoglund Zhengwang Zhang Ministry of Education Key laboratory for biodiversity Science and Ecological Engineering College of Life SciencesBeijing Normal UniversityBeijing100875China Jiangsu Key laboratory for biodiversity and Biotechnology College of Life SciencesNanjing Normal UniversityNanjing210023China State Key laboratory of Environmental Criteria and Risk Assessment Chinese Research Academy of Environmental SciencesBeijing100012China State Key laboratory of Microbial resources Institute of MicrobiologyChinese Academy of SciencesBeijing100101China Department of Ecology and Genetics Animal EcologyUppsala UniversityUppsalaSweden

Population genomic data could provide valuable information for conservation efforts;however,limited studies have been conducted to investigate the genetic status of threatened ***’s Pheasant(Syrmaticus reevesii)is facing population decline,attributed to increases in habitat *** is a knowledge gap in understanding the genomic status and genetic basis underlying the local adaptation of this threatened ***,we used population genomic data to assess population structure,genetic diversity,inbreeding patterns,and genetic ***,we identified candidate genes linked with adaptation across the current distribution of Reeves’s *** present study assembled the first de novo genome sequence of Reeves’s Pheasant and annotated 19,458 *** also sequenced 30 individuals from three populations(Dabie Mountain,Shennongjia,Qinling Mountain)and found that there was clear population structure among those *** comparing with other threatened species,we found that Reeves’s Pheasants have low genetic *** of homozygosity suggest that the Shennongjia population has experienced serious *** demographic history results indicated that three populations experienced several declines during the glacial *** adaptative analysis among the populations identified 241 candidate genes under directional *** are involved in a large variety of processes,including the immune response and *** results suggest that the three populations should be considered as three different conservation *** current study provides genetic evidence for conserving the threatened Reeves’s Pheasant and provides genomic resources for global biodiversity management.

关键词： Conservation genetics Local adaptation Pheasant Whole-genome sequencing

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A new infrageneric classification of Gastrochilus(Orchidaceae:Epidendroideae)based on molecular and morphological data

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Plant Diversity 2024年第4期46卷 435-447页

作者： Jun-Yi Zhang Yue-Hong Cheng Min Liao Yu Feng Sen-Long Jin Ting-Mei He Hai He Bo Xu China-Croatia“Belt and Road”Joint laboratory on biodiversity and Ecosystem Services CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization&Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan ProvinceChengdu Institute of BiologyChinese Academy of SciencesP.O.Box 416Chengdu 610041SichuanChina College of Life Sciences Chongqing Normal UniversityChongqing 401331China Wolong National natural Reserve Administration Bureau Wenchuan 623006SichuanChina University of Chinese Academy of Sciences Beijing 100049China

Gastrochilus is an orchid genus containing 73 species of mainly epiphytic on trees or rocks in mountain forests of tropical and subtropical *** phylogenetic analyses and morphological assessments have failed to produce a well-resolved phylogeny at the infrageneric *** the present study,a new infrageneric classification of Gastrochilus is proposed based on thoroughly morphological and phylogenetic analyses based on 52 *** phylogenetic analysis divided the genus into six sections including three new sections,***,*** and *** also reinstate *** to the specific ***,two new species,*** Jun ***,***&Yue *** and *** Jun ***,***&Yue ***,are described and illustrated.A key to six sections of the genus is presented.

关键词： Gastrochilus Phylogeny Character evolution Taxonomy New species

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Sounding the alarm:Functionally referential signaling in Azure-winged Magpie

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Avian Research 2024年第1期15卷 35-41页

作者： Xingyi Jiang Yanyun Zhang Ministry of Education Key laboratory for biodiversity and Ecological Engineering College of Life SciencesBeijing Normal UniversityBeijing 100875China

Functionally referential signals are a complex form of communication that conveys information about the external *** signals have been found in a range of mammal and bird species and have helped us understand the complexities of animal *** are well known for their extraordinary cognitive abilities,but relatively little attention has been paid to their vocal ***,we investigated the functionally referential signals of a cooperatively breeding corvid species,Azure-winged Magpie(Cyanopica cyanus).Through field observations,we suggest that Azure-winged Magpie uses referential alarm calls to distinguish two types of threats:’rasp’ calls for terrestrial threats and ’chatter’ calls for aerial threats.A playback experiment revealed that Azure-winged Magpies responded to the two call types with qualitatively different *** sought cover by flying into the bushes in response to the ’chatter’ calls,and flew to or stayed at higher positions in response to ’rasp’ calls,displaying a shorter response time to ’chatter’ *** differences in acoustic structure were found between the two types of *** the extensive cognitive abilities of corvids and the fact that referential signals were once thought to be unique to primates,these findings are important for expanding our understanding of social communication and language evolution.

关键词： Alarm call Animal communication Azure-winged Magpie Referential signal

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Integrating phosphorus management and cropping technology for sustainable maize production

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Journal of Integrative Agriculture 2024年第4期23卷 1369-1380页

作者： Haiqing Gong Yue Xiang Jiechen Wu Laichao Luo Xiaohui Chen Xiaoqiang Jiao Chen Chen State Key laboratory of Nutrient Use and Management College of Resources and Environmental SciencesCollege of Resources and Environmental SciencesChina Agricultural UniversityBeijing 100193China Department of Sustainable Development Environmental Science and Engineering(SEED)KTH Royal Institute of TechnologyStockholm SE-10044Sweden Anhui Province Key Lab of Farmland Ecological Conservation and Pollution Prevention School of Resources and EnvironmentAnhui Agricultural UniversityHefei 230036China Ministry of Education Key laboratory for biodiversity Science and Ecological Engineering National Observations and Research Station for Wetland Ecosystems of the Yangtze EstuaryInstitute of Biodiversity Science and Institute of Eco-ChongmingCollege of Life SciencesFudan UniversityShanghai 200438China

Achieving high maize yields and efficient phosphorus(P)use with limited environmental impacts is one of the greatest challenges in sustainable maize *** plant density is considered an effective approach for achieving high maize ***,the low mobility of P in soils and the scarcity of natural P resources have hindered the development of methods that can simultaneously optimize P use and mitigate the P-related environmental footprint at high plant *** this study,meta-analysis and substance flow analysis were conducted to evaluate the effects of different types of mineral P fertilizer on maize yield at varying plant densities and assess the flow of P from rock phosphate mining to P fertilizer use for maize production in China.A significantly higher yield was obtained at higher plant densities than at lower plant *** application of single superphosphate,triple super-phosphate,and calcium magnesium phosphate at high plant densities resulted in higher yields and a smaller environmental footprint than the application of diammonium phosphate and monoammonium *** scenario analyses suggest that combining the optimal P type and application rate with a high plant density could increase maize yield by 22%.Further,the P resource use efficiency throughout the P supply chain increased by 39%,whereas the P-related environmental footprint decreased by 33%.Thus,simultaneously optimizing the P type and application rate at high plant densities achieved multiple objectives during maize production,indicating that combining P management with cropping techniques is a practical approach to sustainable maize *** findings offer strategic,synergistic options for achieving sustainable agricultural development.

关键词： maize plant density mineral phosphorus fertilizer meta-analysis substance flow analysis

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Linkages among leaf nutrient concentration,resorption efficiency, litter decomposition and their stoichiometry to canopy nitrogen addition and understory removal in subtropical plantation

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Ecological Processes 2024年第02期13卷 90-102页

作者： Jawad Ali Shah Wenfei Liu Saif Ullah Honglang Duan Fangfang Shen Yingchun Liao Guomin Huang Jianping Wu Ministry of Education Key laboratory for Transboundary Ecosecurity of Southwest China Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology and Institute of Biodiversity School of Ecology and Environmental Science Yunnan University laboratory of Soil Ecology and Health in Universities of Yunnan Province Yunnan University Jiangxi Key laboratory for Restoration of Degraded Ecosystems & Watershed Ecohydrology Nanchang Institute of Technology Key laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province Institute for Forest Resources and Environment of Guizhou College of ForestryGuizhou University

Background The prevalence of understory removal and anthropogenic nitrogen(N) deposition has significantly altered the ecological processes of forest ecosystems at both regional and global scales. However, it remains a pressing challenge to understand how N deposition and understory removal affect leaf nutrient dynamics, nutrient resorption, litter decomposition, and their linkages for better managing forest ecosystems under nutrient imbalances induced by N enrichment. To address this research gap, a field manipulation experiment was carried out in a subtropical Cunninghamia lanceolata plantation with four treatments including: control(CK), canopy N addition(CN), understory removal(UR), and canopy N addition plus understory removal(CN × UR). Green and senesced leaf N and phosphorus(P) concentrations, N and P resorption efficiencies, litter decomposition, and their correlations were *** The results revealed that the average N concentrations of green early and late leaves in UR were increased by 6.61 and 18.89% compared to CK. UR had the highest whereas CN had the lowest P concentrations in green leaves across the two sampling seasons. Following this, UR, leaf type, season, and their interactions significantly affected leaf N, P, and N:P(P < 0.05). The highest leaf N resorption(32.68%) and P resorption efficiencies(63.96%) were recorded in UR. Litter decomposition was significantly retarded in UR(P < 0.01) relative to CN. The regression analysis demonstrated that leaf nutrient status was significantly interconnected with leaf nutrient resorption efficiencies. In addition, leaf nutrient dynamics were strongly correlated with litter nutrients, indicating that both were *** These findings can deepen our knowledge of biogeochemical cycling and reveal contrasting nutrientacquisition strategies on N and P limitation in response to UR and CN. Considering the P limitation, it is important to note that P was resorbed more efficiently, illustrating a

关键词： Nutrient resorption Nitrogen deposition Litter decomposition Stoichiometry Understory removal Subtropical plantation

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Integrating host biological and ecological variables to predict probability of haemosporidian infection in raptors

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Avian Research 2024年第2期15卷 255-264页

作者： Kai Gao Xuemei Yang Xi Huang Wenhong Deng Ministry of Education Key laboratory for biodiversity Science and Ecological Engineering College of Life SciencesBeijing Normal UniversityBeijing100875China

Variations in host traits that influence their exposure and susceptibility may impact probability of vector-transmitted ***,identifying the predictors of infection probability is necessary to understand the risk of disease outbreaks during expanding environmental ***,we conducted a large survey based on microscopic examination and molecular analysis of haemosporidian parasite infection in raptors rescued at the Beijing Raptor Rescue *** these data with biological and ecological variables of the raptors,we determined predictors that affect the probability of haemosporidian infection using generalized linear mixed models and multimodel *** results showed that infection probability exhibited considerable variation across host species in raptors,and body mass,sex,and evolutionary history played relatively weaker roles in driving infection ***,activity pattern,age,geographic range size,migration distance,and nest type were important predictors of the probability of haemosporidian infection,and the role of each predictor differed in the three main haemosporidian genera(Plasmodium,Haemoproteus,and Leucocytozoon).This macro-ecological analysis will add to our understanding of host traits that influence the probability of avian haemosporidian infection and will help inform risk of emerging diseases.

关键词： Activity pattern Emerging infectious diseases Infection probability Interspecific variation Migratory exposure

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Improving landscape connectivity through habitat restoration:application for Asian elephant conservation in Xishuangbanna Prefecture,China

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Integrative Zoology 2024年第2期19卷 319-335页

作者： Bin WAN Wenwen LI Peng LIU Nian YANG Shang CHEN Xianming GUO Bin WANG Li ZHANG Key laboratory for biodiversity Science and Ecological Engineering Ministry of EducationCollege of Life SciencesBeijing Normal UniversityBeijingChina Research Center for Coastal Zone Science and Marine Development Strategy First Institute of OceanographyMinistry of Natural ResourcesQingdaoChina School of Biological Sciences The University of Hong KongPokfulamHong KongChina Research Institute of Xishuangbanna National Nature Reserve JinghongChina Xishuangbanna Asian Elephant Conservation and Management Center JinghongChina

Habitat restoration is an effective method for improving landscape connectivity,which can reduce habitat *** landscape connectivity could promote connections between habitat,which is extremely essential to preserve gene flow and population *** study proposes a methodological framework to analyze landscape connectivity for Asian elephant habitat conservation,aiming to provide practical options for reducing habitat fragmentation and improving habitat *** approach involved combining a species distribution model using MaxEnt and landscape functional connectivity models using graph theory to assess the impact on connectivity improvement via farmland/plantation restoration as *** results showed that:(1)there were 119 suitable habitat patches of Asian elephant covering a total area of 1952.41 km^(2).(2)The connectivity between habitats improved significantly after vegetation restoration and the gain first decreased and then increased with the increase of dispersal distance.(3)The first few new habitat patches that were identified played an important role in improving connectivity,and the variation rate of connectivity gradually leveled off as the number of new habitats increased.(4)Prioritization of the 25 best new habitat patches increased connectivity from 0.54%to 5.59%as the dispersal distance increased and mainly was located between two Asian elephant distribution regions and two *** of new habitat patches was effective for improving or restoring *** findings can be used as guidance for improving the studied fragmented Asian elephant habitats,and they can also be used as a reference for the habitat restoration of other endangered species heavily affected by habitat fragmentation.

关键词： Asian elephant connectivity habitat restoration habitat suitability landscape graphs

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Dispersal patterns of Reeves's pheasant based on genetic and behavioral evidence

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Current Zoology 2024年第4期70卷 480-487页

作者： Shuai Lu Xian Hou Shan Tian Zhengxiao Liu Yunqi Wang Ting Jin Jianqiang Li Pengcheng Wang Jiliang Xu School of Ecology and Nature Conservation Beijing Forestry UniversityBeijing 100083China State Key laboratory of Efficient Production of Forest resources Bejing Forestry UniversityBeijing 100083China Jiangsu Key laboratory for biodiversity and Biotechnology College of Life SciencesNanjing Normal UniversityNanjing 210o23China

Dispersal is an important life history trait that plays a crucial role in avoiding *** the dispersal pattern of a threatened species facilitates conservation *** species of Galliformes are forest-dwelling terrestrial birds with a weak dispersal ability and high conservation ***,little is known about the dispersal behavior and dispersal pattern of Galliformes species such as Reeves's pheasant Syrmaticus reevesi,a globally vulnerable species endemic to ***,we integrated behavioral and genetic analyses to inves-tigate the dispersal pattern of Reeves's *** results revealed that both females and males would disperse,although the overall dispersal pattern was more likely to be ***'s pheasant population had a low level of genetic diversity and a mild level of *** low genetic diversity was resulted from fragmented habitat,and male-biased dispersal may reduce the opportunity of *** research indicated that sex-biased dispersal patterns may be a behavioral mechanism adopted by wildlife to avoid inbreeding inafragmented habitat.

关键词： animal behavior dispersal Gallformes genetic diversity satellite tracking.

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