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Field-based evidence for the enrichment of intrinsic antibiotic resistome stimulated by plant-derived fertilizer in agricultural soil

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Journal of Environmental Sciences 2024年第1期135卷 728-740页

作者： Shihai Liu Ziming Han Dong Zhu Xiao Luan Liujie Deng Liping Dong Min Yang Yu Zhang State Key laboratory of Environmental Aquatic Chemistry Research Center for Eco-Environmental SciencesChinese Academy of SciencesBeijing 100085China State Key laboratory of Urban and Regional Ecology Research Center for Eco-Environmental SciencesChinese Academy of SciencesBeijing 100085China State Environmental Protection Engineering Center for Harmless Treatment and Resource Utilization of Antibiotic Residues Khorgos 835007China University of Chinese Academy of Sciences Beijing 100049China

Animal manures have been demonstrated to enhance antibiotic resistance in agricultural ***,little is known about the effects of plant-derived fertilizer on soil antibiotic ***,metagenomic sequencing was used to investigate the effects of a plantderived fertilizer processed from sugarcane and beet on soil antibiotic resistance genes(ARGs)in a soybean field along crop growth *** profiles in the soils amended by plant-derived fertilizer were compared with those in the soils amended by chicken *** abundance and diversity of total ARGs in the soils amended by plant-derived fertilizer were significantly(Pbacterial taxa involved in the temporal variation of the enriched ARGs in the soils amended by plant-derived fertilizer,while in manured soils were Firmicutes and *** revealed by multivariate statistical analyses,variation of the enriched ARGs in the soils amended by plant-derived fertilizer was majorly attributed to the response of co-occurred bacteria to depleting nutrients,which was different from the failed establishment of manure-borne bacteria in the manured *** study provided field-based evidence that plant-derived fertilizer stimulated the intrinsic antibiotic resistome,and proposed attention to the un-perceived risk since some clinically relevant ARGs originate and evolve fr

关键词： Organic fertilizer Intrinsic antibiotic resistance Indigenous bacteria Metagenomic sequencing

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Titanium dioxide E171 consumption exacerbates Listeria monocytogenes infection in mice

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Food Quality and Safety 2024年第1期8卷 68-80页

作者：滕跃王瑷琳赵东云李国鹏刘泷泽邹悦夏效东 State Key laboratory of Marine Food Processing and Safety Control National Engineering Research Center of SeafoodSchool of Food Science and TechnologyDalian Polytechnic UniversityDalianChina

The food additive titanium dioxide is commonly utilized to enhance the appearance and flavor of food ***,this substance has been linked to gastrointestinal *** aim of this study was to investigate the impact of dietary exposure of titanium dioxide E171 on Listeria monocytogenes infection in *** were mainly divided into the control,LM group(*** infection),and E171+LM groups(E171 supplementation before *** infection).Pre-exposure to E171 resulted in increased bacterial counts in the liver,spleen,ileum,colon,mesenteric lymph nodes,and feces of mice after *** ***,E171 exposure increased the levels of pro-inflammatory cytokines while attenuating the levels of anti-inflammatory cytokines in mice infected with ***,mice in the E171+LM group exhibited considerably more severe colonic inflammation and worse intestinal barrier function than mice in the LM *** 16S rRNA gene sequencing revealed a shift in the composition of the gut microbiota of mice in the E171+LM group,characterized by a decrease in the relative abundance of Firmicutes and a decrease in the Firmicutes-to-Bacteroidetes *** levels of acetate,butyrate,and isobutyrate were markedly decreased within the cecum of mice in the E171+LM group in comparison to mice in the LM *** conclusion,these results suggest that E171 exposure could exacerbate *** infection in mice,which may provide useful information for future risk assessment of this commonly used food additive.

关键词： E171 L.monocytogenes intestinal barrier function inflammatory responses gut microbiota.

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Development and performance evaluation of a culture-independent nanopore amplicon-based sequencing method for accurate typing and antimicrobial resistance profiling in Neisseria gonorrhoeae

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Science China(Life Sciences) 2024年第2期67卷 421-423页

作者： Chi Zhang Lulu Zhang Feng Wang Yaling Zeng Liying Sun Di Wang Yamei Li Liqin Wang Junping Peng NHC Key laboratory of Systems Biology of Pathogens Institute of Pathogen BiologyChinese Academy of Medical Sciences&Peking Union Medical CollegeBeijing 100176China Key laboratory of Respiratory Disease Pathogenomics Chinese Academy of Medical SciencesBeijing 100730China Shenzhen Center for Chronic Disease Control Shenzhen 518020China

Dear Editor,bacterial antimicrobial resistance(AMR)poses a serious threat to global human health(Antimicrobial Resistance Collaborators,2022).Comprehensive profiling of AMR and accurate molecular typing are important for tracking and controlling the emergence and dissemination of antibiotic-resistant bacteria(Yahara et al.,2021).We previously developed a multiplex amplicon sequencing-based method for directly sequencing AMR-related loci in *** from clinical samples(Zhang et al.,2021).

关键词： gonorrhoeae resistance

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Single and combined effects of secondary polyethylene microplastic on the growth of Pak choi and the soil microbiome composition

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Frontiers of Environmental Science & Engineering 2024年第5期18卷 1-12页

作者： Jiamin Hu Zhenwen Xie Jiane Zuo State Key Joint laboratory of Environmental Simulation and Pollution Control School of EnvironmentTsinghua UniversityBeijing100084China Tsinghua Shenzhen International Graduate School Tsinghua UniversityShenzhen518055China

It has been confirmed that microplastics(MPs)are present in the *** study simulated secondary PE-MPs via aging and mechanical processes to evaluate their effects on Pak choi(Brassica rapa L.)over 21 *** common pollutants,dichlorodiphenyltrichloroethane(DDT)and naphthalene,were used in the combined toxicity *** results indicated that the growth of Pak choi was significantly inhibited after exposure to secondary PE-MPs,and the combined effects were antagonistic,owing to the adsorption capacity of secondary PE-MPs to DDT and *** stress in Pak choi can be markedly affected,leading to oxidative damage to plant *** moisture content,soil bulk density,soil density,cation exchange capacity(CEC),and FDA hydrolase in the planted soils increased in the treated groups,and the TOC content changed *** also found that the microbial composition of the soil in the DDT and naphthalene groups showed more significant alterations than that in the other *** diversity analysis showed that species diversity increased in the combined groups but indicated a clear downward trend in the single MPs *** study suggests that secondary PE-MPs harm the growth of Pak choi and can change soil properties,revealing the harm to the ecosystem of MPs in the soil.

关键词： Secondary PE-MPs Combined effects Oxidative stress Soil properties bacterial community

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Construction of algal-bacterial consortia using green microalgae Chlorella vulgaris and As(Ⅲ)-oxidizing bacteria:As tolerance and metabolomic profiling

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Journal of Environmental Sciences 2024年第5期139卷 258-266页

作者： Xiaoman He Guobing Lin Jiayuan Zeng Zhaoguang Yang Lin Wang College of Chemistry and Chemical Engineering Central South UniversityChangsha 410083China Key laboratory of Hunan Province for Water Environment and Agriculture Product Safety Central South UniversityChangsha 410083China

Bioremediation became a promising technology to resolve arsenic(As)contamination in aquatic *** monoculture such as microalgae or bacteria was sensitive to environmental disturbance and vulnerable to contamination,green microalgae Chlorella vulgaris and arsenite(As(Ⅲ))-oxidizing bacteria Pseudomonas ***11 were co-cultured to construct algal-bacterial consortia in the current *** effects of algae-bacteria(A:B)ratio and exposure As(Ⅲ)concentration on algal growth,As speciation and metabolomic profile were *** growth arrested when treated with 100 mg/L As(Ⅲ)without the co-cultured *** contrast,co-cultured with strain SMS11 significantly enhanced As tolerance in *** especially with A:B ratio of 1:*** the As(Ⅲ)in culture media of the consortia were oxidized into As(Ⅴ)on day *** of As was observed on day *** 1% and 0.5% of total As were converted into dimethylarsinic acid(DMA)after 21days cultivation when the initial concentrations of As(Ⅲ)were 1 and 10 mg/L,*** analysis was further performed to reveal the response of consortia metabolites to external As(Ⅲ).The enriched metabolomic pathways were associated with carbohydrate,amino acid and energy *** acid cycle and glyoxylate and dicarboxylate metabolism were upregulated under As stress due to their biological functions on alleviating oxidative stress and protecting *** carbohydrate and amino acid metabolisms provided precursors and potential substrates for energy production and cell protection under abiotic *** of the pathways relevant to carbohydrate or amino acid metabolism were triggered by energy requirement.

关键词： Microalgae Algal-bacterial consortia As(Ⅲ)-oxidizing bacteria Metabolomics Energy metabolism

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COVID-19 vaccines and beyond

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Cellular & Molecular Immunology 2024年第3期21卷 207-209页

作者： Yiyuan Liu Danying Li Jiahuai Han State Key laboratory of Cellular Stress Biology Innovation Center for Cell BiologySchool of Life SciencesXiamen UniversityXiamenFujianChina laboratory Animal Center Xiamen UniversityXiamenFujianChina Research Unit of Cellular Stress of CAMS Cancer Research Center of Xiamen UniversityXiang’an Hospital of Xiamen UniversitySchool of MedicineXiamen UniversityXiamenFujianChina

Hundreds of vaccines have been developed worldwide for Severe acute respiratory syndrome coronavirus 2(SARS-CoV-2),the cause of Coronavirus disease 2019(COVID-19),since the beginning of the *** vaccines have saved innumerable lives and contributed to partial control of the COVID-19 *** of the vaccines approved for clinical use exhibit satisfactory initial protection rates against corresponding ***,vaccine protection declines over time,with almost all vaccines falling below 50%protection after 6 months[1].In the case of natural infections,protection lasts longer,but the incidence of reinfection is also quite high.

关键词： vaccines acute beyond

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Self-adjuvant Astragalus polysaccharide-based nanovaccines for enhanced tumor immunotherapy:a novel delivery system candidate for tumor vaccines

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Science China(Life Sciences) 2024年第4期67卷 680-697页

作者： Nan Li Yun Zhang Miaomiao Han Tian Liu Jinjia Wu Yingxia Xiong Yikai Fan Fan Ye Bing Jin Yinghua Zhang Guibo Sun Xiaobo Sun Zhengqi Dong State Key laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs Chinese Academy of Medical Sciences&Peking Union Medical College(CAMS)Institute of Medicinal Plant Development(IMPLAD)Beijing 100193China Key laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine from Ministry of Education Beijing Key Laboratory of Innovative Drug Discovery of Traditional Chinese Medicine(Natural Medicine)and Translational MedicineKey Laboratory of New Drug Discovery Based on Classic Chinese Medicine Prescription from Chinese Academy of Medical SciencesCAMSIMPLADBeijing 100193China Department of Pharmaceutics School of Pharmaceutical SciencesHeilongjiang University of Chinese MedicineHarbin 150036China Jilin Academy of Chinese Medicine Sciences Changchun 130012China Joint Research Center for Chinese Medicinal Herbs IMPLADABRC&ACCLBeijing 100193China

The study of tumor nanovaccines(NVs)has gained interest because they specifically recognize and eliminate tumor ***,the poor recognition and internalization by dendritic cells(DCs)and insufficient immunogenicity restricted the vaccine ***,we extracted two molecular-weight Astragalus polysaccharides(APS,12.19 k D;APSHMw,135.67 k D)from Radix Astragali and made them self-assemble with OVA257–264directly forming OVA/APS integrated nanocomplexes through the microfluidic *** nanocomplexes were wrapped with a sheddable calcium phosphate layer to improve *** in the formed nanocomplexes served as drug carriers and immune adjuvants for potent tumor *** optimal APS-NVs were approximately 160 nm with uniform size distribution and could remain stable in physiological saline *** FITC-OVA in APS-NVs could be effectively taken up by DCs,and APS-NVs could stimulate the maturation of DCs,improving the antigen cross-presentation efficiency in *** possible mechanism was that APS can induce DC activation via multiple receptors such as dectin-1 and Toll-like receptors 2 and *** accumulation of APS-NVs both in draining and distal lymph nodes were observed following *** APS-NVs could easily access the lymph ***,APS-NVs could markedly promote antigen delivery efficiency to DCs and activate cytotoxic T *** addition,APS-NVs achieve a better antitumor effect in established B16-OVA melanoma tumors compared with the OVA+Alum treatment *** antitumor mechanism correlated with the increase in cytotoxic T cells in the tumor ***,the poor tumor inhibitory effect of APS-NVs on the nude mouse model of melanoma also confirmed the participation of antitumor adaptive immune response induced by ***,this study developed a promising APS-based tumor NV that is an efficient tumor immunotherapy without systemic side effects.

关键词： Astragalus polysaccharides nanovaccines OVA immunotherapy self-adjuvant

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Hydrochemistry predominantly shapes the unique nitrogen-fixing bacterial communities in Tibetan hot springs

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Journal of Earth Science 2024年

作者： Zhao-Qi Song Li Wang Yaru Ma Dandan Deng Yang Song Feng Liang Xiangyu Guan Wen-Jun Li Hongchen Jiang School of Ocean Sciences China University of Geosciences Beijing State Key laboratory of Biocontrol Guangdong Key laboratory of Plant Resources School of Life Sciences Sun Yat-sen University Engineering Technology Research Center of Biomass Degradation and Gasification College of Biology and Food Shangqiu Normal University State Key laboratory of Biogeology and Environmental Geology China University of Geosciences

The Tibetan Plateau has a large number of hot springs with varying temperatures and hydrochemistry， high elevation， and limited nitrogenous nutrition. Nitrogen-fixing bacteria (NFB) can fix N2to form ammonia and thus provide bioavailable nitrogen. However， there is limited knowledge about the distribution of NFB and its influencing factors in Tibetan hot springs. Here， we measured hydrochemical variables of the hot springs with a wide temperature range (32–77 ℃) in the Qucai and Daggyai geothermal zones on the Tibetan Plateau and investigated the composition of NFB using high-throughput sequencing of 16S rRNA and nifH genes. The Cl-/SO42-ratio in Qucai hot springs was higher than that in Daggyai， indicating that Qucai and Daggyai hot springs were more affected by the supply of liquid and gaseous phases， respectively. The NFB communities consisted predominantly of Nirtospirae， Chloroflexi， Deltaproteobacteria and an unidentified clade， with the last three acting as the main NFB with over 42% of the communities (the proportions are significantly larger than those found in hot springs of other geothermal regions). This demonstrates the uniqueness of NFB communities in Tibetan hot springs. NFB richness was limited by temperature in the studied Tibetan hot springs and was significantly lower than in low-elevation geothermal regions. The NFB community was predominantly affected by hydrochemistry， in contrast to the entire prokaryotic community， which was primarily influenced by temperature. This study expands our current understanding of NFB distribution and diversity as well as biogeochemical process in geothermal spring environments.

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Ambient particle composition and toxicity in 31 major cities in China

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Fundamental Research 2024年第3期4卷 505-515页

作者： Lu Zhang Maosheng Yao State Key Joint laboratory of Environmental Simulation and Pollution Control College of Environmental Sciences and EngineeringPeking UniversityBeijing 100871China

Current assessment of air quality or control effectiveness is solely based on particulate matter(PM)mass levels,without considering their toxicity differences in terms of health ***,we collected a total of 465 automo-bile air conditioning filters from 31 major Chinese cities to study the composition and toxicity of PM at a national *** assay showed that normalized PM toxicity(NIOG)in different Chinese cities varied greatly from the highest 4.99×10^(-3)for Changsha to the lowest 7.72×10^(-4)for ***0G values were observed to have significant correlations with annual PM_(10) concentration(r=-0.416,p=0.020)and some PM components(total fungi,so.2-and calcium element).The concentrations of different elements and water-soluble ions in PM also varied by several orders of magnitude for 31 cities in *** concentrations in PM analyzed using limulus amebocyte lysate assay ranged from 2.88 EU/mg PM(Hangzhou)to 62.82 EU/mg PM(Shijiazhuang)among 31 Chinese ***,real-time qPCR revealed 10~100-fold differences in total bacterial and fungal levels among 31 Chinese *** concentrations of chemical(water soluble ions and trace elements)and bi-ological(fungi,bacteria and endotoxin)components in PM were found to be significantly correlated with some meteorological factors and gaseous pollutants such as SO_(2).Our results have demonstrated that PM toxicity from 31 major cities varied greatly up to 6.5 times difference;and components such as fungi and SO_(4)^(2-)in PM could play important roles in the observed PM *** city-specific air pollution control strategy that integrates toxicity factors should be enacted in order to maximize health and economic *** work also provides a comprehensive view on the overall PM pollution situation in China.

关键词： PM toxicity Oxidative potential Biologicals Chemical components Endotoxin

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Intensive management enhances mycorrhizal respiration but decreases free-living microbial respiration by affecting microbial abundance and community structure in Moso bamboo forest soils

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Pedosphere 2024年第2期34卷 508-519页

作者： Wenhao JIN Jiangfei GE Shuai SHAO Liyuan PENG Jiajia XING Chenfei LIANG Junhui CHEN Qiufang XU Hua QIN State Key laboratory of Subtropical Silviculture Zhejiang A&F UniversityHangzhou 311300China School of Environmental and Resource Sciences Zhejiang A&F UniversityHangzhou 311300China

Intensive management is known to markedly alter soil carbon(C)storage and turnover in Moso bamboo forests compared with extensive ***,the effects of intensive management on soil respiration(RS)components remain *** study aimed to evaluate the changes in different RScomponents(root,mycorrhizal,and free-living microorganism respiration)in Moso bamboo forests under extensive and intensive management practices.A1-year in-situ microcosm experiment was conducted to quantify the RScomponents in Moso bamboo forests under the two management practices using mesh screens of varying *** results showed that the total RSand its components exhibited similar seasonal variability between the two management *** with extensive management,intensive management significantly increased cumulative respiration from mycorrhizal fungi by 36.73%,while decreased cumulative respiration from free-living soil microorganisms by 8.97%.Moreover,the abundance of arbuscular mycorrhizal fungi(AMF)increased by 43.38%,but bacterial and fungal abundances decreased by 21.65%and 33.30%,respectively,under intensive *** management practices significantly changed the bacterial community composition,which could be mainly explained by soil pH and available *** fungi and intensive management affected the interrelationships between bacterial *** equation modeling indicated that intensive management changed the cumulative RSby elevating AMF abundance and lowering bacterial *** concluded that intensive management reduced the microbial respiration-derived C loss,but increased mycorrhizal respiration-derived C loss.

关键词： arbuscular mycorrhizal fungi extensive management microbial co-occurrence network root respiration soil organic C soil respiration structural equation model

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