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Positive effect of carbohydrate-metabolizing bacteria determines increasing soil organic carbon during long-term fertilization and straw returning in the black soil region of China

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Pedosphere 2024年第5期34卷 853-864页

作者： Yingxin LI Yu SUN Eiko E.KURAMAE Shaoqing ZHANG Enze WANG Zongmu YAO Fahad NASIR Lei TIAN Qiang GAO Chunjie TIAN State Key laboratory of Black Soils Conservation and Utilization Northeast Institute of Geography and Agroecology Chinese Academy of Sciences University of Chinese Academy of Sciences Department of microbial ecology Netherlands Institute of Ecology (NIOO-KNAW) ecology and Biodiversity Group Department of Biology Institute of Environmental Biology Utrecht University Padualaan 8 Jilin Agricultural University Key Lab Soil Resource Sustainable Utilization for Jilin Province Commodity Grain Bases

In the context of global efforts to reduce carbon (C) emissions, several studies have examined the effects of agricultural practices such as straw returning and fertilization on C sequestration by microorganisms. However, our understanding of the specific microbial groups and their roles in long-term C increase remains limited. In this study, a 36-year (1984–2020) farmland experiment was conducted to investigate the impact of bacterial C metabolism on the augmentation of organic C in a Typic Hapludoll (Mollisol) in the black soil region of Jilin Province, Northeast China. Our results demonstrated a noteworthy increase in the diversity of microorganisms in the farmland as a result of long-term straw returning and application of mixed chemical fertilizers. However,by examining the functions of microorganisms involved in C metabolism, it was observed that the effects of fertilization on C metabolism were relatively consistent. This consistency was attributed to a deterministic competitive exclusion process, which minimized the differences between treatment groups. On the other hand, the influence of straw addition on C metabolism appeared to follow a more random pattern. These changes in microbial activity were closely linked to the downregulation of core metabolic pathways related to C metabolism. Notably, long-term fertilization had a negative impact on soil organic C levels, while long-term straw returning plus fertilization resulted in a positive increase in soil organic C. These findings have important implications for enhancing soil organic C and grain yield in the regions with typical black soil.

关键词： community assembly metabolic pathway microbial activity Mollisol soil organic C straw addition

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A study on vector mediator top-philic dark matter

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Communications in Theoretical Physics 2024年第8期76卷 67-78页

作者： Yanyan Hu Yandong Liu Yuanyuan Liu College of Nuclear Science and Technology Beijing Normal UniversityJoint Laboratory of Jinping Ultra-low Radiation Background Measurement of Ministry of Ecology and EnvironmentJinping Deep Underground Frontier Science and Dark Matter Key Laboratory of Sichuan ProvinceKey Laboratory of Beam Technology of Ministry of EducationBeijing 100875China Beijing Radiation Center Beijing 100875China

We conducted a study on a simplified dark matter model that introduces a vector-like intermediate particle,facilitating exclusive interactions between dark matter and the top quark in the Standard *** analysis focused on the relic density of Dirac-type fermion dark matter and highlighted the complementary role of direct detection in constraining the dark matter ***,in instances when dark matter mass is small,the tree-level two-body annihilation process experiences *** such scenarios,the contributions of the threebody process(χχ→tbW-)and the one-loop process(χχ→gg)dominate the relic *** regard to direct detection,calculations were performed for the two-loop contribution to the dark-matter-gluon interaction,yielding the corresponding spin-independent scattering cross section.

关键词： dark matter new physics effective field theory

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Population genomic data reveal low genetic diversity,divergence and local adaptation among threatened Reeves's Pheasant(Syrmaticus reevesii)

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Avian Research 2024年第1期15卷 1-11页

作者： Qi Lu Pengcheng Wang Jiang Chang De Chen Shenghan Gao Jacob Hoglund Zhengwang Zhang Ministry of Education Key laboratory for Biodiversity Science and Ecological Engineering College of Life SciencesBeijing Normal UniversityBeijing100875China Jiangsu Key laboratory for Biodiversity and Biotechnology College of Life SciencesNanjing Normal UniversityNanjing210023China State Key laboratory of Environmental Criteria and Risk Assessment Chinese Research Academy of Environmental SciencesBeijing100012China State Key laboratory of microbial Resources Institute of MicrobiologyChinese Academy of SciencesBeijing100101China Department of ecology and Genetics Animal EcologyUppsala UniversityUppsalaSweden

Population genomic data could provide valuable information for conservation efforts;however,limited studies have been conducted to investigate the genetic status of threatened ***’s Pheasant(Syrmaticus reevesii)is facing population decline,attributed to increases in habitat *** is a knowledge gap in understanding the genomic status and genetic basis underlying the local adaptation of this threatened ***,we used population genomic data to assess population structure,genetic diversity,inbreeding patterns,and genetic ***,we identified candidate genes linked with adaptation across the current distribution of Reeves’s *** present study assembled the first de novo genome sequence of Reeves’s Pheasant and annotated 19,458 *** also sequenced 30 individuals from three populations(Dabie Mountain,Shennongjia,Qinling Mountain)and found that there was clear population structure among those *** comparing with other threatened species,we found that Reeves’s Pheasants have low genetic *** of homozygosity suggest that the Shennongjia population has experienced serious *** demographic history results indicated that three populations experienced several declines during the glacial *** adaptative analysis among the populations identified 241 candidate genes under directional *** are involved in a large variety of processes,including the immune response and *** results suggest that the three populations should be considered as three different conservation *** current study provides genetic evidence for conserving the threatened Reeves’s Pheasant and provides genomic resources for global biodiversity management.

关键词： Conservation genetics Local adaptation Pheasant Whole-genome sequencing

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Ranking environmental and edaphic attributes driving soil microbial community structure and activity with special attention to spatial and temporal scales

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mLife 2024年第1期3卷 21-41页

作者： Vadakattu V.S.R.Gupta James M.Tiedje CSIRO Agriculture&Food UrrbraeSouth AustraliaAustralia Centre for microbial ecology Michigan State UniversityEast LansingMichiganUSA

The incredibly complex soil microbial communities at small scales make their analysis and identification of reasons for the observed structures *** community structure is mainly a result of the inoculum(dispersal),the selective advantages of those organisms under the habitat-based environmental attributes,and the ability of those colonizers to sustain themselves over *** soil is protective,and its microbial inhabitants have long adapted to varied soil conditions,significant portions of the soil microbial community structure are likely ***,a substantial portion of the community will not correlate to often measured soil *** suggest that the drivers be ranked on the basis of their importance to the fundamental needs of the microbes:(i)those that supply energy,i.e.,organic carbon and electron acceptors;(i)environmental effectors or stressors,i.e.,pH,salt,drought,and toxic chemicals;(ii)macro-organism associations,i.e.,plants and their seasonality,animals and their fecal matter,and soil fauna;and(iv)nutrients,in order,N,P,and probably of lesser importance,other micronutrients,and *** relevance of drivers also varies with spatial and time scales,for example,aggregate to field to regional,and persistent to dynamic populations to transcripts,and with the extent of phylogenetic difference,hence phenotypic differences in organismal *** present a summary matrix to provide guidance on which drivers are important for particular studies,with special emphasis on a wide range of spatial and temporal scales,and illustrate this with genomic and population(rRNA gene)data from selected studies.

关键词： abundance community structure diversity functional microbiome microorganisms

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In-situ warming does not change soil priming effect induced by glucose addition in a temperate forest

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Pedosphere 2024年第4期34卷 759-769页

作者： Xiaohan DONG Yunting FANG Dongwei LIU Xin GUAN Kai HUANG Yuqi LIU Qingkui WANG Silong WANG Weidong ZHANG Huitong Experimental Station of Forest ecology CAS Key Laboratory of Forest Ecology and ManagementInstitute of Applied EcologyShenyang 110016China University of Chinese Academy of Sciences Beijing 101408China Hunan Key laboratory for Structure and Ecosystem Service of Subtropical Forest Huitong National Research Station of Forest EcosystemHuitong 418307China Qingyuan Forest Chinese Ecosystem Research Network(CERN) National Observation and Research StationShenyang 110016China Key laboratory of Forest ecology and Management Institute of Applied EcologyChinese Academy of SciencesShenyang 110016(China)f Key Laboratory of Stable Isotope Techniques and ApplicationsShenyang 110016China Key laboratory of Terrestrial Ecosystem Carbon Neutrality Shenyang 110016China

Priming effect(PE)on soil organic carbon(SOC)decomposition caused by the addition of organic carbon(C)is an important ecological process in regulating soil C ***,most priming studies are confined to laboratory trials,while the assessment of soil PE under field conditions with variable weather conditions is *** study assessed the direct effects of glucose addition and in-situ warming on the extent of PE under field conditions in a temperate *** evaluated soil PE using 13C-glucose labelling,a simple and novel technique,based on the Keeling plot *** addition significantly enhanced native SOC decomposition and induced strong ***,the effect of in-situ warming on the extent of PE was not *** study confirms the importance of PE in regulating SOC turnover under field conditions.

关键词： lue lblling tchnquegbal wamingrmingt hppidfaty ai solganmattermineralisatn oezme respiration

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Evaluation of water management on arsenic methylation and volatilization in arsenic-contaminated soils strengthened by bioaugmentation and biostimulation

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Journal of Environmental Sciences 2024年第3期137卷 515-526页

作者： Peng Chen Yi Liu Guo-Xin Sun State Key laboratory of Urban and Regional ecology Research Center for Eco-Environmental SciencesChinese Academy of SciencesBeijing 100085China Key laboratory of Aquatic Botany and Watershed ecology Wuhan Botanical GardenChinese Academy of SciencesWuhan 430074China University of Chinese Academy of Sciences Beijing 100049China

Arsenic(As) fate in paddy fields has been one of the most significant current issues due to the strong As accumulation potential of rice plants under fooded conditions. However,no attempt was done to explore As methylation and volatilization under non-fooded conditions. Herein, we investigated the effects of water management on As methylation and volatilization in three arsenic-contaminated soils enhanced by biostimulation with strawderived organic matter and bioaugmentation with genetic engineered Pseudomonas putida KT2440(GE P. putida). Under fooded conditions, the application of biochar(BC), rice straw(RS)and their combination(BC+RS) increased total As in porewater. However, these effects were greatly attenuated under non-fooded conditions. Compared with RS amendment alone, the combination of GE P. putida and RS further promoted the As methylation and volatilization,and the promotion percentage under non-fooded conditions were significantly higher than that under fooded conditions. The combined GE P. putida and RS showed the highest efficiency in As methylation(88 μg/L) and volatilization(415.4 μg/(kg·year)) in the non-fooded soil with moderate As contamination. Finally, stepwise multiple linear regression analysis presented that methylated As, DOC and p H in porewater were the most important factors contributing to As volatilization. Overall, our findings suggest that combination of bioaugmentation with GE P. putida and biostimulation with RS/BC+RS is a potential strategy for bioremediation of arsenic-contaminated soils by enhancing As methylation and volatilization under non-fooded conditions.

关键词： Arsenic methylation Arsenic volatilization Water management Straw incorporation Bioaugmentation

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Subtropical forest macro-decomposers rapidly transfer litter carbon and nitrogen into soil mineral-associated organic matter

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Forest Ecosystems 2024年第2期11卷 131-139页

作者： Guoxiang Niu Tao Liu Zhen Zhao Xuebing Zhang Huiling Guan Xiaoxiang He Xiankai Lu National Engineering laboratory for Applied Technology of Forestry and ecology in South China Central South University of Forestry and TechnologyChangsha410004China Lushan Botanical Garden Chinese Academy of SciencesJiujiang332900China Key laboratory of Vegetation Restoration and Management of Degraded Ecosystems South China Botanical GardenChinese Academy of SciencesGuangzhou510650China Section of microbial ecology Department of BiologyLund UniversityLund22362Sweden Lutou National Station for Scientific Observation and Research of Forest Ecosystem in Hunan Province Yueyang414000China

Background:Forest soils in tropical and subtropical areas store a significant amount of *** framework to assess soil organic matter(SOM)dynamics under evolving global conditions suggest that dividing bulk SOM into particulate and mineral-associated organic matter(POM ***)is a promising method for identifying how SOM contributes to reducing global *** macrofauna,earthworms,and millipedes have been found to play an important role in facilitating SOM ***,how these two co-existing macrofaunae impac the litter decomposition process and directly impact the formation of POM and MAOM remains ***:Here,we set up a microcosm experiment,which consisted of 20 microcosms with four treatments earthworm and litter addition(E),millipedes and litter addition(M),earthworm,millipedes,and litter addition(E+M),and control(only litter addition)in five *** soil and litter were sterilized prior to beginning the incubation experiment to remove any existing *** incubating the samples for 42 days,the litte properties(mass,C,and N contents),soil physicochemical properties,as well as the C and N contents,and POM and MAOM^(13)C abundance in the 0–5 and 5–10 cm soil layers were ***,the relative influences o soil physicochemical and microbial properties on the distribution of C and N in the soil fractions were analyzed Results:The litter mass,C,and N associated with all four treatments significantly decreased after incubation especially under treatment E+M(litter mass:-58.8%,litter C:-57.0%,litter N:-75.1%,respectively),while earthworm biomass significantly decreased under treatment *** or millipede addition alone showed no significant effects on the organic carbon(OC)and total nitrogen(TN)content in the POM fraction,but join addition of both significantly increased OC and TN regardless of soil ***,all three macrofauna treatments increased the OC and TN content and decreased the^(13)C abundance

关键词： Tropical and subtropical forest Soil organic matter fractions Earthworm Millipedes Litter decomposition

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Greenhouse gas emissions from Daihai Lake,China:Should eutrophication and salinity promote carbon emission dynamics?

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Journal of Environmental Sciences 2024年第1期135卷 407-423页

作者： Xiangwei Li Ruihong Yu Jun Wang Heyang Sun Xinyu Liu Xiaohui Ren Shuai Zhuang Zhiwei Guo Xixi Lu Inner Mongolia Key laboratory of River and Lake ecology School of Ecology and EnvironmentInner Mongolia UniversityHohhot 010070China Key laboratory of Mongolian Plateau ecology and Resource Utilization Ministry of EducationHohhot 010070China Autonomous Region Collaborative Innovation Center for Integrated Management of Water Resources and Water Environment in the Inner Mongolia Reaches of the Yellow River Hohhot 010018China Department of Geography National University of Singapore117570Singapore

Greenhouse gases(GHGs)emitted or absorbed by lakes are an important component of the global carbon ***,few studies have focused on the GHG dynamics of eutrophic saline lakes,thus preventing a comprehensive understanding of the carbon ***,we conducted four sampling analyses using a floating chamber in Daihai Lake,a eutrophication saline lake in Inner Mongolia Autonomous Region,China,to explore its carbon dioxide(CO_(2))and methane(CH_(4))*** mean CO_(2)emission flux(FCO_(2))and CH_(4)emission flux(FCH_(4))were 17.54±14.54 mmol/m^(2)/day and 0.50±0.50 mmol/m^(2)/day,*** results indicated that Daihai Lake was a source of CO_(2)and CH_(4),and GHG emissions exhibited temporal *** mean CO_(2)partial pressure(p CO_(2))and CH_(4)partial pressure(p CH_(4))were 561.35±109.59μatm and 17.02±13.45μatm,which were supersaturated relative to the *** regression and correlation analysis showed that the main influencing factors of p CO_(2)were wind speed,dissolved oxygen(DO),total nitrogen(TN)and Chlorophyll a(Chl.a),whereas the main influencing factors of p CH_(4)were water temperature(WT),Chl.a,nitrate nitrogen(NO_(3)^(-)-N),TN,dissolved organic carbon(DOC)and water *** regulated carbon mineralization and organic matter decomposition,and it was an important influencing factor of p CO_(2)and p CH_(4).Additionally,the trophic level index(TLI)significantly increased p CH_(4).Our study elucidated that salinity and eutrophication play an important role in the dynamic changes of GHG ***,research on eutrophic saline lakes needs to be strengthened.

关键词： Eutrophication Salinity Greenhouse gas emissions Inland lake Inner Mongolia Autonomous Region

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Host plant traits play a crucial role in shaping the composition of epiphytic microbiota in the arid desert,Northwest China

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Journal of Arid Land 2024年第5期16卷 699-724页

作者： ZHANG Jun ZHANG Yuanming ZHANG Qi State Key laboratory of Desert and Oasis ecology Key Laboratory of Ecological Safety and Sustainable Development in Arid LandsXinjiang Institute of Ecology and GeographyChinese Academy of SciencesUrumqi 830011China Xinjiang Key laboratory of Biodiversity Conservation and Application in Arid Lands Xinjiang Institute of Ecology and GeographyChinese Academy of SciencesUrumqi 830011China Xinjiang Field Scientific Observation Research Station of Tianshan Wild Fruit Forest Ecosystem Yili Botanical GardenXinjiang Institute of Ecology and GeographyChinese Academy of SciencesUrumqi 830011China College of Life Sciences Shihezi UniversityShihezi 832003China

Phyllosphere microorganisms are a crucial component of environmental microorganisms,highly influenced by host characteristics,and play a significant role in plant health and ***,the impact of host characteristics on shaping phyllosphere microbial communities of plants with different life forms remains *** high-throughput sequencing technology,this study analyzed the diversity and community composition of phyllosphere epiphytic microorganisms(e.g.,bacteria and fungi)of various plant life forms in the hinterland of the Gurbantunggut Desert,Northwest *** annotation of prokaryotic taxa(FAPROTAX)and fungi function guild(FUNGuild)were employed to assess the ecological functions of microorganisms and to investigate the role of stochastic and deterministic processes in shaping phyllosphere microbial *** showed a diverse array of phyllosphere epiphytic microorganisms in the desert plants,with Proteobacteria,Cyanobacteria,and Actinobacteriota dominating bacterial community,while Ascomycota and Basidiomycota were prevalent in fungal *** across different plant life forms highlighted distinct microbial communities,indicating strong filtering effects by plant *** prediction identified intracellular parasites(accounting for 27.44%of bacterial community abundance),chemoheterotrophy(10.12%),and phototrophy(17.41%)as the main functions of epiphytic bacteria on leaves of different life form *** prediction indicated that phyllosphere epiphytic fungi primarily served as Saprotrophs(81.77%),Pathotrophs(17.41%),and Symbiotrophs(0.82%).Co-occurrence network analysis demonstrated a predominance of positive correlations among different microbial ***-Crick dissimilarity index analysis revealed that deterministic processes predominantly influenced phyllosphere bacterial and fungal community *** partitioning analysis and random forest modeling suggested that pla

关键词： phyllosphere epiphytic bacteria phyllosphere epiphytic fungi community structure community diversity functional diversity plant life form plant functional traits

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Rubber-based agroforestry systems modify the soil fungal composition and function in Southwest China

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Soil ecology Letters 2024年第3期6卷 97-107页

作者： Zhenyu Hong Xinai Li Debao Li Jianping Wu Ministry of Education Key laboratory for Transboundary Ecosecurity of Southwest China Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology and Institute of BiodiversitySchool of Ecology and Environmental ScienceYunnan UniversityKunming 650500China laboratory of Soil ecology and Health in Universities of Yunnan Province Yunnan UniversityKunming 650500China Dali University Dali 671003China

Rubber-based agroforestry systems have been recognized as a practical and sustainable solution to promote the development of agriculture and the ***,interactions between fungal communities and these systems are still not sufficiently *** this study,we compared the abundance,diversity,and community composition of soil fungi in four treatments,including rubber monoculture and three rubber-based agroforestry treatments involving intercropping with Camellia sinensis,Coffea liberica,and Theobroma *** results revealed that the community composition exhibited significant variation between the four different treatments,while the overall soilα-diversity was relatively stable across all *** pH and soil organic carbon were significantly related to the structure of the fungal *** particular,the complexity of the functional fungal network increased in response to agroforestry treatments,promoting beneficial fungi and suppressing certain plant *** results suggest that rubber-based agroforestry systems can promote the health of soil microbial community composition,and therefore provide an effective approach to enhancing soil quality.

关键词： agroforestry system with intercropping rubber monoculture fungal community fungal function tropical forest

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