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Robust transcriptional indicators of immune cell death revealed by spatiotemporal transcriptome analyses

Molecular Plant 2022年第6期15卷 1059-1075页

作者： Jose Salguero-Linares Irene Serrano Nerea Ruiz-Solani Marta Salas-Gómez Ujjal Jyoti Phukan Victor Manuel González MartíBernardo-Faura Marc Valls David Rengel Nuria S.Coll Centre for Research in Agricultural Genomics(CRAG) CSIC-IRTA-UAB-UBCampus UABBellaterra08193 BarcelonaSpain lipm Universitéde ToulouseINRACNRS84195 Castanet-TolosanFrance INRAE GeT-PlaGeGenotoul31326 Castanet-TolosanFrance Department of Genetics Universitat de Barcelona08028 BarcelonaSpain Consejo Superior de Investigaciones Científicas(CSIC) BarcelonaSpain Department of Plant Molecular Biology and Physiology.Albrechtvon Haller Institute for Plant Sciences niversity of GottingenJulia-Lermontowa-Weg3.37077 GottingenGrmany Institut de Phammacologie et de Biologie Structurale IPBS Universite deToulouse CNRSUPSBP 64182205 route de Nartxonne310077 Toulouse Cedex 04France

Recognition of a pathogen by the plant immune system often triggers a form of regulated cell death traditionally known as the hypersensitive response(HR).This type of cell death occurs precisely at the site of pathogen recognition,and it is restricted to a few *** research has shed light on how plant immune receptors are mechanistically ***,two central key questions remain largely unresolved:how does cell death zonation take place,and what are the mechanisms that underpin this phenomenon?Consequently,bona fide transcriptional indicators of HR are lacking,which prevents deeper insight into its mechanisms before cell death becomes macroscopic and precludes early or live *** this study,to identify the transcriptional indicators of HR we used the paradigmatic Arabidopsis thaliana–Pseudomonas syringae pathosystem and performed a spatiotemporally resolved gene expression analysis that compared infected cells that will undergo HR upon pathogen recognition with bystander cells that will stay alive and activate *** data revealed unique and time-dependent differences in the repertoire of differentially expressed genes,expression profiles,and biological processes derived from tissue undergoing HR and that of its ***,we generated a pipeline based on concatenated pairwise comparisons between time,zone,and treatment that enabled us to define 13 robust transcriptional HR *** these genes,the promoter of an uncharacterized AAA-ATPase was used to obtain a fluorescent reporter transgenic line that displays a strong spatiotemporally resolved signal specifically in cells that will later undergo pathogen-triggered cell *** valuable set of genes can be used to define cells that are destined to die upon infection with HR-triggering bacteria,opening new avenues for specific and/or high-throughput techniques to study HR processes at a single-cell level.

关键词： Arabidopsis thaliana cell death indicator effector-triggered immunity hypersensitive response pattern-triggered immunity plant immunity Pseudomonas syringae

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Calcium-Dependent Protein Kinase CPK21 Functions in Abiotic Stress Response in Arabidopsis thaliana

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Molecular Plant 2011年第1期4卷 83-96页

作者： Sandra Franz Britta Ehlert Anja Liese Joachim Kurth Anne-Claire Cazale Tina Romeis Department of Plant Biochemistry Institute for Biology Freie Universitat Berlin Koenigin-Luise-Str. 12-16 14195 Berlin Germany Department of Plant Microbe Interactions Max-Planck-lnstil:ute for Plant Breeding Research Carl-von-Linne-Weg 10 50935 Cologne Germany Present address: Laboratoire des Interactions Plantes Micro-organismes (lipm) UMR CNRS-INRA 25941441 31320 Castanet-Tolosan France

Calcium-dependent protein kinases （CDPKs） comprise a family of plant serine/threonine protein kinases in which the calcium sensing domain and the kinase effector domain are combined within one molecule. So far, a biological function in abiotic stress signaling has only been reported for few CDPK isoforms, whereas the underlying biochemical mechanism for these CDPKs is still mainly unknown. Here, we show that CPK21 from Arabidopsis thaliana is biochemically activated in vivo in response to hyperosmotic stress. Loss-of-function seedlings of cpk21 are more tolerant to hyperosmotic stress and mutant plants show increased stress responses with respect to marker gene expression and metabolite accumulation. In transgenic Arabidopsis complementation lines in the cpk21 mutant background, in which either CPK21 wildtype, or a full-length enzyme variant carrying an amino-acid substitution were stably expressed, stress responsitivity was restored by CPK21 but not with the kinase inactive variant. The biochemical characterization of in planta synthesized and purified CPK21 protein revealed that within the calcium-binding domain, N-terminal EF1- and EF2-motifs compared to C-terminal EF3- and EF4-motifs differ in their contribution to calcium-regulated kinase activity, suggesting a crucial role for the N-terminal EF-hand pair. Our data provide evidence for CPK21 contributing in abiotic stress signaling and suggest that the N-terminal EF-hand pair is a calcium-sensing determinant controlling specificity of CPK21 function.

关键词： Abiotic/environmental stress calcium signaling/transport Arabidopsis CDPK EF-hand.

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ABA-Mediated Inhibition of Germination Is Related to the Inhibition of Genes Encoding Cell-Wall Biosynthetic and Architecture： Modifying Enzymes and Structural Proteins in Medicago truncatula Embryo Axis

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Molecular Plant 2009年第1期2卷 108-119页

作者： Christine Gimeno-Gilles Eric Lelievre Laure Viau Mustafa Malik-Ghulam Claudie Ricoult Andreas Niebel Nathalie Leduc Anis M. Limami University of Angers UMR_A 1191 Physiologie Moleculaire des Semences (PMS) 2 Bd Lavoisier F-49045 Angers France UMR 441 CNRs-INRA Laboratoire de Biologie Moleculaire des Relations Plantes Micro-organismes (LIPM) Castanet-Tolosan 31326 cedex France University of Angers UMR Sciences Agronomiques Appliques a I'Horticulture (SAGAH) 2 Bd Lavoisier F-49045 Angers France

Radicle emergence and reserves mobilization are two distinct programmes that are thought to control germination. Both programs are influenced by abscissic acid （ABA） but how this hormone controls seed germination is still poorly known. Phenotypic and microscopic observations of the embryo axis of Medicago truncatula during germination in mitotic inhibition condition triggered by 10 μM oryzalin showed that cell division was not required to allow radicle emergence. A suppressive subtractive hybridization showed that more than 10% of up-regulated genes in the embryo axis encoded proteins related to cell-wall biosynthesis. The expression of α-expansins, pectin-esterase, xylogucan-endotransglycosidase, cellulose synthase, and extensins was monitored in the embryo axis of seeds germinated on water, constant and transitory ABA. These genes were overexpressed before completion of germination in the control and strongly inhibited by ABA. The expression was re-established in the ABA transitory-treatment after the seeds were transferred back on water and proceeded to germination. This proves these genes as contributors to the completion of germination and strengthen the idea that cell-wall loosening and remodeling in relation to cell expansion in the embryo axis is a determinant feature in germination. Our results also showed that ABA controls germination through the control of radicle emergence, namely by inhibiting cell-wall loosening and expansion.

关键词： ABA cell-wall expansion germination Medicago truncatula radicle emergence XET.

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THE 4C APPROACH AS A WAY TO UNDERSTAND SPECIES INTERACTIONS DETERMINING INTERCROPPING PRODUCTIVITY

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Frontiers of Agricultural Science and Engineering 2021年第3期8卷 387-399页

作者： Eric JUSTES Laurent BEDOUSSAC Christos DORDAS Ela FRAK Gaetan LOUARN Simon BOUDSOCQ Etienne-Pascal JOURNET Anastasios LITHOURGIDIS Chrysanthi PANKOU Chaochun ZHANG Georg CARLSSON Erik Steen JENSEN Christine WATSON Long LI CIRAD Persyst Department34398 MontpellierFrance AGIR Univ ToulouseENSFEAINRAECastanet-TolosanFrance School of Agriculture Aristotle University of ThessalonikiThessalonikiGreece INRAE UR4URP3F86600 LusignanFrance INRAE UMR Eco&Sols34398 MontpellierFrance AGIR Univ ToulouseINRAECastanet-TolosanFrance lipm Univ ToulouseCNRSCastanet-TolosanFrance China Agriculture University(CAU) Beijing 100193China Swedish University of Agricultural Sciences(SLU) AlnarpSweden Scotland’s Rural College(SRUC) AberdeenUK

Modern agriculture needs to develop transition pathways toward agroecological,resilient and sustainable farming *** key pathway for such agroecological intensification is the diversification of cropping systems using intercropping and notably cereal-grain legume *** mixtures or intercrops have the potential to increase and stabilize yields and improve cereal grain protein concentration in comparison to sole *** mixtures are complex and the 4C approach is both a pedagogical and scientific way to represent the combination of four joint effects of Competition,Complementarity,Cooperation,and Compensation as processes or effects occurring simultaneously and dynamically between species over the whole cropping *** is when plants have fairly similar requirements for abiotic resources in space and time,the result of all processes that occur when one species has a greater ability to use limiting resources(e.g.,nutrients,water,space,light)than *** is when plants grown together have different requirements for abiotic resources in space,time or *** is when the modification of the environment by one species is beneficial to the other(s).Compensation is when the failure of one species is compensated by the other(s)because they differ in their sensitivity to abiotic *** 4C approach allows to assess the performance of arable intercropping versus classical sole cropping through understanding the use of abiotic resources.

关键词： compensation competition complementarity cooperation interspecific interactions land equivalent ratio light nutrients species mixtures water

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