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Genome-wide SNP markers provided insights into the reproductive strategy and genetic diversity of the green tide causative species Ulva prolifera in China

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Journal of Oceanology and Limnology 2024年第2期42卷 533-543页

作者： Song SUN Weiwei MA Nan WANG Song FENG Yan SUN CAS key laboratory of marine ecology and environmental sciences Institute of OceanologyChinese Academy of SciencesQingdao 266071China laboratory for marine ecology and environmental Science Laoshan LaboratoryQingdao 266237China Jiaozhou Bay marine Ecosystem Research Station Chinese Academy of SciencesQingdao 266071China University of Chinese Academy of sciences Beijing 100049China

Ulva prolifera is the causative species of the annually occurring large-scale green tides in China since *** specific biological features on reproductivity strategies,as well as intra-species genetic diversity,are still largely unknown,especially at the genome level,despite their importance in understanding the formation and outbreak of massive green *** the present study,the restriction site-associated DNA genotyping approach(2b-RAD)was adopted to identify the genome-wide single-nucleotide polymorphisms(SNPs)of 54 individual thalli including samples collected from Subei Shoal in 2019 and Qingdao coast from 2019 to *** genotype results revealed that most of the thalli in 2019 and 2020 were haploid gametophytes,while only half of the thalli were gametophytes in 2021,indicating flexibility in the reproductive strategies for the formation of the green tides among different years and the dominance of asexual and vegetative reproductive mode for the floating ***,population analysis was conducted,and it revealed a very low genetic diversity among samples from Subei Shoal and the Qingdao coast in the same year and a higher divergence among samples in different *** results showed the efficiency of 2b-RAD in the exploration of SNPs in *** and provided the first genome-wide scale evidence for the origin of the large-scale green tides on the Qingdao *** study improved our understanding of the reproductive strategy and genetic diversity of the green tide causative species and will help further reveal the biological causes of the green tide in China.

关键词： green tide Ulva prolifera 2b-RAD single-nucleotide polymorphism(SNP) reproductive strategy genetic diversity

Spatial patterns of zooplankton abundance,biovolume,and size structure in response to environmental variables:a case study in the Yellow Sea and East China Sea

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Journal of Oceanology and Limnology 2024年第1期42卷 113-127页

作者： Song SUN Haochen XIAN Xiaoxia SUN Mingliang ZHU Mengtan LIU key laboratory of marine ecology and environmental sciences Institute of OceanologyChinese Academy of SciencesQingdao 266071China Jiaozhou Bay National marine Ecosystem Research Station Institute of OceanologyChinese Academy of SciencesQingdao 266071China University of Chinese Academy of sciences Beijing 100049China laboratory for marine ecology and environmental Science Laoshan LaboratoryQingdao 266237China

The Yellow Sea(YS)and East China Sea(ECS)are highly dynamic marginal seas of the northwestern Pacific *** gain an in-depth understanding of zooplankton community structure,zooplankton abundance,biovolume,and size structure in summer 2017 in the YS and ECS were assessed using ZooScan imaging *** abundance and biovolume ranged 2.94–1187.14 inds./m^(3)and 3.13–3438.51 mm^(3)/m^(3),*** on the biovolume data of the categorized size classes of 26 identified taxonomic groups,the zooplankton community was classified into five groups,and each group was coupled with distinctive oceanographic *** the influence of the Yellow Sea Cold Water Mass,the Yellow Sea offshore group featured the lowest bottom temperature(10.84±3.42℃)and the most abundant Calanoids(mainly in the 2–3 mm size class).In the Yellow Sea inshore group,Hydrozoans showed the largest biovolume and dominated in the 3–4-mm and>5-mm size *** East China Sea offshore group,which was affected by the Kuroshio Branch Current,featured high temperature and salinity,and the lowest bottom dissolved oxygen(2.58±0.5 mg/L).The lowest values of zooplankton abundance and biovolume in the East China Sea offshore group might be attributed to the bottom dissolved oxygen *** East China Sea inshore group,which was mainly influenced by the Zhejiang-Fujian Coastal Current and Changjiang Diluted Water,was characterized by high chlorophyll a and the largest biovolume of carnivorous Siphonophores(280.82±303.37 mm^(3)/m^(3)).The Changjiang River estuary offshore group showed the most abundant Cyclopoids,which might be associated with the less turbid water mass in this *** temperature was considered the most important factor in shaping the size compositions of Calanoids in different groups.

关键词： zooplankton size structure ZooScan Yellow Sea East China Sea

Experimental clearance rate and intraguild predation of jellyfish Cyanea nozakii

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Journal of Oceanology and Limnology 2024年第1期42卷 128-140页

作者： Pengpeng WANG Fang ZHANG Song SUN Shuguo LÜ CAS key laboratory of marine ecology and environmental sciences Institute of OceanologyChinese Academy of SciencesQingdao 266071China laboratory for marine ecology and environmental sciences Pilot National Laboratory for Marine Science and Technology(Qingdao)Qingdao 266237China University of Chinese Academy of sciences Beijing 100049China Jiaozhou Bay marine Ecosystem Research Station Chinese Academy of SciencesQingdao 266071China Center for Ocean Mega-Science Chinese Academy of SciencesQingdao 266071China Institute of marine ecology and Environment Hainan Academy of Environmental SciencesHaikou 570100China

Cyanea nozakii,a common jellyfish distributed in offshore China,has a complex trophic relationship with other zooplankton ***,few studies have reported the predation rates and prey selection patterns of *** medusae on different prey *** is also lacking on the intraguild predation of Aurelia coerulea(another common bloom jellyfish in offshore China)by *** address the knowledge gaps,the clearance rates of *** for different prey items,including copepods(small1000μm),fish larvae,and gelatinous prey(hydromedusae,*** ephyrae,and chaetognaths),were *** influence of predator size on the clearance rate was also ***,we examined the intraguild predation of *** on *** *** clearance rates of *** varied widely with prey organisms,being independent of prey *** organisms,except for chaetognaths,were captured with considerably high efficiency,followed by fish larvae and copepods,indicating the preferential prey selection of gelatinous organisms by *** clearance rate increased linearly with the cross-sectional area of *** size in medusae may,to some extents,underpin their capacity to capture more prey by increasing the encounter rate and capture success through *** preyed voraciously on *** in high feeding efficiency,but the clearance rate decreased with increasing ***(as prey)*** phenomenon of intraguild predation suggests a speculative hypothesis of potential population regulation of *** by *** information regarding the feeding ecology of *** reported in this study is important for understanding plankton dynamics in marine ecosystems with extensive occurrences of this jellyfish.

关键词： Scyphomedusae predation rate gelatinous organisms prey selection feeding mechanism

Morphological and molecular analyses of a Philine kinglipini outbreak in summer of 2022 in Jiaozhou Bay,China

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Journal of Oceanology and Limnology 2024年第3期42卷 831-848页

作者： Zelin DUAN Yanan YU Jing WANG Junlong ZHANG Nansheng CHEN CAS key laboratory of marine ecology and environmental sciences Institute of OceanologyChinese Academy of SciencesQingdao 266071China laboratory of marine ecology and environmental Science Laoshan LaboratoryQingdao 266237China Center for Ocean Mega-Science Chinese Academy of SciencesQingdao 266071China laboratory of marine Organism Taxonomy and Phylogeny Qingdao Key Laboratory of Marine Biodiversity and ConservationInstitute of OceanologyChinese Academy of SciencesQingdao 266071China marine Biological Museum Chinese Academy of SciencesQingdao 266071China Department of Molecular Biology and Biochemistry Simon Fraser UniversityBurnabyBritish ColumbiaV5A 1S6Canada

A sudden and unprecedented outbreak of molluscan Philine kinglipini occurred in summer 2022 in Jiaozhou Bay,Shandong,China,causing substantial damage to local mariculture industry of the Manila clam Ruditapes *** *** has been found in many coastal regions of China,the molecular research of *** has not been extensively studied,making it difficult to accurately identify and track *** samples in field using molecular *** were collected during the outbreak and their morphological features and molecular sequences were *** show that the causative species of the outbreak was *** mitochondrial genome(mt DNA)of *** was constructed for the first time,based on which phylogenetic analysis of the mt DNAs of *** and related species in the order Cephalaspidea was carried *** revealed by metabarcoding analysis of 18S rDNA V4,the seasonal change of *** and closely related Philine species was striking with peaks between April and ***,metabarcoding analysis is applicable tool for monitoring the bloom development of *** and related *** study generated for the first time essential molecular marker sequences and mtDNA of ***,which provided a reference for future characterization and monitoring of its outbreaks and for phylogenetic analysis of Philine species.

关键词： marine species outbreaks metabarcoding analysis mitochondrial genome Philine kinglipini phylogenetics spatial-temporal dynamics

Characterization,expression dynamics,and potential function of OPA1 for regulation of mitochondrial morphology during spermiogenesis in Phascolosoma esculenta

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Journal of Oceanology and Limnology 2024年第1期42卷 187-200页

作者： Xinming GAO Binbin FENG Chen DU Congcong HOU Shan JIN Daojun TANG Junquan ZHU key laboratory of Applied marine Biotechnology by the Ministry of Education and key laboratory of marine Biotechnology of Zhejiang Province School of Marine SciencesNingbo UniversityNingbo 315211China College of ecology Lishui UniversityLishui 323000China

Mitochondria undergo morphological changes during spermatogenesis in some *** mechanism and role of mitochondrial morphology regulation,however,remain somewhat *** this study,we analyzed the molecular characteristics,expression dynamics and subcellular localization of optic atrophy protein 1(OPA1),a mitochondrial fusion and cristae maintenance-related protein,to reveal the possible regulatory mechanisms underlying mitochondrial morphology in Phascolosoma esculenta *** full-length cDNA of the *** opa1 gene(Pe-opa1)is 3743 bp in length and encodes 975 amino *** Pe-OPA1 protein is highly conservative and includes a transmembrane domain,a GTPase domain,two helical bundle domains,and a lipid-interacting *** and protein expression was higher in the coelomic fluid(a site of spermatid development)of male *** and increased first and then decreased from March to ***,their expression during the breeding stage was significantly higher than during the non-breeding stage,suggesting that Pe-OPA1 is involved in *** *** Pe-OPA1 protein was more abundant in components consisting of many spermatids than in components without,indicating that Pe-OPA1 mainly plays a role in the spermatid in coelomic ***,Pe-OPA1 was mainly detected in the spermatid *** experiments showed that the Pe-OPA1 are constitutively expressed and co-localized with mitochondria during spermiogenesis,suggesting its involvement in *** *** results provide evidence for Pe-OPA1's involvement in the regulation of mitochondrial morphology during spermiogenesis.

关键词： optic atrophy protein 1(OPA1) spermiogenesis Phascolosoma esculenta mitochondrial dynamics spermatid

Insight into the Inhibition of the Poisonous Sulfide Production from Sulfate-Reducing Microbiota in Mariculture Habitat

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Journal of Ocean University of China 2024年第2期23卷 447-454页

作者： ZHAO Xuning ZHANG Zhiming ZHAO Yangguo MUPINDU Progress Shandong Provincial key laboratory of marine Environment and Geological Engineering(MEGE) College of Environmental Science and EngineeringOcean University of ChinaQingdao 266100China key laboratory of marine environmental Science and ecology(Ocean University of China) Ministry of EducationQingdao 266100China

The production of toxic sulfides is a common environmental problem in ***,the effective inhibition of sulfidogens is the key to prevent sulfides *** this study,the possibility and mechanism of nitrate(NO_(3)^(−))inhibiting the activity of the sulfate-reducing microbiota(SRM)from mariculture sediments was *** results showed that 1,3,and 5 mmol L^(−1)NO_(3)^(−)continuously inhibited sulfide production for 1-3 *** NO_(3)^(−) dosage increased to 7 mmol L^(−1),the duration of inhibition increased to 6 *** product NO_(2)^(−)heavily inhibited the activity of dissimilar sulfate reductase gene(dsrB)by 3 orders,which was the main reason that the sulfate-reducing activity was *** SRM structure changed significantly with the dosage of NO_(3)^(−),while the abundance of sulfidogens Desulfovibrio species increased due to their capability of detoxifying nitrite through nitrite ***,sulfidogens Desulfovibrio species are more adaptable to a high nitrate/nitrite environment,and the traditional control strategies by dosing nitrate/nitrite should be paid more attention *** findings will serve as helpful guidelines for sulfate-reducing microbiota in the habitat of mariculture to reduce their generation of poisonous sulfide.

关键词： sulfate-reducing microbiota sulfide nitrate Desulfovibrio mariculture

Evaluation of water management on arsenic methylation and volatilization in arsenic-contaminated soils strengthened by bioaugmentation and biostimulation

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Journal of environmental sciences 2024年第3期137卷 515-526页

作者： Peng Chen Yi Liu Guo-Xin Sun State key laboratory of Urban and Regional ecology Research Center for Eco-Environmental SciencesChinese Academy of SciencesBeijing 100085China key laboratory of Aquatic Botany and Watershed ecology Wuhan Botanical GardenChinese Academy of SciencesWuhan 430074China University of Chinese Academy of sciences Beijing 100049China

Arsenic(As) fate in paddy fields has been one of the most significant current issues due to the strong As accumulation potential of rice plants under fooded conditions. However,no attempt was done to explore As methylation and volatilization under non-fooded conditions. Herein, we investigated the effects of water management on As methylation and volatilization in three arsenic-contaminated soils enhanced by biostimulation with strawderived organic matter and bioaugmentation with genetic engineered Pseudomonas putida KT2440(GE P. putida). Under fooded conditions, the application of biochar(BC), rice straw(RS)and their combination(BC+RS) increased total As in porewater. However, these effects were greatly attenuated under non-fooded conditions. Compared with RS amendment alone, the combination of GE P. putida and RS further promoted the As methylation and volatilization,and the promotion percentage under non-fooded conditions were significantly higher than that under fooded conditions. The combined GE P. putida and RS showed the highest efficiency in As methylation(88 μg/L) and volatilization(415.4 μg/(kg·year)) in the non-fooded soil with moderate As contamination. Finally, stepwise multiple linear regression analysis presented that methylated As, DOC and p H in porewater were the most important factors contributing to As volatilization. Overall, our findings suggest that combination of bioaugmentation with GE P. putida and biostimulation with RS/BC+RS is a potential strategy for bioremediation of arsenic-contaminated soils by enhancing As methylation and volatilization under non-fooded conditions.

关键词： Arsenic methylation Arsenic volatilization Water management Straw incorporation Bioaugmentation

Yuzaoea gen. nov., a new biraphid diatom(Bacillariophyceae)genus and its phylogenetic significance

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Acta Oceanologica Sinica 2024年第2期43卷 130-136页

作者： Honghan Liu Chenhong Li Lang Li Xuesong Li Lin Sun Junrong Liang Jun Zhang Yahui Gao Changping Chen key laboratory of Ministry of Education for Coastal and Wetland Ecosystems and School of Life sciences Xiamen UniversityXiamen 361102China State key laboratory of marine environmental Science Xiamen UniversityXiamen 361102China Guangxi key laboratory of marine environmental Science Guangxi Academy of Marine SciencesGuangxi Academy of SciencesNanning 530007China Beibu Gulf marine Industry Research Institute Fangchenggang 538000China

The flexed frustules in pennate diatoms are usually associated with monoraphid diatoms. Interestingly, we found a biraphid diatom species with flexed frustules in an offshore intertidal beach environment on Weizhou Island,Beihai City, Guangxi Zhuang Autonomous Region, China. Therefore, based on morphological characteristics, we described a new genus of diatoms Yuzaoea sinensis gen. et sp. nov. CH Li, HH Liu, YH Gao & CP Chen. The frustule of this genus is characterized by heterogeneous frustule with one concave valve and one convex valve,complete raphe on both valves, straight and moderately eccentric raphe, uniseriate striae and girdle bands with a single row of areolae. The most identifying feature of this genus was the flexed frustule, which is rare in biraphid diatoms and common in monoraphid diatoms. We compared the morphometric characteristics of genus Yuzaoea with genus Rhoikoneis and several genera within the family Rhoicospheniaceae, including Rhoicosphenia,Campylopyxis, and Cuneolus. Phylogenetic analyses based on SSU rRNA and rbc L showed that the genus Yuzaoea was the sister group to the clade of Rhoicosphenia with a high support value(bootstrap values = 100%), and the clade “Yuzaoea+Rhoicosphenia” was sister to the clade of monoraphid diatoms, in which the genera Achnanthidium, Planothidium and some Cocconeis with high support values(bootstrap = 100%).Morphologically, the genus Yuzaoea shares many morphological features with monoraphid diatoms like genera Achnanthidium and Planothidium and the members within the Rhoicospheniaceae. Therefore, based on a combined morphological studies and phylogenetic results we suggested that this branch may represented the evolution of one kind monoraphid diatoms, from biraphid diatoms(e.g. genus Yuzaoea), to incompleted biraphid diatoms(e.g. genera Rhoicosphenia, Campylopyxis), to monoraphid diatoms(e.g. genera Achnanthidium and Planothidium).

关键词： biraphid diatom marine new genus Rhoicospheniaceae taxonomy Yuzaoea

Taxonomy of Two New Peritrich Ciliates(Protozoa:Ciliophora)from Inland Saltwaters of China

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Journal of Ocean University of China 2024年第3期23卷 811-821页

作者： YU Ying ZHANG Yong LIANG Ziyao LI Jiqiu LIN Xiaofeng key laboratory of Ministry of Education for Coastal and Wetland Ecosystems Fujian Provincial Key Laboratory of Coastal Ecology and Environmental StudiesCollege of the Environment and EcologyXiamen UniversityXiamen 361102China School of Life Science South China Normal UniversityGuangzhou 510631China State key laboratory of marine environmental Science Xiamen UniversityXiamen 361102China

The inland saltwater lakes harbor exceptional ***,two new species of solitary sessile peritrich ciliates were isolated from Qinghai Lake,the largest inland saltwater lake in *** morphology,ciliature,silverline system,and molecular phylogeny were investigated based on live observation,silver staining,and analysis of the small subunit ribosomal DNA(SSU rDNA).Vorticella paraglobosa *** characterized mainly by its obconical or elongate bell-shaped zooid,C-shaped macronucleus,single ventrally located contractile vacuole,two-rowed infundibular polykinety 3,and 28-38 silverlines between peristome and aboral tro-chal band and 10-15 between aboral trochal band and *** cotyliformis *** from its congeners mainly by its double-layered peristomial lip,cup-shaped zooid,J-shaped macronucleus,single ventrally positioned contractile vacuole,three-rowed infundibular polykinety 3,and 70-85 silverlines between peristome and aboral trochal band and 21-25 between aboral trochal band and *** SSU rDNA sequences of the two new species were obtained,and the subsequent molecular phylogenetic analysis supported their taxonomic classification.

关键词： molecular phylogeny morphology new species Qinghai Lake taxonomy