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Rbfox1 controls alternative splicing of focal adhesion genes in cardiac muscle cells

Journal of Molecular Cell Biology 2024年第1期16卷 54-65页

作者： Peter Zorn Jaime Calvo Sánchez Tala Alakhras Barbara Schreier Michael Gekle Stefan Hüttelmaier Marcel Köhn Junior Group‘Non-coding RNAs and RBPs in Human Diseases’ Medical FacultyUniversity of Halle–Wittenberg06120 Halle(Saale)Germany julius bernstein institute of physiology Medical FacultyUniversity of Halle–Wittenberg06112 Halle(Saale)Germany institute of Molecular Medicine Medical FacultyUniversity of Halle–Wittenberg06120 Halle(Saale)Germany

Alternative splicing is one of the major cellular processes that determine the tissue-specific expression of protein ***,it remains challenging to identify physiologically relevant and tissue-selective proteins that are generated by alternative ***,we investigated the target spectrum of the splicing factor Rbfox1 in the cardiac muscle context in more *** using a combination of in silico target prediction and in-cell validation,we identified several focal adhesion proteins as alternative splicing targets of *** focused on the alternative splicing patterns of vinculin(metavinculin isoform)and paxillin(extended paxillin isoform)and identified both as potential Rbfox1 *** analyses suggested that both isoforms are promoted by Rbfox1 due to binding in the *** adhesions play an important role in the cardiac muscle context,since they mainly influence cell shape,cytoskeletal organization,and cell–matrix *** data confirmed that depletion of Rbfox1 changed cardiomyoblast morphology,cytoskeletal organization,and multinuclearity after differentiation,which might be due to changes in alternative splicing of focal adhesion ***,our results indicate that Rbfox1 promotes alternative splicing of focal adhesion genes in cardiac muscle cells,which might contribute to heart disease progression,where downregulation of Rbfox1 is frequently observed.

关键词： Rbfox1 alternative splicing focal adhesion cardiac muscle cells Topic:cardiac myocytesalternative splicingfocal adhesionsgenesintronsprotein isoformsrna splicing

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The transcriptional landscape of the developmental switch from regular pollen maturation towards microspore-derived plant regeneration in barley

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The Crop Journal 2024年第4期12卷 1064-1080页

作者： Anna Nowicka Martin Kovacik Anna Maksylewicz Przemysław Kopec Ewa Dubas Monika Krzewska Agnieszka Springer Robert E.Hoffie Diaaeldin S.Daghma Zbynek Milec Ales Pecinka Jochen Kumlehn Iwona Zur The Franciszek Górski institute of Plant physiology Polish Academy of Sciences Niezapominajek 2130-239 KrakówPoland institute of Experimental Botany of the Czech Academy of Sciences Centre of Plant Structural and Functional GenomicsŠlechtitelu3177900 OlomoucCzech Republic Department of Cell Biology and Genetics Faculty of SciencePalacky UniversityŠlechtitelu°2777900 OlomoucCzech Republic Malopolska Centre of Biotechnology Jagiellonian University30-387 KrakówPoland Leibniz institute of Plant Genetics and Crop Plant Research(IPK)Gatersleben Corrensstraße 306466 Stadt SeelandGermany institute for Breeding Research on Horticultural Crops Julius Kühn Institute(JKI)-Federal Research Centre for Cultivated PlantsErwin-Baur Straße 2706484 QuedlinburgGermany Global Change Research institute Czech Academy of Sciences Beˇlidla 986/4a60300 BrnoCzech Republic

Plant formation from in vitro-cultivated microspores involves a complex network of internal and environmental ***/doubled haploids(DHs)derived from in vitro-cultured microspores are widely used in plant breeding and genetic ***,the mechanism underlying the developmental switch from regular pollen maturation towards microspore-derived plant regeneration remains poorly ***,RNA-sequencing was employed to elucidate the transcriptional landscapes of four early stages of microspore embryogenesis(ME)in barley cultivars Golden Promise and Igri,which exhibit contrasting responsiveness to microspore-derived plant *** experiments revealed fundamental regulatory networks,specific groups of genes,and transcription factor(TF)families potentially regulating the developmental *** identified a set of candidate genes crucial for genotype-dependent responsiveness/recalcitrance to *** high-resolution temporal transcriptome atlas provides an important resource for future functional studies on the genetic control of microspore developmental transition.

关键词： Hordeum vulgare Marker gene Microspore embryogenesis Stress response Transcriptome analysis

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A small number of male-biased candidate pheromone receptors are expressed in large subsets of the olfactory sensory neurons in the antennae of drones from the European honey bee Apis mellifera

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Insect Science 2022年第3期29卷 749-766页

作者： Joerg Fleischer Alexander Rausch Kathrin Dietze Silvio Erler Sina Cassau Jurgen Krieger Martin Luther University Halle-Wittenberg Institute of Biologyl ZoologyDepartment of Animal PhysiologyHalle(Saale) institute for Bee Protection Julius Kuhn Institute(JKI)-Federal Research Centre for Cultivated PlantsBraunschweigGermany

In the European honey bee(Apis mellifera),the olfactory system is essential for foraging and intraspecific communication via *** bees are equipped with a large repertoire of olfactory receptors belonging to the insect odorant receptor(OR)*** studies have indicated that the transcription level of a few OR types including OR11,a receptor activated by the queen-released pheromone compound(2£)-9-oxodecenoic acid(9-ODA),is significantly higher in the antenna of males(drones)than in female ***,the number and distribution of antennal cells expressing male-biased ORs is ***,we analyzed antennal sections from bees by in situ hybridization for the expression of the male-biased receptors OR11,OR18,and *** results demonstrate that these receptors are expressed in only moderate numbers of cells in the antennae of females(workers and queens),whereas substantially higher cell numbers express these ORs in ***,the reported male-biased transcript levels are due to sex-specific differences in the number of antennal cells expressing these *** analyses for OR11 and OR18 in drone antennae revealed expression in two distinct subsets of olfactory sensory neurons(OSNs)that in total account for approximately 69%of the OR-positive *** high percentages of OSNs expressing given receptors are reminiscent of male-biased ORs in moths that mediate the detection of female-released sex pheromone ***,our findings indicate remarkable similarities between male antennae of bees and moths and support the concept that male-biased ORs in bee drones serve the detection of female-emitted sex pheromones.

关键词： chemosensory odorant receptor olfaction pheromone detection sensilla placodea

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Current Injection Provokes Rapid Expansion of the Guard Cell Cytosolic Volume and Triggers Ca^2＋ Signals

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Molecular Plant 2016年第3期9卷 471-480页

作者： Lena J. Voss Rainer Hedrich M. Rob G. Roelfsema Molecular Plant physiology and Biophysics Julius-von-Sachs Institute for Biosciences Biocenter Werzburg University Julius-von-Sachs-Platz 2 97082 Werzburg Germany

High-resolution microscopy opens the door for detailed single-cell studies with fluorescent reporter dyes and proteins. We used a confocal spinning disc microscope to monitor fluorescent dyes and the fluorescent protein Venus in tobacco and Arabidopsis guard cells. Multi-barreled microelectrodes were used to inject dyes and apply voltage pulses, which provoke transient rises in the cytosolic Ca^2＋ level. Voltage pulses also caused changes in the distribution of Lucifer Yellow and Venus, which pointed to a reversible increase of guard cell cytosolic volume. The dynamic cytosolic volume changes turned out to be provoked by current injection of ions. A reduction of the clamp current, by blocking K^＋ uptake channels with Cs^＋, strongly suppressed the cytosolic volume changes. Cs^＋ not only inhibited the expansion of the cytosol, but also inhibited hyperpolarization-induced elevations of the cytosolic Ca^2＋ concentration. A complete loss of voltage-induced Ca^2＋ signals occurred when Ca^2＋-permeable plasma membrane channels were simultaneously blocked with La^3＋. This shows that two mechanisms cause hyperpolarization-induced elevation of the cytosolic Ca^2＋-concentration：（i） activation of voltage-dependent Ca^2＋-permeable channels, （ii） osmotically induced expansion of the cytosol, which leads to a release of Ca^2＋ from intracellular stores.

关键词： guard cell cytosolic Ca^2+ cytosolic volume voltage clamp current injection ion channel

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Structure and Function of TPC1 Vacuole SV Channel Gains Shape

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Molecular Plant 2018年第6期11卷 764-775页

作者： Rainer Hedrich Thomas D. Mueller Dirk Becker Irene Marten institute for Molecular Plant physiology and Biophysics University of Wurzburg Julius-yon-Sachs Platz 2 97082 Wurzburg Germany

Plants and animals in endosomes operate TPCI/SV-type cation channels. All plants harbor at least one TPC1 gene. Although the encoded SV channel was firstly discovered in the plant vacuole membrane two decades ago, its biological function has remained enigmatic. Recently, the structure of a plant TPC1/SV channel protein was determined. Insights into the 3D topology has now guided site-directed mutation ap- proaches, enabling structure-function analyses of TPC1/SV channels to shed new light on earlier findings. Fou2 plants carrying a hyperactive mutant form of TPC1 develop wounding stress phenotypes. Recent studies with fou2 and mutants that lack functional TPC1 have revealed atypical features in local and long-distance stress signaling, providing new access to the previously mysterious biology of this vacuolar cation channel type in planta.

关键词： Ca^2+ sensors TPC1/SV channel vacuole membrane voltage voltage sensor

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Plant Sucrose Transporters from a Biophysical Point of View

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Molecular Plant 2011年第3期4卷 395-406页

作者： Dietmar Geiger julius-von-Sachs institute Molecular Plant Physiology and Biophysics University W6rzburg Julius-von-Sachs Platz 2 D-97082 W~rzburg Germany

The majority of higher plants use sucrose as their main mobile carbohydrate. Proton-driven sucrose trans- porters play a crucial role in cell-to-cell and long-distance distribution of sucrose throughout the plant. A very negative plant membrane potential and the ability of sucrose transporters to accumulate sucrose concentrations of more than 1 M indicate that plants evolved transporters with unique structural and functional features. The knowledge about the trans- port mechanism and structural/functional domains of these the current knowledge about the biophysical properties of nano-machines is, however, still fragmentary. In this review, plant sucrose transporters is summarized and discussed.

关键词： Biophysics electrophysiology transport processes/kinetics phloem physiology phloem unloading sucrose transport.

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POLIII-derived non-coding RNAs acting as scaffolds and decoys

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Journal of Molecular Cell Biology 2019年第10期11卷 880-885页

作者： HendrikTauber Stefan Huttelmaier Marcel Kohn institute of Molecular Medicine Section for Molecular Cell BiologyFaculty of MedicineMartin Luther University Halle-WittenbergCharles Tan ford Protein CentreKurt-Mothes-Str.3a06120 HalleGermany julius bernstein institute of physiology Faculty of MedicineMartin Luther University Halle-WittenbergCharles Tan ford Protein CentreKurt-Mothes-Str.3a06120 HalleGermany

A large variety of eukaryotic small structured POLIII-derived non-coding RNAs(ncRNAs)have been described in the ***,for only few,e.g.7SL and H1/MRP families,cellular functions are well *** the vast majority of these transcripts,cellular functions remain *** findings on the role ofY RNAs and other POLIII-derived ncRNAs suggest an evolutionarily conserved function of these ncRNAs in the assembly and function of ribonucleoprotein complexes(RNPs).These RNPs provide cellular‘machineries’,which are essential for guiding the fate and function of a variety of *** this review,we summarize current knowledge on the role of POLIII-derived ncRNAs in the assembly and function of *** propose that these ncRNAs serve as scaffolding factors that‘chaperone’RNA-binding proteins(RBPs)to form functional *** addition or associated with this role,some small ncRNAs act as molecular decoys impairing the RBP-guided control of RNA fate by competing with other RNA *** suggests that POLIII-derived ncRNAs serve essential and conserved roles in the assembly of larger RNPs and thus the control of gene expression by indirectly guiding the fate of mRNAs and IncRNAs.

关键词： ncRNA POLIII RBP scaffold RBP decoy

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Multiple Calcium-Dependent Kinases Modulate ABA-Activated Guard Cell Anion Channels

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Molecular Plant 2012年第6期5卷 1409-1412页

作者： Sonke Scherzer Tobias Maierhofer Khaled A.S. Al-Rasheid Dietmar Geiger Rainer Hedrich University of Würzburg Julius-von-Sachs-InstituteMolecular Plant Physiology and BiophysicsJulius-von-Sachs Platz 2D-97082 WürzburgGermany King Saud University Zoology DepartmentCollege of SciencePO Box 2455Riyadh 11451Saudi Arabia

Dear Editor, The plant hormone abscisic acid （ABA） governs drought stress management in plants. ABA signal transduction appears to be rather short. When under water stress con- ditions, the ABA level rises above a certain threshold and the phytohormone binds to its cytosolic RCAR/PYR/PYL-type receptor （Levchenko et al,, 2005; Joshi-Saha et al., 2011）. Following receptor activation, protein phosphatases of the clade-A PP2C type are inactivated, allowing SnRK protein kinases to phosphorylate their targets, such as bZIP tran- scription factors （Fujii et al., 2009 and references therein）. In guard cells and oocytes, we could demonstrate that the same SnRK-PP2C pair OST1-ABI1 controls the opening of the slow anion channel SLACl （Geiger et al., 2009; Lee et al., 2009）. Besides this calcium-independent activation, SLAC1 is also activated by the calcium-dependent kinases CPK21 and 23, which can be inhibited by ABI1 （Geiger et al., 2010）.

关键词： SLAC1

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NAC Transcription Factor ORE1 and Senescence- Induced BIFUNCTIONAL NUCLEASE1 （BFN1） Constitute a Regulatory Cascade in Arabidopsis

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Molecular Plant 2013年第5期6卷 1438-1452页

作者： Lilian R Matallana-Ramirez Mamoona Rauf Sarit Farage-Barhom Hakan Dortay Gang-Ping Xue Wolfgang Droge-Laser Amnon Lers Salma Balazadeh Bernd Mueller-Roeber University of Potsdam Institute of Biochemistry and Biology KarI-Liebknecht-Straβe 24-25 14476 Potsdam-Golm Germany Department of Postharvest Science of Fresh Produce. Volcani Center Agricultural Research Organization Israel CSIRO Plant Industry Brisbane Australia University of Wurzburg Julius-von-Sachs Institute Julius-von-Sachs Platz 2 97082 Wurzburg Germany Max-Planck institute of Molecular Plant physiology 14476 Potsdam-Golm Germany

Senescence is a highly regulated process that involves the action of a large number of transcription factors. The NAC transcription factor ORE1 （ANAC092） has recently been shown to play a critical role in positively controlling senescence in Arabidopsis thaliana; however, no direct target gene through which it exerts its molecular function has been identified previously. Here, we report that BIFUNCTIONAL NUCLEASE1 （BFN1）, a well-known senescence-enhanced gene, is directly regulated by ORE1. We detected elevated expression of BFN1 already 2 h after induction of ORE1 in estradiol-inducible ORE1 overexpression lines and 6 h after transfection of Arabidopsis mesophyll cell protoplasts with a 35S：ORE1 construct, ORE1 and BFN1 expression patterns largely overlap, as shown by promoter-reporter gene （GUS） fusions, while BFN1 expression in senescent leaves and the abscission zones of maturing flower organs was virtually absent in ore1 mutant background. In vitro binding site assays revealed a bipartite ORE1 binding site, similar to that of ORS1, a paralog of ORE1. A bipartite ORE1 binding site was identified in the BFN1 promoter; mutating the cis-element within the context of the full-length BFN1 promoter drastically reduced OREl-mediated transactivation capacity in tran- siently transfected Arabidopsis mesophyll cell protoplasts. Furthermore, chromatin immunoprecipitation （CHIP） demon- strates in vivo binding of ORE1 to the BFN1 promoter. We also demonstrate binding of ORE1 in vivo to the promoters of two other senescence-associated genes, namely SAG29/SWEET15 and SINA1, supporting the central role of ORE1 during senescence.

关键词： Arabidopsis thaliana senescence transcription factor ORE1 BFN1 promoter.

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TPC1 - SV Channels Gain Shape

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Molecular Plant 2011年第3期4卷 428-441页

作者： Rainer Hedrich Irene Marten University Wuerzburg Institute for Molecular Plant Physiology and Biophysics Julius-von-Sachs Platz 2 D-97082 Wuerzburg Germany King Saud University Zoology Department College of Science RO. Box 2455 Riyadh 11451 Saudi Arabia

The most prominent ion channel localized in plant vacuoles is the slow activating SV type. Slow vacuolar （SV） channels were discovered by patch clamp studies as early as 1986. In the following two decades, numerous studies revealed that these calcium- and voltage-activated, nonselective cation channels are expressed in the vacuoles of all plants and every plant tissue. The voltage-dependent properties of the SV channel are susceptible to modulation by calcium, pH, redox state, as well as regulatory proteins. In Arabidopsis, the SV channel is encoded by the AtTPC1 gene, and even though its gene product represents the by far largest conductance of the vacuolar membrane, tpcl-loss-of-function mutants appeared not to be impaired in major physiological functions such as growth, development, and reproduction. In contrast, the fou2 gain-of-function point mutation D454N within TPC1 leads to a pronounced growth phenotype and increased synthesis of the stress hormone jasmonate. Since the TPC1 gene is present in all land plants, it likely encodes a very general function. In this review, we will discuss major SV channel properties and their impact on plant cell physiology.

关键词： SV channel TPC1 vacuole transport CICR.

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