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Cost-Effective Method of Gene Synthesis by Sequencing from Microchip-Derived Oligos for Droplet Cloning

Advances in Bioscience and Biotechnology 2024年第8期15卷 474-485页

作者： Kimberly Wang jericho senior high school Jericho NY USA

Gene synthesis has provided important contributions in various fields including genomics and medicine. Current genes are 7 - 30 cents depending on the assembly and sequencing methods performed. Demand for gene synthesis has been increasing for the past few decades, yet available methods remain expensive. A solution to this problem involves microchip-derived oligonucleotides (oligos), an oligo pool with a substantial number of oligo fragments. Microchips have been proposed as a tool for gene synthesis, but this approach has been criticized for its high error rate during sequencing. This study tests a possible cost-effective method for gene synthesis utilizing fragment assembly and golden gate assembly, which can be employed for quicker manufacturing and efficient execution of genes in the near future. The droplet method was tested in two trials to determine the viability of the method through the accuracy of the oligos sequenced. A preliminary research experiment was performed to determine the efficacy of oligo lengths ranging from two to four overlapping oligos through Gibson assembly. Of the three oligo lengths tested, only two fragment oligos were correctly sequenced. Two fragment oligos were used for the second experiment, which determined the efficacy of the droplet method in reducing gene synthesis cost and speed. The first trial utilized a high-fidelity polymerase and resulted in 3% correctly sequenced oligos, so the second trial utilized a non-high-fidelity polymerase, resulting in 8% correctly sequenced oligos. After calculating, the cost of gene synthesis lowers down to 0.8 cents/base. The final calculated cost of 0.8 cents/base is significantly cheaper than other manufacturing costs of 7 - 30 cents/base. Reducing the cost of gene synthesis provides new insight into the cost-effectiveness of present technologies and protocols and has the potential to benefit the fields of bioengineering and gene therapy.

关键词： Cost-Effective Gene Synthesis Microchip Oligo Droplet Cloning

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Computational Quantification of Map Projection Distortion by Fractal Dimension of Coastlines

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Journal of Applied Mathematics and Physics 2024年第5期12卷 1890-1903页

作者： Franklin Lee jericho high school Jericho New York USA

Maps, essential tools for portraying the Earth’s surface, inherently introduce distortions to geographical features. While various quantification methods exist for assessing these distortions, they often fall short when evaluating actual geographic features. In our study, we took a novel approach by analyzing map projection distortion from a geometric perspective. We computed the fractal dimensions of different stretches of coastline before and after projection using the divide-and-conquer algorithm and image processing. Our findings revealed that map projections, even when preserving basic shapes, inevitably stretch and compress coastlines in diverse directions. This analysis method provides a more realistic and practical way to measure map-induced distortions, with significant implications for cartography, geographic information systems (GIS), and geomorphology. By bridging the gap between theoretical analysis and real-world features, this method greatly enhances accuracy and practicality when evaluating map projections.

关键词： Map Projection Distortion Coastline Fractal Dimension Cartography Geographic Information Systems

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Unconditional and Optimal Pointwise Error Estimates of Finite Difference Methods for the Two-Dimensional Complex Ginzburg-Landau Equation

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Journal of Mathematical Research with Applications 2024年第2期44卷 248-268页

作者： Yue CHENG Dongsheng TANG school of Mathematics and Statistics Nantong University Jiangsu Xinhai senior high school

In this paper, we give improved error estimates for linearized and nonlinear CrankNicolson type finite difference schemes of Ginzburg-Landau equation in two dimensions. For linearized Crank-Nicolson scheme, we use mathematical induction to get unconditional error estimates in discrete L2and H1norm. However, it is not applicable for the nonlinear ***, based on a ‘cut-off ’ function and energy analysis method, we get unconditional L2and H1error estimates for the nonlinear scheme, as well as boundedness of numerical solutions. In addition, if the assumption for exact solutions is improved compared to before, unconditional and optimal pointwise error estimates can be obtained by energy analysis method and several Sobolev inequalities. Finally, some numerical examples are given to verify our theoretical analysis.

关键词： complex Ginzburg-Landau equation finite difference method unconditional convergence optimal estimates pointwise error estimates

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The Limbal Niche and Its Role in Maintaining Corneal Regeneration

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Open Journal of Ophthalmology 2024年第1期14卷 76-91页

作者： Jaysukh P. Singh Syosset senior high school Syosset New York USA

In recent years, stem cells have been a focal point in research designed to evaluate the efficacy of ophthalmologic therapies, specifically those for corneal conditions. The corneal epithelium is one of the few regions of the body that maintains itself using a residual stem cell population within the adjacent limbus. Stem cell movement has additionally captivated the minds of researchers due to its potential application in different body regions. The cornea is a viable model for varying methods to track stem cell migratory patterns, such as lineage tracing and live imaging from the limbus. These developments have the potential to pave the way for future therapies designed to ensure the continuous regeneration of the corneal epithelium following injury via the limbal stem cell niche. This literature review aims to analyze the various methods of imaging used to understand the limbal stem cell niche and possible future directions that might be useful to consider for the better treatment and prevention of disorders of the cornea and corneal epithelium. .

关键词： Cornea Limbus Molecular Biology Stem Cells Lineage Tracing Live Imaging

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Solid-state atomic hydrogen as a broad-spectrum RONS scavenger for accelerated diabetic wound healing

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National Science Review 2024年第2期11卷 196-206页

作者： Man Luo Qin Wang Gang Zhao Wei Jiang Cici Zeng Qingao Zhang Ruyu Yang Wang Dong Yunxi Zhao Guozhen Zhang Jun Jiang Yucai Wang Qing Zhu Key Laboratory of Precision and Intelligent Chemistry School of Chemistry and Materials Science University of Science and Technology of China Department of Radiology The First Affiliated Hospital of University of Science and Technology of China Division of Life Sciences and Medicine University of Science and Technology of China Shenzhen senior high school Institute of Intelligent Innovation Henan Academy of Sciences

Hydrogen therapy shows great promise as a versatile treatment method for diseases associated with the overexpression of reactive oxygen and nitrogen species（RONS）. However, developing an advanced hydrogen therapy platform that integrates controllable hydrogen release, efficient RONS elimination, and biodegradability remains a giant technical challenge. In this study, we demonstrate for the first time that the tungsten bronze phase H0.53WO3（HWO） is an exceptionally ideal hydrogen carrier, with salient features including temperature-dependent highly-reductive atomic hydrogen release and broad-spectrum RONS scavenging capability distinct from that of molecular hydrogen. Moreover, its unique p H-responsive biodegradability ensures post-therapeutic clearance at pathological sites. Treatment with HWO of diabetic wounds in an animal model indicates that the solid-state atomic H promotes vascular formation by activating M2-type macrophage polarization and anti-inflammatory cytokine production, resulting in acceleration of chronic wound healing. Our findings significantly expand the basic categories of hydrogen therapeutic materials and pave the way for investigating more physical forms of hydrogen species as efficient RONS scavengers for clinical disease treatment.

关键词： atomic hydrogen RONS scavenger inflammatory regulation diabetic wound healing hydrogen therapy

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First-principles study of electronic and magnetic properties of Fe atoms on Cu_(2)N/Cu(100)

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Chinese Physics B 2024年第8期33卷 498-503页

作者：陈佳乐胡军 Institute of high Pressure Physics School of Physical Science and TechnologyNingbo UniversityNingbo 315211China

First-principles calculations were conducted to investigate the structural,electronic,and magnetic properties of single Fe atoms and Fe dimers on Cu_(2)N/Cu(100).Upon adsorption of an Fe atom onto Cu_(2)N/Cu(100),robust Fe-N bonds form,resulting in the incorporation of both single Fe atoms and Fe dimers within the surface Cu_(2)N *** partial occupancy of Fe-3d orbitals lead to large spin moments on the Fe ***,both single Fe atoms and Fe dimers exhibit in-plane magnetic anisotropy,with the magnetic anisotropy energy(MAE)of an Fe dimer exceeding twice that of a single Fe *** magnetic anisotropy can be attributed to the predominant contribution of the component along the x direction of the spin-orbital coupling ***,the formation of Fe-Cu dimers may further boost the magnetic anisotropy,as the energy levels of the Fe-3d orbitals are remarkably influenced by the presence of Cu *** study manifests the significance of uncovering the origin of magnetic anisotropy in engineering the magnetic properties of magnetic nanostructures.

关键词： magnetic nanostructures magnetic anisotropy spin–orbital coupling ultrathin substrate

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Diophantine equations and Fermat's last theorem for multivariate(skew-)polynomials

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Applied Mathematics(A Journal of Chinese Universities) 2024年第1期39卷 159-173页

作者： PAN Jie JIA Yu-ming LI Fang school of Mathematical Sciences Zhejiang UniversityHangzhou 310058China Henan Experimental high school Zhengzhou 450003China

Fermat’s Last Theorem is a famous theorem in number theory which is diﬃcult to ***,it is known that the version of polynomials with one variable of Fermat’s Last Theorem over C can be proved very *** aim of this paper is to study the similar problems about Fermat’s Last Theorem for multivariate(skew)-polynomials with any characteristic.

关键词： Fermat's last theorem polynomial ring skew polynomial ring

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Six-Dimensional Guidance: The Strategies of Thinking Quality Cultivation in senior high school English Discourse Learning

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Journal of Contemporary Educational Research 2024年第3期8卷 237-245页

作者： Junjie Sun Haining No.2 senior high school Haining 314400Zhejiang ProvinceChina

Taking the discourse learning of the new senior high school English textbook published by the People’s Education Press as an example,combined with the“six-dimensional guidance”deep reading strategy,and through the six-skill training strategies of“memory skill training,understanding skill training,application skill training,analytical skill training,evaluation skill training,creative skill training,”this paper aims to cultivate students’thinking profundity,logic,flexibility,sensitivity,criticality,and *** also promotes the real implementation of senior high school English deep reading that points to the cultivation of thinking quality in classroom teaching,and realizes the transformation from“conventional reading”to“deep reading”that reflects the core literacy of the discipline.

关键词： Six-dimensional guidance high school English Discourse learning Thinking quality Strategy

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Perception field based imitation learning for unlabeled multi-agent pathfinding

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Science China(Information Sciences) 2024年第5期67卷 115-135页

作者： Wenjie CHU Ailun YU Wei ZHANG Haiyan ZHAO Zhi JIN school of Computer Science Peking University Key Laboratory of high-Confidence Software Technologies (Peking University) Ministry of Education

This paper proposes an imitation learning method to learn a universal agent policy for unlabeled multi-agent pathfinding(unlabeled MAPF) in grid environments. The method transforms the unlabeled MAPF problem into a series of temporal-independent homogeneous classification problems for each *** on this transformation, a neural network is designed to imitate a distance-optimal expert *** neural network consists of two successive modules: perception field learner and field integrating *** former refines and encodes the current system state into a perception field for each agent by combining a set of learnable field-generating functions. The latter takes an agent's perception field as input and decides the agent's next action based on a triplet cross-attention mechanism. We evaluate our method on a diverse set of unlabeled MAPF tasks. Compared with state-of-the-art counterparts, the experimental results manifest the superiority of the proposed method in both generalization ability and scalability.

关键词： unlabeled multi-agent pathfinding perception field triplet cross-attention multi-agent imitation learning learning-based planning

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Magnetic Switching Dynamics and Tunnel Magnetoresistance Effect Based on Spin-Splitting Noncollinear Antiferromagnet Mn_(3)Pt

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Chinese Physics Letters 2024年第4期41卷 132-138页

作者：朱蒙董建艇李新录郑凡星周晔吴琨张佳 school of Physics and Wuhan National high Magnetic Field Center Huazhong University of Science and TechnologyWuhan 430074China

In comparison to ferromagnets,antiferromagnets are believed to have superior advantages for applications in next-generation magnetic storage devices,including fast spin dynamics,vanishing stray fields and robust against external magnetic field,***,unlike ferromagnetic orders,which could be detected through tunneling magnetoresistance effect in magnetic tunnel junctions,the antiferromagnetic order(i.e.,Néel vector)cannot be effectively detected by the similar mechanism due to the spin degeneracy of conventional *** discovered spin-splitting noncollinear antiferromagnets,such as Mn_(3)Pt with momentum-dependent spin polarization due to their special magnetic space group,make it possible to achieve remarkable tunneling magnetoresistance effects in noncollinear antiferromagnetic tunnel *** first-principles calculations,we demonstrate that the tunneling magnetoresistance ratio can reach more than 800% in Mn_(3)Pt/perovskite oxides/Mn_(3)Pt antiferromagnetic tunnel *** also reveal the switching dynamics of Mn_(3)Pt thin film under magnetic fields using atomistic spin dynamic *** study provides a reliable method for detecting Néel vector of noncollinear antiferromagnets through the tunnel magnetoresistance effect and may pave its way for potential applications in antiferromagnetic memory devices.

关键词： tunneling magnetoresistance momentum

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