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Chromosomal-level genome and metabolome analyses of highly heterozygous allohexaploid Dendrocalamus brandisii elucidate shoot quality and developmental characteristics

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Journal of Integrative Plant Biology 2024年第6期66卷 1087-1105页

作者： Jutang Jiang Zeyu Zhang Yucong Bai Xiaojing Wang Yuping Dou Ruiman Geng Chongyang Wu Hangxiao Zhang Cunfu Lu Lianfeng Gu Jian Gao Key Laboratory of National forestry and Grassland Administration Beijing for Bamboo&Rattan Science and TechnologyInstitute of Gene Science and Industrialization for Bamboo and Rattan ResourcesInternational Center for Bamboo and RattanBeijing 100102China College of forestry Basic Forestry and Proteomics Research CenterFujian Agriculture and Forestry UniversityFuzhou 350002China School of Life science Peking UniversityBeijing 100871China College of Biological sciences and Biotechnology Beijing Forestry UniversityBeijing 100083China

Dendrocalamus brandisii(Munro)Kurz is a sympodial bamboo species with inimitable taste and flavorful *** rapid growth and use as high-quality material make this bamboo species highly valued for both food processing and wood ***,genome information for *** is lacking,primarily due to its polyploidy and large genome ***,we assembled a high-quality genome for hexaploid ***,which comprises 70chromosomes with a total size of 2,756 Mb,using long-read Hi Fi ***,we accurately separated the genome into its three constituent *** used Oxford Nanopore Technologies long reads to construct a transcriptomic dataset covering 15 tissues for gene annotation to complement our genome assembly,revealing differential gene expression and post-transcriptional *** integrating metabolome analysis,we unveiled that well-balanced lignin formation,as well as abundant flavonoid and fructose contents,contribute to the superior quality of *** *** genomic,transcriptomic,and metabolomic datasets provided a solid foundation for enhancing bamboo shoot quality and developing efficient gene-editing *** study should facilitate research on *** and enhance its use as a food source and wood material by providing crucial genomic resources.

关键词： bamboo shoots Dendrocalamus brandisii(Munro)Kurz flavonoid genome lignin

Mechanical Behavior of Bamboo,and Its Biomimetic Composites and Structural Members:A Systematic Review

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Journal of Bionic Engineering 2024年第1期21卷 56-73页

作者： Shanyu Han Yuyuan He Hanzhou Ye Xueyong Ren Fuming Chen Kewei Liu Sheldon Q.Shi Ge Wang institute of Biomaterials for Bamboo and Rattan Resources International Centre for Bamboo and RattanBeijing 100102China Key Laboratory of National forestry and Grassland Administration/Beijing for Bamboo&Rattan science and Technology Beijing 100102China National forestry and Grassland Engineering Technology Center for wood Resources Recycling College of Materials Science and TechnologyBeijing Forestry UniversityBeijing 100083China International Bamboo and Rattan Organization Beijing 100102China School of Civil Engineering Tsinghua UniversityBeijing 100084China Mechanical Engineering Department University of North TexasDentonTX 762077102USA

Bamboo is a typical biological material widely growing in nature with excellent physical and mechanical *** is lightweight with high strength and *** naturally optimized bamboo structure,which has inspired global material scientists and engineers for decades,is significantly important for the bionic design of novel structural materials with ultra-light,ultra-strong,or ultra-tough and comprehensive *** literature on innovative composite materials and structural members inspired by bamboo are reviewed in this paper,and the research progress and prospects in this field are expounded in three ***,the structural characteristics of the bamboo wall layer along the thickness and height directions are described in terms of chemical composition,gradient structure,pore structure,and hollow structure with variable ***,this paper summarizes the research progress on new composite materials and structural components by applying bamboo’s structural features from the perspective of sustainability,designability,and ***,given the limitations of current research,the biomimetic scientific research on bamboo’s structural characteristics is prospected from the interpretation of bamboo structure,new bamboo-like materials,and structural design optimization perspectives,providing a reference for future research on biomimetic aspects of biomass.

关键词： Bamboo Structural characteristics-Bamboo-like material Physical and mechanical properties

Variability of urban fractional vegetation cover and its driving factors in 328 cities in China

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science China Earth sciences 2024年第2期67卷 466-482页

作者： Fei FENG Xin YANG Baoquan JIA Xiaoting LI Xianwen LI Chengyang XU Kaicun WANG Research Centre of Urban forestry Key Laboratory for Silviculture and Forest Ecosystem of State Forestry and Grassland AdministrationBeijing Forestry UniversityBeijing100083China State Key Laboratory of Earth Surface Processes and Resource Ecology Beijing Normal UniversityBeijing100875China Research institute of forestry Chinese Academy of ForestryBeijing100091China School of Architecture Tsinghua UniversityBeijing100084China College of Urban and Environmental sciences Sino-French Institute for Earth System ScienceInstitute of Carbon NeutralityPeking UniversityBeijing100871China

Urban green space promotes the health of urban residents,enhances urban ecosystem biodiversity,mitigates environmental pollution,and attenuates urban heat island ***,urban vegetation cover is highly heterogeneous and difficult to *** this study,the variation of urban fractional vegetation cover(FVC)in 328 cities in China from 1990 to2022 was quantified based on Landsat satellite data at a 30-m *** was found that from 1990 to 2005,due to increases in building density and impervious surfaces in cities,the national mean urban vegetation cover decreased from 0.38 to ***2005,urban vegetation cover began to reverse,reaching 0.45 in *** increasing trend was most pronounced in newly built urban *** decrease in average urban vegetation cover before 2005 was mainly due to the expansion of low vegetation cover areas,while the increase in urban vegetation cover after 2005 manifested as the expansion of high vegetation cover *** reversal in the trend of urban vegetation cover change after 2004 is related to the gradual implementation of national policies requiring increased urban green space *** urban gross domestic product(GDP)showed the highest correlation with changes in urban vegetation *** large and medium-sized cities,the top three factors influencing vegetation cover were GDP,urban population,and ***,for cities in arid/semi-arid regions,changes in vegetation cover were more sensitive to climatic factors(such as precipitation).Although the urban vegetation cover in China has substantially increased in recent years,the urban green space in small-sized cities and in the old urban districts of large-sized cities still have room to improve.

关键词： Urban vegetation Urban vegetation cover Urbanization Remote sensing

Evaluation of Mechanical Properties and Surface Quality of wood from Bosnia and Herzegovina Exposed to Outdoor Conditions

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Journal of Renewable Materials 2024年第8期12卷 1417-1431页

作者： Redžo Hasanagić UmejrŠljivo Leila Fathi Pallavi Gautam Mohsen Bahmani Miha Humar Department of wood science and Technology Faculty of Technical EngineeringUniversity of BihaćBihać77000Bosnia and Herzegovina Department of wood and Furniture Industry Engineering Faculty of Resources and Earth ScienceShahrekord UniversityShahrekord64165478Iran Department of Botany Institute of ScienceBanaras Hindu UniversityVaranasiUttar Pradesh221005India Biotechnical Faculty Department of Wood ScienceUniversity of LjubljanaLjubljana1501Slovenia

This study investigated the mechanical properties of beech(Fagus sylvatica L.)and fir(Abies alba)wood from Bosnia and Herzegovina under outdoor *** were exposed for 3-month exposure to assess bending strength,color changes,and surface *** showed outdoor exposure negatively affected mechanical properties,particularly in samples with extended finger joints,causing significant surface cracks in uncoated *** wood exhibited notable color changes under exposure,with approximately 50%darkening without coating compared to 25%under covered *** samples displayed minimal color changes,affirming the efficacy of surface *** wood exhibited a roughness of 8.264μm,while beechwood average roughness increased from 6.767 to 13.916μm after exposure,with micro-pore development affecting water *** analysis identified prevalent fungal colonies,including Penicillium,Aureobasidium,Sclerophoma,and Chaetomium,underscoring their role in organic matter *** study highlights the importance of wood exposure and treatment selection for various applications.

关键词： Mechanical properties outdoor conditions cracks wood species

The miR159a-DUO1 module regulates pollen development by modulating auxin biosynthesis and starch metabolism in citrus

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Journal of Integrative Plant Biology 2024年第7期66卷 1351-1369页

作者： Yanhui Xu Wenxiu Tian Minqiang Yin Zhenmei Cai Li Zhang Deyi Yuan Hualin Yi Juxun Wu National Key Laboratory for Germplasm Innovation&Utilization of Horticultural Crops Huazhong Agricultural UniversityWuhan 430070China Key Laboratory of Cultivation and Protection for Non‐wood Forest Trees of the Ministry of Education and Key Laboratory of Non‐wood Forest Products of the forestry Ministry Central South University of Forestry and TechnologyChangsha 410004China

Achieving seedlessness in citrus varieties is one of the important objectives of citrus *** sterility associated with abnormal pollen development is an important factor in ***,our understanding of the regulatory mechanism underlying the seedlessness phenotype in citrus is still ***,we determined that the miR159a-DUO1 module played an important role in regulating pollen development in citrus,which further indirectly modulated seed development and fruit *** the overexpression of csi-miR159a and the knocking out of DUO1 in Hong Kong kumquat(Fortunella hindsii)resulted in small and seedless fruit ***,pollen was severely aborted in both transgenic lines,with arrested pollen mitotic I and abnormal pollen starch *** additional cross-pollination experiments,DUO1 was proven to be the key target gene for miR159a to regulate male sterility in *** on DNA affinity purification sequencing(DAP-seq),RNA-seq,and verified interaction assays,YUC2/YUC6,SS4 and STP8 were identified as downstream target genes of DUO1,those were all positively regulated by *** transgenic *** lines,the miR159a-DUO1 module down-regulated the expression of YUC2/YUC6,which decreased indoleacetic acid(IAA)levels and modulated auxin signaling to repress pollen mitotic *** miR159a-DUO1 module reduced the expression of the starch synthesis gene SS4 and sugar transport gene STP8 to disrupt starch metabolism in ***,this work reveals a new mechanism by which the miR159a-DUO1 module regulates pollen development and elucidates the molecular regulatory network underlying male sterility in citrus.

关键词： auxin citrus male sterility miRNA pollen development seedlessness starch metabolism

Flower development and sexual dimorphism in Vernicia montana

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Horticultural Plant Journal 2024年第2期10卷 586-600页

作者： Wenying Li Jingzhen Chen Xiang Dong Meilan Liu Guibin Wang Lin Zhang Key Laboratory of Cultivation and Protection for Non-wood Forest Trees Ministry of EducationCentral South University of Forestry and TechnologyChangshaHunan 410004China State Key Laboratory of Utilization of woody Oil Resource Hunan Academy of ForestryChangshaHunan 410004China College of forestry Nanjing Forestry UniversityNanjingJiangsu 210037China

The mu oil tree(Vernicia montana Lour.) is a dioecious species, but the genetic mechanisms underlying its phenotypic sexual dimorphism are unclear. In this study, we determined two pivotal phases of sex differentiation of mu oil tree via morphological and histological analyses of unisexual flowers:(Ⅰ) differentiation of male or female primordia to produce staminate flowers(SFs) or transient hermaphrodite flowers(HFs),and(Ⅱ) complete abortion of stamens in transient HFs to generate pistillate flowers(PFs). A total of 1621 sex-biased genes were identified by comparative transcriptome analysis which exhibited elevated rates of protein evolution than unbiased genes. The female-biased genes were enriched in the production of defense compounds while male-biased genes were focused on the production of viable pollens. Transcriptomebased analysis revealed that the differentially expressed genes(DEGs) between PFs and SFs in phase Ⅰ involved in abscisic acid(ABA), auxin(AUX), cytokinin(CK), ethylene(ET), and gibberellin(GA) biosynthesis and signaling showed higher expression levels in males than in females in general, whereas the DEGs involved in jasmonic acid(JA) and salicylic acid(SA) pathways displayed opposite expression patterns. Moreover,differentially expressed endogenous ABA, AUX, GAs, JA, and SA exhibited consistent biased expression patterns with the DEGs by UPLC-MSbased analysis. Exogenous application of an anti-ethylene plant growth regulator could promote the development of stamens in PFs and generated HFs. Comparative transcriptomic and hormonal analyses of PFs and SFs in phase Ⅱ indicated an increase in ET concentration when abortion of stamens in PFs occurred. This study suggested that phytohormones play key roles in sex dimorphism and ET may determine the development of stamens in PFs of mu oil tree, which provides an insight into plant sex differentiation mechanisms.

关键词： Mu oil tree Flower development Sexual dimorphism Sex bias Ethylene

Tree allometry responses to competition and complementarity in mixed-species plantations of Betula alnoides

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Forest Ecosystems 2024年第4期11卷 469-479页

作者： Boyao Chen Kaili Liu Chunsheng Wang Junjie Guo Junkun Lu Lin Chen Zhigang Zhao Jie Zeng Research institute of Tropical forestry Chinese Academy of ForestryGuangzhou510520China Central South University of forestry&Technology Changsha410004China Experimental Center of Tropical forestry Chinese Academy of ForestryPingxiang532600China Nanjing forestry University Nanjing210037China

Tree allometry plays a crucial role in tree survival,stability,and timber quantity and quality of mixed-species ***,the responses of tree allometry to resource utilisation within the framework of interspecific competition and complementarity remain poorly *** into consideration strong-and weakspace competition(SC and WC),as well as N_(2)-fixing and non-N_(2)-fixing tree species(FN and nFN),a mixedspecies planting trial was conducted for Betula alnoides,a pioneer tree species,which was separately mixed with Acacia melanoxylon(SC+FN),Erythrophleum fordii(WC+FN),Eucalyptus cloeziana(SC+nFN)and Pinus kesiya ***(WC+nFN)in southern *** years after planting,tree growth,total nitrogen(N)and carbon(C)contents,and the natural abundances of^(15)N and^(13)C in the leaves were measured for each species,and the mycorrhizal colonisation rates of *** were investigated under each *** variations and their relationships with space competition and nutrient-related factors were *** results showed a consistent effect of space competition on the height-diameter relationship of *** in mixtures with FN or *** tree height growth of *** was significantly promoted under high space competition,and growth in diameter at breast height(DBH),tree height and crown size were all expedited in mixtures with *** symbiotic relationship between ectomycorrhizal fungi and *** was significantly influenced by both space competition and N_(2) fixation by the accompanying tree species,whereas such significant effects were absent for arbuscular mycorrhizal ***,high space competition significantly decreased the water use efficiency(WUE)of ***,and its N use efficiency(NUE)was much lower in the FN *** equation modeling further demonstrated that the stem allometry of *** was affected by its NUE and WUE via changes in its height growth,and crown allometry was influ

关键词： Allometric relationship Resources competition and complementarity Mixed-species forest Tree-fungal symbiotic relationship N_2-fixing tree species Resource utilisation strategies

BACNN: Multi-scale feature fusion-based bilinear attention convolutional neural network for wood NIR classification

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Journal of forestry Research 2024年第4期35卷 202-214页

作者： Zihao Wan Hong Yang Jipan Xu Hongbo Mu Dawei Qi College of science Northeast Forestry UniversityHarbin 150040People’s Republic of China

Effective development and utilization of wood resources is *** modification research has become an integral dimension of wood science research,however,the similarities between modified wood and original wood render it challenging for accurate identification and classification using conventional image classification ***,the development of efficient and accurate wood classification techniques is *** paper presents a one-dimensional,convolutional neural network(i.e.,BACNN)that combines near-infrared spectroscopy and deep learning techniques to classify poplar,tung,and balsa woods,and PVA,nano-silica-sol and PVA-nano silica sol modified woods of *** results show that BACNN achieves an accuracy of 99.3%on the test set,higher than the 52.9%of the BP neural network and 98.7%of Support Vector Machine compared with traditional machine learning methods and deep learning based methods;it is also higher than the 97.6%of LeNet,98.7%of AlexNet and 99.1%of ***,the classification method proposed offers potential applications in wood classification,especially with homogeneous modified wood,and it also provides a basis for subsequent wood properties studies.

关键词： wood classification Near infrared spectroscopy Bilinear network SE module Anti-noise algorithm

Litter quality and decomposer complexity co-drive effect of drought on decomposition

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Forest Ecosystems 2024年第3期11卷 329-338页

作者： Shumei Wang Junwei Luan Siyu Li Jinhao Ma Lin Chen Yi Wang Shirong Liu Sanya Research Base International Centre for Bamboo and RattanSanya572022China institute of Resources and Environment Key Laboratory of Bamboo and Rattan Science and Technology of National Forestry and Grassland AdministrationInternational Centre for Bamboo and RattanBeijing100102China Key Laboratory of Forest Ecology and Environment of National forestry and Grassland Administration Ecology and Nature Conservation InstituteChinese Academy of ForestryBeijing100091China Experimental Center of Tropical forestry Chinese Academy of ForestryPingxiang532600China institute of Qinghai-Tibetan Plateau Southwest Minzu UniversityChengdu610041China

Litter decomposition is key to ecosystem carbon(C)and nutrient cycling,but this process is anticipated to weaken due to projected more extensive and prolonged *** how litter quality and decomposer community complexity regulate decomposition in response to drought is less ***,in a five-year manipulative drought experiment in a Masson pine forest,leaf litter from four subtropical tree species(Quercus griffthii Hook.f.&Thomson ex Miq.,Acacia mangium Willd.,Pinus massoniana Lamb.,Castanopsis hystrix Miq.)representing different qualities was decomposed for 350 d in litterbags of three different mesh sizes(i.e.,0.05,1,and 5 mm),respectively,under natural conditions and a 50%throughfall rain exclusion *** of increasing mesh sizes discriminate decomposer communities(i.e.,microorganisms,microorganisms and mesofauna,microorganisms and meso-and macrofauna)that access the litter and represent an increasing *** amount of litter C and nitrogen(N)loss,and changes in their ratio(C/N_(loss)),as well as small and medium-sized decomposers including microorganisms,nematodes,and arthropods,were *** found that drought did not affect C and N loss but decreased C/N_(loss)(i.e.,decomposer N use efficiency)of leaf litter irrespective of litter quality and decomposer ***,changes in the C/N_(loss)and the drought effect on C loss were both dependent on litter quality,while drought and decomposer complexity interactively affected litter C and N *** decomposer community complexity enhanced litter decomposition and allowing additional access of meso-and macro-fauna to litterbags mitigated the negative drought effect on the microbial-driven ***,both the increased diversity and altered trophic structure of nematode due to drought contributed to the mitigation effects via cascading *** results show that litter quality and soil decomposer community complexity co-drive the effect of

关键词： Arthropod Drought Decomposer community Nutrient cycling Nematode