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Alpine grassland degradation intensifies the burrowing behavior of small mammals:evidence for a negative feedback loop

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Integrative Zoology 2024年第2期19卷 240-252页

作者： Zaiwei WANG Jiawen YAN Amy MARTIN Dianne HBRUNTON Jiapeng QU Jin-Sheng HE Weihong JI Zhibiao NAN State key laboratory of Herbage Improvement and Grassland Agro-Ecosystems College of Pastoral Agriculture Science and TechnologyLanzhou UniversityLanzhouChina Manaaki Whenua-Landcare Research LincolnNew Zealand School of Natural Sciences Massey University(Albany Campus)AucklandNew Zealand key laboratory of Adaptation and Evolution of Plateau Biota Northwest Institute of Plateau BiologyChinese Academy of SciencesXiningChina Qinghai Haibei National Field Research Station of Alpine Grassland Ecosystem Northwest Institute of Plateau BiologyChinese Academy of SciencesXiningChina Institute of Ecology College of Urban and Environmental Sciencesand Key Laboratory for Earth Surface Processes of the Ministry of EducationPeking UniversityBeijingChina

Globally,grassland degradation is an acute ecological *** alpine grassland on the Tibetan Plateau,increased densities of various small mammals in degraded grassland are assumed to intensify the degradation process and these mammals are subject to lethal ***,whether the negative impact of small mammals is solely a result of population size or also a result of activity and behavior has not been *** this study,we use plateau pika as a model to compare population size,core area of colony,and the number of burrow entrances and latrines between lightly and severely degraded *** test whether the alleged contribution of pika to grassland degradation is a result of increased population size or increased burrowing activities of individuals in response to lower food *** found that grassland degradation resulted in lower plant species richness,plant height,and ***,the overall population size of pika was not significantly affected by location in lightly and severely degraded ***,pika core areas in severely grassland degradation were significantly larger and had significantly higher densities of burrows and *** study provides convincing evidence that habitat-induced changes in the behavior of small,burrowing mammals,such as pika,can exacerbate grassland *** finding has significant implications for managing small mammals and restoring degraded grassland ecosystems.

关键词： burrowing behavior grassland degradation plateau pika population size small mammals

Application of VIGS system to explore the function of common wheat TaADF7

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BIOCELL 2022年第2期46卷 559-565页

作者： HUIZE CHEN XINGTIAN JIA HAIYAN RAN JINGRONG NIU MEITING DU higher education key laboratory of plant molecular and environmental stress response Shanxi Normal UniversityLinfen041000China School of Life Sciences Shanxi Normal UniversityLinfen041000China

As an allohexaploid plant,common wheat has a complex gene structure,making it difficult to study its gene ***-induced gene silencing(VIGS)is an important tool for the rapid analysis of plant gene *** this study,the gene silencing system,namely,barley stripe mosaic virus(BSMV)-VIGS induced by BSMV was used to silence the wheat phytoene desaturase(TaPDS)and actin depolymerization factor(TaADF7)genes and determine the effect of gene silencing on *** was used as an indicator gene to determine the feasibility of VIGS system,while TaADF7 was used as a test gene to determine its effect on wheat *** showed that the leaves of tobacco and wheat were bleached by the mixture of pCaBS-α,pCaBS-β,and pCaBS-γ::TaPDS,indicating that the TaPDS gene was silenced,and the bleached leaves had physiological activity as determined by trypan blue ***,the VIGS system was efficient and *** the tobacco was treated with pCaBS-α,pCaBS-β,and pCaBS-γ::TaADF7,the viral suspension was *** expression of TaADF7 gene was downregulated after wheat leaves were infected by friction,indicating that the expression of TaADF7 was *** confocal scanning microscopy showed that the silencing of TaADF7 enhanced the fluorescence of microfilament skeleton in mesophyll protoplasts and significantly reduced the plant *** showed that TaADF7 affected cell division and plant growth by inhibiting microfilament *** conclusion,the BSMV-VIGS system was used to silence wheat TaPDS and TaADF7 *** phenomenon was observed in wheat leaves after TaPDS *** TaADF7 silencing,microfilaments in wheat mesophyll cells gathered into coarse bundles,which affected the dynamics of microfilaments and inhibited plant growth.

关键词： Gene silencing Microfilament binding protein Crop Wheat

Haplotype-based phylogenetic analysis and population genomics uncover the origin and domestication of sweetpotato

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molecular plant 2024年第2期17卷 277-296页

作者： Mengxiao Yan Ming Li Yunze Wang Xinyi Wang M-Hossein Moeinzadeh Dora G.Quispe-Huamanquispe Weijuan Fan Yijie Fang Yuqin Wang Haozhen Nie Zhangying Wang Aiko Tanaka Bettina Heider Jan F.Kreuze Godelieve Gheysen Hongxia Wang Martin Vingron Ralph Bock Jun Yang Shanghai key laboratory of plant Functional Genomics and Resources Shanghai Chenshan Botanical GardenShanghai 201602China College of Life Sciences Chongqing Normal UniversityChongqing 401331China Biotechnology and Nuclear Technology Research Institute Sichuan Academy of Agricultural SciencesChengdu 610061China College of Life Sciences Shanghai Normal UniversityShanghai 200234China Department of Computational molecular Biology Max Planck Institute for Molecular GeneticsIhnestraBe 63-7314195 BerlinGermany Department of Biotechnology Ghent University9000 GhentBelgium Guangdong Provincial key laboratory of Crops Genetics and Improvement Crop Research InstituteGuangdong Academy of Agricultural SciencesGuangzhou 510640China Graduate School of Bioagricultural Sciences Nagoya UniversityChikusaNagoya 464-8601Japan international Potato Center(CIP) LimaPeru CAS Center for Excellence of molecular plant Sciences Institute of Plant Physiology and EcologyChinese Academy of SciencesShanghai 200233China Max-Planck-Institut fur Molekulare Pflanzenphysiologie Am Muhlenberg 114476 Potsdam-GolmGermany

The hexaploid sweetpotato(lpomoea batatas)is one of the most important root crops ***,its genetic origin remains controversial,and its domestication history remains *** this study,we used a range of genetic evidence and a newly developed haplotype-based phylogenetic analysis to identify two probable progenitors of *** diploid progenitor was likely closely related to lpomoea ae-quatoriensis and contributed the B,subgenome,IbT-DNA2,and the lineage 1 type of chloroplast genome to *** tetraploid progenitor of sweetpotato was most likely *** 4x,which donated the B2 subgenome,IbT-DNA1,and the lineage 2 type of chloroplast *** most likely originated from reciprocal crosses between the diploid and tetraploid progenitors,followed by a subsequent whole-genome *** addition,we detected biased gene exchanges between the subgenomes;the rate of B,to B2 subgenome conversions was nearly three times higher than that of B2 to B subgenome *** analyses revealed that genes involved in storage root formation,maintenance of genome stabil-ity,biotic resistance,sugar transport,and potassium uptake were selected during the speciation and domestication of *** study sheds light on the evolution of sweetpotato and paves the way forimprovementofthiscrop.

关键词： sweetpotato origin gene conversion domestication IbT-DNA HPA

Duplicated chalcone synthase(CHS)genes modulate flavonoid production in tea plants in response to light stress

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Journal of Integrative Agriculture 2024年第6期23卷 1940-1955页

作者： Mingzhuo Li Wenzhao Wang Yeru Wang Lili Guo Yajun Liu Xiaolan Jiang Liping Gao Tao Xia State key laboratory of Tea plant Biochemistry and Utilization Anhui Agricultural UniversityHefei 230036China School of Life Sciences Anhui Agricultural UniversityHefei 230036China College of Horticulture Northwest A&F UniversityYangling 712100China Department of plant and Microbial Biology North Carolina State UniversityRaleigh 27606NCUSA

In tea plants,the abundant flavonoid compounds are responsible for the health benefits for the human body and define the astringent flavor *** the downstream mechanisms of flavonoid biosynthesis have been extensively studied,the role of chalcone synthase(CHS)in this secondary metabolic process in tea plants remains less *** this study,we compared the evolutionary profile of the flavonoid metabolism pathway and discovered that gene duplication of CHS occurred in tea *** identified three CsCHS genes,along with a CsCHS-like gene,as potential candidates for further functional *** the CsCHS-like gene,the CsCHS genes effectively restored flavonoid production in Arabidopsis ***,CsCHS transgenic tobacco plants exhibited higher flavonoid compound accumulation compared to their wild-type *** notably,our examination of promoter and gene expression levels for the selected CHS genes revealed distinct responses to UV-B stress in tea *** findings suggest that environmental factors such as UV-B exposure could have been the key drivers behind the gene duplication events in CHS.

关键词： tea flavonoids biosynthesis CHS gene duplication UV-B stress

Discrepant responses of soil organic carbon dynamics to nitrogen addition in different layers: a case study in an agroecosystem

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Frontiers of Agricultural Science and Engineering 2024年第2期11卷 314-325页

作者： Hualing HU Liang ZHAO Wenbing TAN Guoan WANG Beidou XI Technical Centre for Soil Agriculture and Rural Ecology and EnvironmentMinistry of Ecology and EnvironmentBeijing 100012China State key laboratory of environmental Criteria and Risk Assessment Chinese Research Academy of Environmental SciencesBeijing 100012China College of Resources and environmental Sciences China Agricultural UniversityBeijing 100193China

Empirical research indicates that heightened soil nitrogen availability can potentially diminish microbial decomposition of soil organic carbon(SOC).Nevertheless, the relationship between SOC turnover response to N addition and soil depth remains unclear. In this study, soils under varying N fertilizer application rates were sampled up to 100 cm deep to examine the contribution of both new and old carbon to SOC across different soil depths,using a coupled carbon and nitrogen isotopic approach. The SOC turnover time for the plot receiving low N addition(250 kg·ha^(-1)·yr^(-1) N) was about 20-40 years. Conversely, the plot receiving high N(450 kg·ha^(-1)·yr^(-1) N) had a longer SOC turnover time than the low N plot, reaching about 100 years in the upper 10-20 cm layer. The rise in SOC over the entire profile with low N addition primarily resulted from an increase in the upper soil(0-40 cm)whereas with high N addition, the increase was mainly from greater SOC in the deeper soil(40-100 cm). Throughout the entire soil layer, the proportion of new organic carbon derived from maize C_4 plant sources was higher in plots treated with a low N rate than those treated with a high N rate. This implies that, in contrast to low N addition agricultural practices, high N addition predominantly enhances the soil potential for fixing SOC by transporting organic matter from surface soils to deeper layers characterized by more stable properties. This research offers a unique insight into the dynamics of deep carbon under increased N deposition, thereby aiding in the formulation of policies for soil carbon management.

关键词： ^(13)C natural abundance nitrogen addition soil depth organic carbon turnover

The changes in soil organic carbon stock and quality across a subalpine forest successional series

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Forest Ecosystems 2024年第4期11卷 423-433页

作者： Fei Li Zhihui Wang Jianfeng Hou Xuqing Li Dan Wang Wanqin Yang Zhejiang Provincial key laboratory of plant Evolutionary Ecology and Conservation School of Life SciencesTaizhou UniversityTaizhou 318000China Linhai Station of Zhejiang Provincial Forest Ecological Research Taizhou UniversityTaizhou 318000China Taizhou key laboratory of Mountain Ecological Restoration and Special Industry Cultivation Taizhou UniversityTaizhou 318000China Hawkesbury Institute for the Environment Western Sydney UniversityPenrithNew South WalesAustralia

Soil organic carbon(SOC)affects the function of terrestrial ecosystem and plays a vital role in global carbon ***,large uncertainty still existed regarding the changes in SOC stock and quality with forest ***,the stock and quality of SOC at 1-m soil profile were investigated across a subalpine forest series,including shrub,deciduous broad-leaved forest,broadleaf-conifer mixed forest,middle-age coniferous forest and mature coniferous forest,which located at southeast of Tibetan *** results showed that SOC stock ranged from 9.8 to29.9 kg·m^(-2),and exhibited a hump-shaped response pattern across the forest successional *** highest and lowest SOC stock was observed in the mixed forest and shrub forest,*** SOC stock had no significant relationships with soil temperature and litter stock,but was positively correlated with wood debris ***,the average percentages of polysaccharides,lignins,aromatics and aliphatics based on FTIR spectroscopy were 79.89%,0.94%,18.87%and 0.29%,***,the percentage of polysaccharides exhibited an increasing pattern across the forest successional series except for the sudden decreasing in the mixed forest,while the proportions of lignins,aromatics and aliphatics exhibited a decreasing pattern across the forest successional series except for the sudden increasing in the mixed ***,the humification indices(HIs)were highest in the mixed forest compared to the other four successional stages,which means that the SOC quality in mixed forest was worse than other successional *** addition,the SOC stock,recalcitrant fractions and HIs decreased with increasing soil depth,while the polysaccharides exhibited an increasing *** findings demonstrate that the mixed forest had higher SOC stock and worse SOC quality than other successional *** high proportion of SOC stock(66%at depth of 20-100 cm)and better SOC quality(lower HIs)indicate that deep s

关键词： Forest successional series Soil organic cubon stock molecular composition Humification indices Soil organic carbon quality

Variation in Bombyx mori immune response against fungal pathogen Beauveria bassiana with variability in cell wallβ-1,3-glucan

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Insect Science 2024年第1期31卷 211-224页

作者： Yulong Wang Zhen Liu Xuebing Yin Shihong Liu Kai Wang Rongjie Wan Haoran Chen Xinyang Li Bo Huang Anhui Provincial key laboratory of Microbial Pest Control Anhui Agricultural UniversityHefeiChina

Entomopathogenic fungi are protected by a cell wall with dynamic structure for adapting to various environmental conditions.β-1,3-Glucan recognition proteins activate the innate immune system of insects by recognizing surface molecules of ***,the associations between pathogenicity and the different components of entomopathogenic fungal cell walls remain *** Beauveria bassiana strains were selected that have significantly differing virulence against Bombyx *** molecular mechanisms underlying the immune response in *** were investigated using RNA sequencing,which revealed differences in the immune response to different *** strains at 12 h *** assays revealed thatβ-1,3-glucan content had an opposite trend to that of fungal virulence.β-1,3-Glucan injection upregulated BmβGRP4 expression and significantly reduced the virulence of the high-virulence strain but not that of the medium-virulence or low-virulence ***βGRP4 silencing in *** with RNA interference resulted in the opposite virulence pattern,indicating that the virulence of *** was affected by the cell walls’content ofβ-1,3-glucan,which could be recognized by Bmβ***,interference with the gene CnA(calcineurin catalytic A subunit)involved inβ-1,3-glucan synthesis eliminated differences in virulence between *** *** results indicate that strains of a single species of pathogenic fungi that have differing cell wall components are recognized differently by the innate immune system of ***.

关键词： ombyx mori BmβGRP4 innate immunity insect fungal pathogen virulence

Application of controlled-release urea increases maize N uptake,environmental benefits and economic returns via optimizing temporal and spatial distributions of soil mineral N

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Pedosphere 2024年第1期34卷 222-235页

作者： Mingxue SUN Juan LI Lili ZHANG Xiaomeng SU Ning LIU Xiaori HAN Songjiang WU Zhentao SUN Xiangdong YANG Institute of Agricultural Resources and Regional Planning Chinese Academy of Agricultural Sciences/State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China/Key Laboratory of Plant Nutrition and FertilizerMinistry of Agriculture and Rural AffairsBeijing 100081China Agricultural Development Service Center of Zhuanghe Zhuanghe 116499China Agricultural Technology Extension Center Wafangdian 116300China College of Land and Environment Shenyang Agricultural UniversityShenyang 100866China

The creation of controlled-release urea (CRU) is a potent substitute for conventional fertilizers in order to preserve the availability of nitrogen (N) in soil,prevent environmental pollution,and move toward green *** main objectives of this study were to assess the impacts of CRU’s full application on maize production and to clarify the connection between the nutrient release pattern of CRU and maize nutrient *** order to learn more about the effects of CRU application on maize yields,N uptake,mineral N (N_(min)) dynamics,N balance in soil-crop systems,and economic returns,a series of field experiments were carried out in 2018–2020 in Dalian City,Liaoning Province,*** were 4 different treatments in the experiments:no N fertilizer input (control,CK);application of common urea at 210 kg ha^(-1)(U),the ideal fertilization management level for the study site;application of polyurethane-coated urea at the same N input rate as U (PCU);and application of PCU at a 20% reduction in N input rate (0.8PCU).Our findings showed that using CRU (i.e.,PCU and 0.8 PCU) may considerably increase maize N absorption,maintain maize yields,and increase N use efficiency (NUE) compared to *** grain yield showed considerable positive correlations with total N uptake in leaf in U and 0.8 PCU,but negative correlations with that in PCU,indicating that PCU caused excessive maize absorption while 0.8 PCU could achieve a better yield response to N ***,PCU was able to maintain N fertilizer in the soil profile 0–20 cm away from the fertilization point,and higher N_(min)content was observed in the 0–20 cm soil layer at various growth stages,particularly at the middle and late growing stages,optimizing the temporal and spatial distributions of N_(min).Additionally,compared to that in U,the apparent N loss rate in PCU was reduced by 36.2%,and applying CRU (PCU and 0.8 PCU) increased net profit by 8.5% to 15.2% with less labor and fertilization *** was co

关键词： apparent N loss fertilization management green agriculture maize yield N balance N use efficiency

Endorepellin和neurexin互作促进神经上皮细胞自噬并维持正常神经管发育

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Science Bulletin 2024年第14期69卷 2260-2272页

作者：卢磊白梅竹郑煜芳王修坤陈仲中彭瑞 Richard H.Finnell 赵同金李承涛吴波雷云平李劲松王红艳 Shanghai key laboratory of Metabolic Remodeling and Health Institute of Metabolism and Integrative BiologyFudan UniversityShanghai 200438China Obstetrics&Gynecology Hospital State Key Laboratory of Genetic EngineeringFudan UniversityShanghai 200032China key laboratory of Multi-Cell Systems Shanghai Key Laboratory of Molecular AndrologyCAS Center for Excellence in Molecular Cell ScienceShanghai Institute of Biochemistry and Cell BiologyChinese Academy of SciencesShanghai 200031China Obstetrics&Gynecology Hospital The Institute of Obstetrics and GynecologyFudan UniversityShanghai 200090China Center for Precision environmental Health Department of Molecular and Cellular BiologyBaylor College of MedicineHouston 77031USA Shanghai Medical College Fudan UniversityShanghai 200032China Prenatal Diagnosis Center of Shenzhen Maternity&Child Healthcare Hospital Shenzhen 518028China Children’s Hospital Fudan UniversityShanghai 201102China

Heparan sulfate proteoglycan 2(HSPG2)gene encodes the matrix protein Perlecan,and genetic inactivation of this gene creates mice that are embryonic lethal with severe neural tube defects(NTDs).We discovered rare genetic variants of HSPG2 in 10%cases compared to only 4%in controls among a cohort of 369 ***,a peptide cleaved from the domain V of Perlecan,is known to promote angiogenesis and autophagy in endothelial *** roles of enderepellin in neurodevelopment remain unclear so *** study revealed that endorepellin can migrate to the neuroepithelial cells and then be recognized and bind with the neuroepithelia receptor neurexin in *** the endocytic pathway,the interaction of endorepellin and neurexin physiologically triggers autophagy and appropriately modulates the differentiation of neural stem cells into neurons as a blocker,which is necessary for normal neural tube *** created knock-in(KI)mouse models with human-derived HSPG2 variants,using sperm-like stem cells that had been genetically edited by CRISPR/*** realized that any HSPG2 variants that affected the function of endorepellin were considered pathogenic causal variants for human NTDs given that the severe NTD phenotypes exhibited by these KI embryos occurred in a significantly higher response frequency compared to wildtype *** study provides a paradigm for effectively confirming pathogenic mutations in other genetic ***,we demonstrated that using autophagy inhibitors at a cellular level can repress neuronal ***,autophagy agonists may prevent NTDs resulting from failed autophagy maintenance and neuronal over-differentiation caused by deleterious endorepellin variants.

关键词： Neural tube defects Androgenetic haploid embryonic stem cells Basement membrane Neural stem cell Autophagy