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Transcriptome and proteome analysis reveals the characteristics of carbon metabolism in the mycelial development of Gomphus purpuraceus

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Food Science and Human Wellness 2024年

作者： Yangyang Geng Shixin Zhang Yana Liu Likang Qin School of Liquor and Food Engineering guizhou University guizhou institute of Walnut Key Laboratory of Plant Resource co.servation and Germplasm Innovation in Mountainous Region (Ministry of Education) co.lege of Life Sciences/institute of Agro-bioengineering guizhou University guizhou Academy of Forestry guizhou industrial technology research institute of rare edible and medicinal fungi co. Ltd

Gomphus purpuraceus is an ancient wild edible mushroom. However， the niche and lignocellulose degradation system of G. purpuraceus have remained cryptic. In the current study， transcriptome and proteome sequencing of G. purpuraceus in four mediums was performed. A total of 3489 differentially expressed genes (DEGs) and 891 differentially expressed proteins (DEPs) were screened out. For the lignocellulose degradation system， a total of 61 expressed genes were annotated， including 19 genes enco.ing cellulase， 8 genes enco.ing hemicellulase， 5 genes enco.ing pectinase， 22 genes enco.ing lignin oxidase， and 7 lignin degrading auxiliary enzyme. From two-omics， morphology， and enzyme activities， we speculated that G. purpuraceus might have a limited capacity to degrade polysaccharides (starch and lignocellulose). In addition， trace amount of fumonisins (FB1 and FB2) were found in the G. purpuraceus. These results provided a new perspective for understanding the key pathways and hub genes involved in carbon metabolism of G. purpuraceus development.

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Screening of Matrix Formulas of edible Fungus Mycelia Cultured with Bamboo Sawdust

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Meteorological and Environmental research 2022年第3期13卷 11-13,18页

作者： Ling TANG Chengxing DU Qian ZENG Qinyu ZHANG Bo CHEN Xu CHEN Senlin ZHU institute of Soil and Fertilizer Guizhou Academy of Agricultural ScienceGuizhou 550006China guizhou Biotechnology research and Development Base co. Ltd.Guiyang 551400China School of Basic Medicine Guizhou University of Traditional Chinese MedicineGuiyang 550006China

In order to expand the sources of raw materials for edible fungus cultivation, reduce the use of wood, and realize the harmless treatment and efficient utilization of bamboo sawdust, bamboo sawdust was used to partially replace the broad-leaved wood sawdust in the co.ventional formula, and the growth of Ganoderma lucidum and Stropharia rugosoannulata mycelia in a large test tube in different matrix formulas was studied. The results show that the mycelia of the two edible fungi co.ld grow normally in the matrices with bamboo sawdust;the growth of the mycelia in various formulas was different, and the performances of different strains of the same species were also different. co.pared with the co.ventional formula, the suitable substitution amount of bamboo sawdust for the G. lucidum strains was 30%-45%, and that for S. rugosoannulata strains was 16%-32%.

关键词： Bamboo sawdust Ganoderma lucidum Stropharia rugosoannulata Mycelium culture Matrix formula

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The numbers of fungi:co.tributions from traditional taxonomic studies and challenges of metabarco.ing

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Fungal Diversity 2022年第3期114卷 327-386页

作者： Chayanard Phukhamsakda Rolf Henrik Nilsson Chitrabhanu S.Bhunjun Antonio Roberto Gomes de Farias Ya-Ru Sun Subodini N.Wijesinghe Mubashar Raza Dan-Feng Bao Li Lu Saowaluck Tibpromma Wei Dong Danushka S.Tennakoon Xing-Guo Tian Yin-Ru Xiong Samantha C.Karunarathna Lei Cai Zong-Long Luo Yong Wang Ishara S.Manawasinghe Erio Camporesi Paul M.Kirk Itthayakorn Promputtha Chang-Hsin Kuo Hong-Yan Su Mingkwan Doilom Yu Li Yong-Ping Fu Kevin D.Hyde Engineering research Center of Chinese Ministry of Education for edible and medicinal fungi Jilin Agricultural UniversityChangchun 130118JilinPeople’s Republic of China co.lege of Plant Protection Jilin Agricultural UniversityChangchun 130118JilinPeople’s Republic of China Gothenburg Global Biodiversity Centre 40530 GothenburgSweden Department of Biological and Environmental Sciences University of GothenburgBox 46140530 GothenburgSweden Center of Excellence in Fungal research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Department of Plant Pathology College of AgricultureGuizhou UniversityGuiyang 550025GuizhouPeople’s Republic of China State Key Laboratory of Myco.ogy Institute of MicrobiologyChinese Academy of SciencesBeijing 100101People’s Republic of China co.lege of Agriculture and Biological Sciences Dali UniversityDali 671003YunnanPeople’s Republic of China Department of Entomology and Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50200Thailand Centre for Mountain Futures Kunming Institute of BotanyKunming 650201YunnanPeople’s Republic of China Center for Yunnan Plateau Biological Resources Protection and Utilization College of Biological Resource and Food EngineeringQujing Normal UniversityQujing 655011YunnanPeople’s Republic of China Innovative institute for Plant Health Zhongkai University of Agriculture and EngineeringGuangzhou 510225People’s Republic of China Department of Plant Medicine National Chiayi University300 Syuefu RoadChiayi City 60004Taiwan School of Food and Pharmaceutical Engineering Guizhou Institute of TechnologyGuiyang 550003People’s Republic of China CAS Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201People’s Republic of China A.M.B.Gruppo Micologico Forlivese“Antonio Cicognani”Via Roma 18ForlìItaly A.M.B Circolo Micologico“Giovanni Carini”C.P.314 BresciaItaly

The global diversity of fungi has been estimated using several different *** is somewhere between 2–11 million estimated species,but the number of formally described taxa is around 150,000,a tiny fraction of the *** this paper,we examine 12 asco.ycete genera as case studies to establish trends in fungal species descriptions,and introduce new species in each *** highlight the importance of traditional morpho-molecular methods in publishing new species,we introduce novel taxa in 12 genera that are co.sidered to have low species *** discuss whether the species are likely to be rare or due to a lack of extensive sampling and *** genera are Apiospora,Bambusico.a,Beltrania,Capronia,Distoseptispora,Endocalyx,Neocatenulostroma,Neodeightonia,Paraco.iothyrium,Peroneutypa,Phaeoacremonium and *** discuss host-specificity in selected genera and co.pare the number of species epithets in each genus with the number of ITS(barco.e)sequences deposited in GenBank and *** furthermore discuss the relationship between the divergence times of these genera with those of their *** hypothesize whether there might be more species in these genera and discuss hosts and habitats that should be investigated for novel species disco.ery.

关键词： 12 new taxa Asco.yco.a Fungal diversity Fungal numbers High-throughput sequencing Host-specificity

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Fungal diversity notes 929-1035:taxonomic and phylogenetic co.tributions on genera and species of fungi

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Fungal Diversity 2019年第2期95卷 1-273页

作者： Rungtiwa Phookamsak Kevin D.Hyde Rajesh Jeewon D.Jayarama Bhat E.B.Gareth Jones Sajeewa S.N.Maharachchikumbura Olivier Raspe Samantha C.Karunarathna Dhanushka N.Wanasinghe Sinang Hongsanan Mingkwan Doilom Danushka S.Tennakoon Alexandre R.Machado Andre L.Firmino Aniket Ghosh Anuruddha Karunarathna Armin Mesic Arun Kumar Dutta Benjarong Thongbai Bandarupalli Devadatha Chada Norphanphoun Chanokned Senwanna Deping Wei Dhandevi Pem Frank Kwekucher Ackah Gen-Nuo Wang Hong-Bo Jiang Hugo Madrid Hyang Burm Lee Ishani D.Goonasekara Ishara S.Manawasinghe Ivana Kusan Josep Cano Josepa Gene Junfu Li Kanad Das Krishnendu Acharya K.N.Anil Raj K.P.Deepna Latha K.W.Thilini Chethana Mao-Qiang He Margarita Duenas Margita Jadan Maria P.Martin Milan C.Samarakoon Monika C.Dayarathne Mubashar Raza Myung Soo Park M.Teresa Telleria Napalai Chaiwan Neven Matocec Nimali Ide Silva Olinto L.Pereira Paras Nath Singh Patinjareveettil Manimohan Priyanka Uniyal Qiu-Ju Shang Rajendra P.Bhatt Rekhani H.Perera Renato Lucio Mendes Alvarenga Sandra Nogal-Prata Sanjay K.Singh Santhiti Vadthanarat Seung-Yoon Oh Shi-Ke Huang Shiwali Rana Sirinapa Konta Soumitra Paloi Subashini C.Jayasiri Sun Jeong Jeon Tahir Mehmood Tatiana Baptista Gibertoni Thuong T.T.Nguyen Upendra Singh Vinodhini Thiyagaraja V.Venkateswara Sarma Wei Dong Xian-Dong Yu Yong-Zhong Lu Young Woon Lim Yun Chen Zdenko Tkalcec Zhi-Feng Zhang Zong-Long Luo Dinushani A.Daranagama Kasun M.Thambugala Saowaluck Tibpromma Erio Camporesi Timur S.Bulgakov Asha J.Dissanayake Indunil C.Senanayake Dong Qin Dai Li-Zhou Tang Sehroon Khan Huang Zhang Itthayakorn Promputtha Lei Cai Putarak Chomnunti Rui-Lin Zhao Saisamorn Lumyong Saranyaphat Boonmee Ting-Chi Wen Peter E.Mortimer Jianchu Xu Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanPeople’s Republic of China institute of Animal Science State Key Laboratory of AnimalNutritionChinese Academy of Agricultural SciencesBeijing 100193People’s Republic of China Center of Excellence in Fungal research Mae Fah Luang UniversityChiang Rai 57100Thailand World Agroforestry Centre East and Central AsiaKunming 650201YunnanPeople’s Republic of China Mushroom research Foundation 128 M.3 Ban Pa Deng T.Pa PaeA.Mae TaengChiang Rai 50150Thailand Department of Biology Faculty of ScienceChiang Mai UniversityChiang Mai 50200Thailand Department of Health Sciences Faculty of ScienceUniversity of MauritiusReduitMauritius No.128/1-J Co-Op Azad Housing SocietyCurcaGoa VelhaIndia Department of Crop Sciences College of Agricultural and Marine SciencesSultan Qaboos UniversityPO Box 8123 Al KhoudOman Botanic Garden Meise Nieuwelaan 381860 MeiseBelgium Federation Wallonie-Bruxelles Service general de l’Enseignement universitaire et de la Recherche scientifiqueRue A.Lavallee 11080 BrusselsBelgium Shenzhen Key Laboratory of Microbial Genetic Engineering College of Life Science and OceanographyShenzhen University3688Nanhai AvenueNanshanShenzhen 518060People’s Republic of China Department of Plant Medicine National Chiayi University300 Syuefu RoadChiayi City 60004Taiwan Departamento de Mico.ogia Universidade Federal de PernambucoRecifePernambucoBrazil Instituto de Ciencias Agrarias Universidade Federal de UberlandiaMonte CarmeloMinas GeraisBrazil Department of Botany&Microbiology H.N.B.Garhwal UniversitySrinagarGarhwal 246174UttarakhandIndia Department of Entomology and Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50200Thailand Ruder Boskovic institute Bijenicka cesta 5410000 ZagrebCroatia Molecular and Applied Myco.ogy and Plant Pathology Laboratory Department of BotanyUniversity of CalcuttaKolkataWest Bengal

This article is the ninth in the series of Fungal Diversity Notes,where 107 taxa distributed in three phyla,nine classes,31 orders and 57 families are described and *** described in the present study include 12 new genera,74 new species,three new co.binations,two reference specimens,a re-circumscription of the epitype,and 15 reco.ds of sexualasexual morph co.nections,new hosts and new geographical *** new genera co.prise Brunneofusispora,Brunneomurispora,Liua,Lonicerico.a,Neoeutypella,Paratrimmatostroma,Parazalerion,Proliferophorum,Pseudoastrosphaeriellopsis,Septomelanco.iella,Velebitea and ***-four new species are Agaricus memnonius,***,Aleurodiscus patagonicus,Amanita flavoalba,***,Amphisphaeria mangrovei,Baorangia major,Bartalinia kunmingensis,Brunneofusispora sinensis,Brunneomurispora lonicerae,Capronia camelliaeyunnanensis,Clavulina thindii,co.iochaeta simbalensis,co.larium thailandense,co.rinus trigonosporus,Liua muriformis,Cyphellophora filicis,Cytospora ulmico.a,Dacrymyces invisibilis,Dictyocheirospora metroxylonis,Distoseptispora thysanolaenae,Emericellopsis koreana,Galiico.a baoshanensis,Hygrocybe lucida,Hypoxylon teeravasati,Hyweljonesia indica,Keissleriella caraganae,Lactarius olivaceopallidus,Lactifluus midnapurensis,Lembosia brigadeirensis,Leptosphaeria urticae,Lonicerico.a hyaloseptispora,Lophiotrema mucilaginosis,Marasmiellus bico.oripes,Marasmius indojasminodorus,Micropeltis phetchaburiensis,Muco. orantomantidis,Murilentithecium lonicerae,Neobambusico.a brunnea,Neoeutypella baoshanensis,Neoroussoella heveae,Neosetophoma lonicerae,Ophiobolus malleolus,Parabambusico.a thysanolaenae,Paratrimmatostroma kunmingensis,Parazalerion indica,Penicillium dokdoense,Peroneutypa mangrovei,Phaeosphaeria cycadis,Phanerochaete australosanguinea,Plectosphaerella kunmingensis,Plenodomus artemisiae,***,Proliferophorum thailandicum,Pseudoastrosphaeriellopsis kaveriana,Pseudohelico.yces menglunicu

关键词： 86 new taxa Agarico.ycetes Asco.yco.a Basidiomyco.a Dacrymycetes Dothideomycetes Eurotiomycetes Lecanoromycetes Leotiomycetes Muco.omycetes Muco.omyco.a Pezizomycetes Sordariomycetes Taxonomy

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