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China Medical Abstracts(Internal Medicine) 2022年第2期39卷 82-83页

作者： ZHANG Ran Natl HIV Refer lab Natl AIDS/STD Contr&Prev CenterChin Dis Contr&Prev CenterBeijing 102206

Objective To investigate the distribution of HIV-1genetic subtypes and pretreatment drug resistance(PDR)among men who have sex with men(MSM) from 19 cities of 6 provinces in *** From April to November 2019, 574 plasma samples of ART-naive HIV-1 infected MSM were collected from 19 cities in Hebei,Shandong, Jiangsu, Zhejiang, Fujian, and Guangdong provinces, total ribonucleic acid (RNA) was extracted and amplified the HIV-1 pol gene region by nested polymerase chain reaction(PCR) after reverse transcription.

关键词： infected drug resistance

Advances in the study of gastric organoids as disease models

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World Journal of Gastrointestinal Oncology 2024年第5期16卷 1725-1736页

作者： Yi-Yang Liu De-Kun Wu Ji-Bing Chen You-Ming Tang Feng Jiang Graduate School Guangxi University of Chinese MedicineNanning 530011Guangxi Zhuang Autonomous RegionChina Teaching Experiment and Training Center Guangxi University of Chinese MedicineNanning 530011Guangxi Zhuang Autonomous RegionChina Central laboratory Ruikang Hospital Affiliated to Guangxi University of Traditional Chinese MedicineNanning 530011Guangxi Zhuang Autonomous RegionChina Department of Digestive Disease Ruikang Hospital Affiliated to Guangxi University of Traditional Chinese MedicineNanning 530011Guangxi Zhuang Autonomous RegionChina aids Research Center Ruikang Hospital Affiliated to Guangxi University of Traditional Chinese MedicineNanning 530011Guangxi Zhuang Autonomous RegionChina

Gastric organoids are models created in the laboratory using stem cells and sophisticated three-dimensional cell culture *** models have shown great promise in providing valuable insights into gastric physiology and advanced disease *** review comprehensively summarizes and analyzes the research advances in culture methods and techniques for adult stem cells and induced pluripotent stem cell-derived organoids,and patient-derived *** potential value of gastric organoids in studying the pathogenesis of stomach-related diseases and facilitating drug screening is initially *** construction of gastric organoids involves several key steps,including cell extraction and culture,three-dimensional structure formation,and functional *** the structure and function of the human stomach by disease modeling with gastric organoids provides a platform to study the mechanism of gastric cancer induction by Helicobacter *** addition,in drug screening and development,gastric organoids can be used as a key tool to evaluate drug efficacy and toxicity in preclinical *** can also be used for precision medicine according to the specific conditions of patients with gastric cancer,to assess drug resistance,and to predict the possibility of adverse ***,despite the impressive progress in the field of gastric organoids,there are still many unknowns that need to be addressed,especially in the field of regenerative ***,the reproducibility and consistency of organoid cultures are major challenges that must be *** challenges have had a significant impact on the development of gastric ***,as technology continues to advance,we can foresee more comprehensive research in the construction of gastric *** research will provide better solutions for the treatment of stomach-related diseases and personalized medicine.

关键词： Organoids Stomach neoplasms Helicobacter pylori Drug evaluation Preclinical Precision

Genome-wide development of interspecific microsatellite markers for Saccharum officinarum and Saccharum spontaneum

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Journal of Integrative Agriculture 2022年第11期21卷 3230-3244页

作者： LIU Lei WANG Heng-bo LI Yi-han CHEN Shu-qi WU Ming-xing DOU Mei-jie QI Yi-yin FANG Jing-ping ZHANG Ji-sen Center for Genomics and Biotechnology Fujian Provincial Key Laboratory of Haixia Applied Plant Systems BiologyKey Laboratory of GeneticsFujian Agriculture and Forestry UniversityFuzhouFujian 350002P.R.China State key lab for Conservation and Utilization of Subtropical Agro-Biological Resources&guangxi key lab for Sugarcane Biology Guangxi UniversityNanning 530004P.R.China College of Life Sciences Fujian Normal UniversityFuzhou 350007P.R.China

Sugarcane has a large,complex,polyploid genome that has hindered the progress of genomic research and molecular marker-assisted *** user-friendly SSR markers have attracted considerable attention owing to their ideal genetic ***,these markers were not characterized and developed at the genome-wide scale due to the previously lacking high-quality chromosome-level assembled sugarcane *** this present study,744305and 361638 candidate SSRs were identified from the genomes of *** and ***,*** verified the reliability of the predicted SSRs by using 1200 interspecific SSR primer pairs to detect polymorphisms among 11 representative accessions of Saccharum,including ***,***,***,and modern sugarcane *** results showed that 660 SSR markers displayed interspecific polymorphisms among these ***,100 SSRs were randomly selected to detect the genetic diversity for 39 representative Saccharum accessions.A total of 320 alleles were generated using 100 polymorphic primers,with each marker ranging from two to seven *** genetic diversity analysis revealed that these accessions were distributed in four main groups,including group I(14 *** accessions),group II(two *** accessions),group III(18 modern sugarcane hybrid accessions),and group IV(five *** accessions).Experimental verification supported the reliability of the SSR markers based on genome-wide *** development of a large number of SSR markers based on wet experiments is valuable for genetic studies,including genetic linkage maps,comparative genome analysis,genome-wide association studies,and marker-assisted selection in Saccharum.

关键词： Saccharum genome-wide simple repeat sequences(SSR) microsatellite molecular markers

A multiple sensitive attributes data publishing method with guaranteed information utility

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CAAI Transactions on Intelligence Technology 2023年第2期8卷 288-296页

作者： Haibin Zhu Tong Yi Songtao Shang Minyong Shi Zhucheng Li Wenqian Shang Department of Computer Science and Mathematics Nipissing UniversityNorth BayOntarioCanada key lab of Education Blockchain and Intelligent Technology Ministry of EducationGuangxi Normal UniversityGuilinChina guangxi key lab of Multi‐Source Information Mining and Security Guangxi Normal UniversityGuilinChina School of Computer and Communication Engineering Zhengzhou University of Light IndustryZhengzhouChina School of Computer Science Communication University of ChinaBeijingChina Business College Beijing Union UniversityBeijingChina

Data publishing methods can provide available information for analysis while preserving *** multiple sensitive attributes data publishing,which preserves the relationship between sensitive attributes,may keep many records from being grouped and bring in a high record suppression *** category of multiple sensitive attributes data publishing,which reduces the possibility of record suppression by breaking the relationship between sensitive attributes,cannot provide the sensitive attributes association for ***,the existing multiple sensitive attributes data publishing fails to fully account for the comprehensive information *** acquire a guaranteed information utility,this article defines comprehensive information loss that considers both the suppression of records and the relationship between sensitive attributes.A heuristic method is leveraged to discover the optimal anonymity scheme that has the lowest comprehensive information *** experimental results verify the practice of the proposed data publishing method with multiple sensitive *** proposed method can guarantee information utility when compared with previous ones.

关键词： data analysis data privacy security of data

Hippocampal Segmentation in Brain MRI Images Using Machine Learning Methods: A Survey

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Chinese Journal of Electronics 2021年第5期30卷 793-814页

作者： PAN Yi LIU Jin TIAN Xu LAN Wei GUO Rui Shenzhen Institute of Advanced Technology Chinese Academy of Sciences Hunan Provincial key lab on Bioinformatics School of Computer Science and EngineeringCentral South University School of Computer Electronics and Information Guangxi University

The hippocampus is closely related to many brain diseases, such as Alzheimer’s disease. Accurate measurement of the hippocampus is helpful for clinicians in identifying lesions and then diagnosing and treating the related brain diseases. Therefore, accurate segmentation of the hippocampus is of vital significance for the indepth study of many brain diseases. However, the accurate measurement of the hippocampus depends on its accurate segmentation, and hippocampal segmentation has always been a challenging problem due to the small size,irregular shape, and fuzzy boundaries with surrounding tissues of the hippocampus. With the development of machine learning, many innovative methods have been proposed to segment the hippocampus. The purpose of this survey is to provide a comprehensive overview of hippocampal segmentation in brain MRI images using machine learning methods. First, a brief introduction to hippocampal segmentation in brain MRI images is given. Then, common evaluation metrics of hippocampal segmentation are introduced. Next, brain hippocampal segmentation methods based on traditional machine learning and deep learning are described. Subsequently,some common open datasets and toolkits applied to brain hippocampal segmentation are presented. Finally,objective conclusions regarding hippocampal segmentation in brain MRI images using machine learning methods are drawn, and future developments and trends are identified for brain hippocampal segmentation.

关键词： biomedical MRI brain image segmentation machine learning methods brain hippocampal segmentation methods medical image processing neurophysiology related brain diseases diseases learning (artificial intelligence) hippocampus brain MRI images

Epigenetic changes in the regulation of carotenoid metabolism during honeysuckle flower development

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Horticultural Plant Journal 2023年第3期9卷 577-588页

作者： Hang Yu Na Cui Kun Guo Wen Xu Haifeng Wang State key laboratory for Conservation and Utilization of Subtropical Agro-Bioresources Guangxi Key Lab of Sugarcane BiologyCollege of AgricultureGuangxi UniversityNanningGuangxi 530005China Institute of Medicinal Plant Development Chinese Academy of Medical SciencesPeking Union Medical CollegeBeijing 100193China Innovation and Transformation Center of Science and Technology College of PharmacyFujian University of Traditional Chinese MedicineFuzhouFujian 350122China

Flower development is one of the most vital pathways in plant development, during which the epigenetic regulation of gene expression is essential. DNA methylation, the most conserved epigenetic modification, participates in gene expression regulation and transposable element silencing. Honeysuckle(Lonicera japonica) is an important medicinal plant renowned for its colorful and fragrant flowers. Honeysuckle flowers change color from white to gold as a result of carotenoid accumulation during development. However, the role of DNA methylation in flower color changes is not well understood in L. japonica. Here, we performed whole-genome bisulfite sequencing and transcriptome sequencing during flowering development in honeysuckle. The results showed that a decrease in the levels of genome-wide average DNA methylation during flower development and changes in DNA methylation were associated with the expression of demethylase genes. Moreover, many genes involved in carotenoid biosynthesis and degradation, such as Lj PSY1, LjPDS1, LjLCYE, and LjCCD4, have altered expression levels because of hypomethylation, indicating that DNA methylation plays an important role in flower color changes in honeysuckle. Taken together, our data provide epigenetic insights into flower development and color change in honeysuckles.

关键词： Lonicera japonica DNA methylation Epigenetic regulation Gene expression Carotenoid metabolism

Catalytic recycling of plastics into value-added products

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Nano Research 2024年第11期17卷 9428-9445页

作者： Tianyu Wei Pengcheng Zhou Wenxian Liu Xijun Liu Tairong Kuang Functional Polymers and Advanced Materials (FPAM) lab Zhejiang Key Laboratory of Plastic Modification and Processing Technology College of Materials Science and Engineering Zhejiang University of Technology Hangzhou 310014 China State key laboratory of Featured Metal Materials and Life-cycle Safety for Composite Structures Guangxi Key Laboratory of Processing for Nonferrous Metals and Featured Materials MOE Key Laboratory of New Processing Technology for Nonferrous Metals and Materials School of Resources Environment and Materials Guangxi University Nanning 530004 China

The overuse and ineffective management of plastics have led to significant environmental pollution. Catalytic upcycling into value-added chemicals has emerged as a promising solution. This review provides a comprehensive overview of recent advances in catalytic upcycling, focusing on the cleavage of chemical bonds such as carbon-carbon (C-C), carbon-oxygen (C-O), and carbon-hydrogen (C-H) in plastics. It systematically discusses plastics conversion via electrocatalysis, thermal catalysis, and photocatalysis. Additionally, it explores the conversion of plastics into value-added chemicals and functional polymers. The review also addresses the challenges in this field and aims to offer insights for developing sustainable and effective plastics upcycling technologies.

关键词： plastics recycling catalysis chemical recycling value-added chemicals functional polymers

Transcriptional profiling reveals multiple defense responses in downy mildew-resistant transgenic grapevine expressing a TIR-NBS-LRR gene located at the MrRUN1/MrRPV1 locus

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Horticulture Research 2021年第1期8卷 2215-2226页

作者： Junjie Qu Ian Dry Lulu Liu Zexi Guo Ling Yin guangxi Crop Genetic Improvement and Biotechnology key lab Guangxi Academy of Agricultural SciencesNanning 530007China CSIRO Agriculture&Food Wine Innovation West BuildingLocked Bag 2Glen OsmondSA 5064Australia

Grapevine downy mildew(DM)is a destructive oomycete disease of viticulture ***1 is a typical TIR-NBS-LRR type DM disease resistance gene cloned from the wild North American grapevine species Muscadinia ***,the molecular basis of resistance mediated by MrRPV1 remains poorly *** mildew-susceptible Vitis vinifera *** was transformed with a genomic fragment containing MrRPV1 to produce DM-resistant transgenic Shiraz *** transcriptome analysis was used to compare the transcriptome profiles of the resistant and susceptible genotypes after DM *** modulation during the response to *** infection was more rapid,and more genes were induced in MrRPV1-transgenic Shiraz than in wild-type *** DM-infected MrRPV1-transgenic plants,activation of genes associated with Ca^(2+)release and ROS production was the earliest transcriptional *** analysis of differentially expressed genes revealed that key genes related to multiple phytohormone signaling pathways and secondary metabolism were highly induced during *** network and motif enrichment analysis showed that WRKY and MYB transcription factors strongly coexpress with stilbene synthase(VvSTS)genes during defense against *** in MrRPV1-transgenic *** together,these findings indicate that multiple pathways play important roles in MrRPV1-mediated resistance to downy mildew.

关键词： resistance expressing metabolism

Polyp-Canal Reconstruction Reveals Evolution Toward Complexity in Corals

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Research 2024年第1期2023卷 417-428页

作者： Yixin Li Xin Liao Xin Wang Yuanchao Li Hongwei Zhao Yunpeng Zhao Junyuan Chen Chunpeng He Zuhong Lu State key laboratory of Bioelectronics School of Biological Science and Medical EngineeringSoutheast UniversityNanjing 210096China State key laboratory of Coastal and Offshore Engineering Dalian University of TechnologyDalian 116024China guangxi key lab of Mangrove Conservation and Utilization Guangxi Mangrove Research CenterGuangxi Academy of SciencesBeihai 536000China Hainan Academy of Ocean and Fishery Sciences Haikou 571126China State key laboratory of Marine Resources Utilization in South China Sea Hainan UniversityHaikou 570228China Nanjing Institute of Geology and Palaeontology Chinese Academy of Sciences39 East Beijing RoadNanjing 210008China

Modern scleractinian corals are classified into robust,complex,and basal clades through comparative molecular ***,only few morphological or biological criteria can systematically determine the evolutionary trajectories of these major scleractinian coral ***,we obtained the structural information of 21 scleractinian coral species representing robust and complex clades:High-resolution micro-computed tomography was used to reconstruct the polyp-canal systems in their colonies and to visualize the dynamic polyp growth *** found that the emergence of mesh-like canals may distinguish representatives of complex and robust *** differences in polyp-canal connections suggest distinct evolutionary trajectories among coral species:The formation of the canal network promoted the development of more complex coral structures,and coral polyps within this network formed calices of very similar volume,following precise axial growth *** influence of individual polyps on the coral colony becomes less significant as coral structures become more complex,and coral species with more complicated polyp-canal systems occupied niches more *** work supplements current evolutionary studies on reef-building corals,providing insight for further studies on coral growth patterns.

关键词： Coral representing directions

Role of the globus pallidus in motor and non-motor symptoms of Parkinson's disease

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Neural Regeneration Research 2025年第6期20卷 1628-1643页

作者： Yimiao Jiang Zengxin Qi Huixian Zhu Kangli Shen Ruiqi Liu Chenxin Fang Weiwei Lou Yifan Jiang Wangrui Yuan Xin Cao Liang Chen Qianxing Zhuang Department of Physiology School of MedicineNantong UniversityNantongJiangsu ProvinceChina Department of Neurosurgery Huashan HospitalShanghai Medical CollegeFudan UniversityShanghaiChina National Center for Neurological Disorders ShanghaiChina Shanghai key laboratory of Brain Function Restoration and Neural Regeneration ShanghaiChina State key laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science Institute of Brain ScienceFudan UniversityShanghaiChina

The globus pallidus plays a pivotal role in the basal ganglia circuit. Parkinson's disease is characterized by degeneration of dopamine-producing cells in the substantia nigra, which leads to dopamine deficiency in the brain that subsequently manifests as various motor and non-motor symptoms. This review aims to summarize the involvement of the globus pallidus in both motor and non-motor manifestations of Parkinson's disease. The firing activities of parvalbumin neurons in the medial globus pallidus, including both the firing rate and pattern, exhibit strong correlations with the bradykinesia and rigidity associated with Parkinson's disease. Increased beta oscillations, which are highly correlated with bradykinesia and rigidity, are regulated by the lateral globus pallidus. Furthermore,bradykinesia and rigidity are strongly linked to the loss of dopaminergic projections within the cortical-basal ganglia-thalamocortical loop. Resting tremors are attributed to the transmission of pathological signals from the basal ganglia through the motor cortex to the cerebellum-ventral intermediate nucleus circuit. The cortico–striato–pallidal loop is responsible for mediating pallidi-associated sleep disorders. Medication and deep brain stimulation are the primary therapeutic strategies addressing the globus pallidus in Parkinson's disease. Medication is the primary treatment for motor symptoms in the early stages of Parkinson's disease, while deep brain stimulation has been clinically proven to be effective in alleviating symptoms in patients with advanced Parkinson's disease,particularly for the movement disorders caused by levodopa. Deep brain stimulation targeting the globus pallidus internus can improve motor function in patients with tremordominant and non-tremor-dominant Parkinson's disease, while deep brain stimulation targeting the globus pallidus externus can alter the temporal pattern of neural activity throughout the basal ganglia–thalamus network. Therefore, the comp

关键词： anxiety basal ganglia bradykinesia deep brain stimulation depression globus pallidus externus globus pallidus internus lateral globus pallidus medial globus pallidus neural circuit Parkinson's disease