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Landscape of global urban environmental resistome and its association with local socioeconomic and medical status

Science China(Life Sciences) 2024年第6期67卷 1292-1301页

作者： Jun Wu Yige Hu Michael H Perlin David Danko Jun Lu Manuela Oliveira Johannes Werner Maria M Zambrano Maria A Sierra Olayinka O Osuolale Paweł Łabaj Nicolás Rascovan Nur Hazlin Hazrin-Chong Soojin Jang Haruo Suzuki Marina Nieto-Caballero Bharath Prithiviraj Patrick K H Lee Agnieszka Chmielarczyk Anna Różańska Yongxiang Zhao Lan Wang Christopher E Mason Tieliu Shi Center for Bioinformatics and Computational Biology and the Institute of Biomedical SciencesSchool of Life SciencesEast China Normal UniversityShanghai 200241China department of Biology Program on Disease EvolutionUniversity of LouisvilleLouisville 40292USA Weill Cornell Medicine New York 10065USA The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine New York 10065USA department of Pulmonary Medicine Shanghai Chest HospitalShanghai Jiao Tong UniversityShanghai 200025China i3S-Instituto de Investiga玢o e Inova玢o em Saúde Universidade do PortoPorto 4050-290Portugal Ipatimup-Instituto de Patologia e Imunologia Molecular da universidade do Porto Porto 4200-465Portugal Departamento de Biologia Faculdade de CiênciasUniversidade do PortoPorto 4050-290Portugal High Performance and Cloud Computing Group Zentrum für Datenverarbeitung(ZDV)Eberhard Karls University of TübingenW鋍hterstra遝7672074TübingenGermany Corporación Corpogen Research Center Bogotá110311Colombia Applied Environmental Metagenomics and Infectious Diseases Research(AEMIDR) Department of Biological SciencesElizade UniversityIlara-Mokin 340271Nigeria Maopolska Centre of Biotechnology Jagiellonian UniversityKraków 30-005Poland Aix-Marseille Université Mediterranean Institute of OceanologyUniversitéde ToulonCNRSIRDUM 110Marseille 83041France department of Biological Sciences and Biotechnology Faculty of Science and TechnologyUniversiti Kebangsaan Malaysia43600 UKM BangiSelangor Institut Pasteur Korea Seoul 13488Republic of Korea Faculty of Environment and Information Studies Keio UniversityFujisawaKanagawa 252-0882Japan University of Colorado at Boulder CivilEnvironmental and Architectural DepartmentBoulder 80303USA Brooklyn College of the city University of New York Brooklyn 11210USA School of Energy and Environment City University of Hong KongHong Kong 999077China department of Microbiology Faculty of MedicineJagiellonian UniversityKraków 30-005Poland Biological Targeting Diagnosis and The

Antimicrobial resistance(AMR)poses a critical threat to global health and development,with environmental factors—particularly in urban areas—contributing significantly to the spread of antibiotic resistance genes(ARGs).However,most research to date has been conducted at a local level,leaving significant gaps in our understanding of the global status of antibiotic resistance in urban *** address this issue,we thoroughly analyzed a total of 86,213 ARGs detected within 4,728 metagenome samples,which were collected by the Meta SUB International Consortium involving diverse urban environments in 60 cities of 27 countries,utilizing a deep-learning based *** findings demonstrated the strong geographical specificity of urban environmental resistome,and their correlation with various local socioeconomic and medical *** also identified distinctive evolutionary patterns of ARG-related biosynthetic gene clusters(BGCs)across different countries,and discovered that the urban environment represents a rich source of novel *** study provides a comprehensive overview of the global urban environmental resistome,and fills a significant gap in our knowledge of large-scale urban antibiotic resistome analysis.

关键词： urban environment metagenome antibiotic resistance resistance diversity biosynthetic gene clusters

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Adaptive Fourier Decomposition of the First Three SARS-CoV-2 Infection Waves with Epidemic Intervention—London,UK,2020-2022

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China CDC weekly 2024年第21期6卷 478-486,I0006-I0008页

作者： Zige Liu Guibin Lu Cheokieng Vong Zhiqi Zeng Wei He Zhijie Lin Cuiyun Lin Kaichin Hsieh Zifeng Yang Arlindo L.Oliveira Chitin Hon department of Engineering Science Faculty of Innovation EngineeringMacao University of Science and TechnologyMacao SARChina Queen Ethelburga’s Collegiate Thorpe Underwood EstateYorkUK State Key Laboratory of Respiratory Disease National Clinical Research Center for Respiratory DiseaseGuangzhou Institute of Respiratory HealthThe First Affiliated Hospital of Guangzhou Medical UniversityGuangzhou CityGuangdong ProvinceChina Respiratory Disease AI Laboratory on Epidemic and Medical Big Data Instrument Applications Department of Engineering ScienceFaculty of Innovation EngineeringMacao University of Science and TechnologyMacao SARChina Guangzhou Key Laboratory for Clinical Rapid Diagnosis and Early Warning of Infectious Diseases KingMed School of Laboratory MedicineGuangzhou Medical UniversityGuangzhou CityGuangdong ProvinceChina Faculty of Innovation Engineering School of Computer Science and EngineeringMacao University of Science and TechnologyMacao SARChina University College London UCL Faculty of Engineering SciencesLondonUK Guangzhou Laboratory Guangzhou CityGuangdong ProvinceChina Instituto de Engenharia de Sistemas e Computadores:Investigação e Desenvolvimento em Lisboa LisboaPortugal Instituto Superior Técnico Universidade de LisboaLisboaPortugal

Background:This study provides a detailed analysis of the daily fluctuations in coronavirus disease 2019(COVID-19)case numbers in London from January 31,2020 to February 24,*** primary objective was to enhance understanding of the interactions among government pandemic responses,viral mutations,and the subsequent changes in COVID-19 case ***:We employed the adaptive Fourier decomposition(AFD)method to analyze diurnal changes and further segmented the AFD into novel multi-component groups consisting of one to three *** restructured components were rigorously evaluated using Pearson correlation,and their effectiveness was compared with other signal analysis *** study introduced a novel approach to differentiate individual components across various time-frequency scales using basis decomposition ***:Analysis of London’s daily COVID-19 data using AFD revealed a strong correlation between the“stay at home”directive and high-frequency components during the first epidemic *** indicates the need for sustained implementation of vaccination policies to maintain their ***:The AFD component method provides a comprehensive analysis of the immediate and prolonged impact of governmental policies on the spread of severe acute respiratory syndrome coronavirus 2(SARS-CoV-2).This robust tool has proven invaluable for analyzing COVID-19 pandemic data,offering critical insights that guide the formulation of future preventive and public health strategies.

关键词： offering sustained London

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Postgraduate education among family and community physicians in Brazil:the Trajetórias MFC project

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Family Medicine and Community Health 2020年第3期8卷 1-10页

作者： Leonardo Ferreira Fontenelle Stephani Vogt Rossi Miguel Henrique Moraes de Oliveira Diego JoséBrandão Thiago Dias Sarti Medical School Universidade Vila VelhaVila VelhaBrazil Commission of Medical Residency Universidade Vila VelhaVila VelhaBrazil department of Social Medicine Universidade Federal do Espirito SantoVitoriaBrazil

Objective Our objective was to describe the postgraduate education trajectories of family and community physicians in Brazil,where neither primary healthcare nor family and community medicine is recognised as a knowledge area for the purpose of research and postgraduate education(master’s and PhD degrees).Design An observational,exploratory study,using administrative data.A nationwide list of family and community physicians as of late November 2018 was compiled from multiple *** on the mode of specialisation was obtained from the same sources and were correlated with data on master’s and PhD degrees,obtained from the curricula vitae on the Lattes *** This study was set in *** 6238 family and community physicians(58.3%female),of whom 2795 had earned a specialist certificate(identified from the list of physicians certified by Sociedade Brasileira de Medicina de Família e Comunidade)and 3957 had completed medical residency(identified from SisCNRM,the national information system for medical residency).Results A master’s degree was held by 747(12.0%)family and community physicians,and a PhD by 170(2.7%);most degrees were in collective health(47.0%and 42%,respectively).Men were more likely than women to hold a master’s degree(adjusted odds ratio(aOR)1.24,95%uncertainty interval(UI)1.07-1.45)and even more likely to a hold PhD(aOR 1.86,95%UI 1.35-2.59).Family and community physicians were also less likely to hold a PhD degree if their master’s degree was professional(oriented towards jobs outside academia)instead of academic(aOR 0.15,95%UI 0.05-0.39)or in some area other than collective health or medicine(aOR 0.41,95%UI 0.21-0.78,compared with a master’s degree in collective health).The postgraduate degree was more likely to precede specialisation for family and community physicians specialising through certification(master’s degree 39.9%,PhD 33%)than through medical residency(master’s degree 9.1%,PhD 6%).Conclusion Family and community

关键词： MFC collective education

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The differential genetic signatures related to climatic landscapes for jaguars and pumas on a continental scale

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Integrative Zoology 2021年第1期16卷 2-18页

作者： Marina ZANIN Noa GONZALEZ-BORRAJO Cuauhtémoc CHÁVEZ Yamel RUBIO Bart HARMSEN Claudia KELLER Pablo VILLALVA Ana Carolina SRBEK-ARAUJO Leonora Pires COSTA Francisco PALOMARES Biology department Federal University of MaranhãoSão LuísBrazil Departamento de Biologia de la Conservación Estación Biológica de DoñanaSevillaSpain Departamento de Ciencias Ambientales Universidad Autónoma MetropolitanaMexico CityMexico Escuela de Biologia Universidad Autónoma de SinaloaCuliacánMexico Panthera New YorkUSA Biodiversity Coordination Amazon Research InstituteManausBrazil Biology department Vila Velha UniversityVila VelhaBrazil Biological Sciences department Federal University of Espírito SantoVitóriaBrazil

Modern and paleoclimate changes may have altered species dynamics by shifting species’niche suitability over space and *** analyze whether the current genetic structure and isolation of the two large American felids,jaguar(Panthera onca)and puma(Puma concolor),are mediated by changes in climatic suitability and connection routes over modern and paleoclimatic *** estimate species distribution under 5 climatic landscapes(modern,Holocene,last maximum glaciations[LMG],average suitability,and climatic instability)and correlate them with individuals’genetic isolation through causal modeling on a resemblance *** species exhibit genetic isolation patterns correlated with LMG climatic suitability,suggesting that these areas may have worked as“allele refuges.”However,the jaguar showed higher vulnerability to climate changes,responding to modern climatic suitability and connection routes,whereas the puma showed a continuous and gradual transition of genetic *** differential responsiveness to climate change,both species are subjected to the climatic effects on genetic configuration,which may make them susceptible to future climatic changes,since these are progressing faster and with higher intensity than changes in the ***,the effects of climatic changes should be considered in the design of conservation strategies to ensure evolutionary and demographic processes mediated by gene flow for both species.

关键词： causal modeling climatic landscape ecological niche modeling gene flow linear mixed model

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Unravelling COVID-19 waves in Rio de Janeiro city:Qualitative insights from nonlinear dynamic analysis

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Infectious Disease Modelling 2024年第2期9卷 314-328页

作者： Adriane S.Reis Laurita dos Santos Américo Cunha Jr Thaís C.R.O.Konstantyner Elbert E.N.Macao Institute of Science and Technology Federal University of São PauloSão Josédos CamposSPBrazil Physics Institute University of São PauloSão PauloSPBrazil Scientific and Technological Institute Universidade BrasilSão PauloSPBrazil department of Applied Mathematics Rio de Janeiro State UniversityRio de JaneiroRJBrazil Paulista School of Medicine Federal University of São PauloSão PauloSPBrazil

Since the COVID-19 pandemic was first reported in 2019,it has rapidly spread around the *** countries implemented several measures to try to control the virus *** healthcare system and consequently the general quality of life population in the cities have all been significantly impacted by the Coronavirus *** different waves of contagious were responsible for the increase in the number of cases that,unfortunately,many times lead to *** this paper,we aim to characterize the dynamics of the six waves of cases and deaths caused by COVID-19 in Rio de Janeiro city using techniques such as the Poincaréplot,approximate entropy,second-order difference plot,and central tendency *** results reveal that by examining the structure and patterns of the time series,using a set of non-linear techniques we can gain a better understanding of the role of multiple waves of COVID-19,also,we can identify underlying dynamics of disease spreading and extract meaningful information about the dynamical behavior of epidemiological time *** findings can help to closely approximate the dynamics of virus spread and obtain a correlation between the different stages of the disease,allowing us to identify and categorize the stages due to different virus variants that are reflected in the time series.

关键词： COVID-19 Nonlinear analysis Poincaréplot Central tendency measure

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Native and exotic seed dispersal by the stone marten(Martes foina):implications for the regeneration of a relict climactic forest in central Portugal

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Integrative Zoology 2019年第3期14卷 280-292页

作者： Lúcia PEREIRA Ana VASQUES Paula MAIA Maria João RAMOS PEREIRA Carlos FONSECA Milena MATOS CESAM-Centre for Environmental and Marine Studies-Wildlife Research Unit Department of BiologyUniversity of AveiroAveiroPortugal CESAM-Centre for Environmental and Marine Studies-department of Environment and Planning University of AveiroAveiroPortugal Erasmus University College Life Sciences DepartmentRotterdamthe Netherlands Institute of Biosciences PPGBANDepartment of ZoologyUniversidade Federal do Rio Grande do SulBrazil BioLiving Association FrossosAlbergaria-a-VelhaPortugal

The stone marten(Martes foina)is a carnivorous mammal that often consumes fleshy fruits,thus potentially promoting seed *** present study was developed in Bussaco National Forest,central Portugal,and aimed to assess the potential role of the stone marten in dispersing native and exotic plants in different forest landscape *** from stone marten scats and fleshy fruits were collected monthly and were thereafter identified and sowed in a nursery,following a randomized experimental *** emergence was monitored *** linear models were used to test for differences in time and success of emergence between seeds from scats and fruits of 3 native species(Rubus ulmifolius,Arbutus unedo and Celtis australis)and 1 exotic plant species with invasive behavior(Prunus laurocerasus).Fruit consumption by the stone martens significantly increased and accelerated the germination of the native *** but had no effect on the other 2 native species or on the invasive *** suggested that stone martens contribute to gene flow and forest regeneration by dispersing native plant ***,although the germination was not enhanced in the invasive species,the preference of stone martens for these fruits may potentially contribute to the proliferation of *** study represents a contribution to better understanding the fauna and flora interactions,enabling for a more conscious and effective decision-making in forest management.

关键词： germination invasive species Martes foina Prunus laurocerasus relict climactic forest

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Relieving a Tropical Vernacular Habitat Typology as a Source for Contemporary Social Housing Designs

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Journal of Civil Engineering and architecture 2018年第7期12卷 493-501页

作者： Marcelo Adolfo Jiménez Leopoldo Eurico Goncalves Bastos PROARQ-FAU/universidade Federal do Rio de Janeiro Cidade Universitária 21941-901 Rio de Janeiro Brazil Universidad Católica de Alto Paraná Paraguay Mestrado em Arquitetura e Cidade Universidade Vila Velha ES Brazil

This work presents an analysis for the rural vernacular dwelling （Culata Yovai）, sited in the South America Guarani region, basin of Paraguay and Paraná rivers. Outdoor climate has conducted man to build along the time a habitat climatic responsive. Nowadays, studies in progress try to show how this vernacular typology can support new low-income house designs. The intent is to guarantee for new projects the socio-cultural image that people, coming from countryside to live in city outskirts, are accostumed. Also, to provide material improvements and functional adequation for a quality and healthiness. Natural ventilation is the main bioclimatic strategy during summer for thermal comfort, which influences the house characteristics. This is proven by calculation, and simulation with the CFX-ANSYS software. Thus, the analysis performed shows the real possibity to reconcile bioclimatism with the symbolic-cultural value represented by this vernacular architecture form. It is hopped that this study can be considered as a methodological contributition for new sustainable projects （materials, technics and services） of low-incoming houses in this Latin American region.

关键词： Bioclimatic design sustainable architecture vernacular habitat social housing natural ventilation.

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Sustainability of Vernacular architecture as a Basis for New Popular Housing Projects in Arequipa, Peru

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Journal of Civil Engineering and architecture 2017年第9期11卷 831-840页

作者： Marco Antonio Vilca Mamani Leopoldo Eurico Gongalves Bastos Programa de P6s-Graduacao em Arquitetura--PROARQ Faculdade de Arquitetura e Urbanismo--FAU Universidade Federaldo Rio de Janeiro---UFRJ Rio de Janeiro 21941-901 Brazil Mestrado em Arquitetura e Cidade-universidade vila velha Vitoria-ES 29102-920 Brazil

The aim of this work is to present an analysis about three vernacular houses （Churaj6n, Moral, and Chicha） from remarkable architectonic periods of the Arequipa city in Peru： Pre-Spanish, Colonial, and Republican. Some historic facts related with the region are presented in order to furnish a general panorama. This city is an oasis on the border of the Atacama Desert, and aside there are three volcanoes. Also, at the last 40th years, this region has suffered eight earthquakes. The bio-environmental equilibrium is fragile. Nowadays, due to the urban spread and the increase of the land price, the poor people go to live in the city periphery inside uncomfortable and fragile houses. Also, it is observed an intense occupation of the meadow areas which are crucial to maintain the regional climate, food production, and the ecosystem. Fundamentals of social sustainability and bioclimatic architectures are employed in the analysis in order to create conditions to empower poor people and an environment protection.

关键词： Vemacular architecture social sustainability bioclimatic approach Arequipa.

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Strategic Analysis of a Regulatory Conflict Using Dempster-Shafer Theory and AHP for Preference Elicitation

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Journal of Systems Science and Systems Engineering 2019年第4期28卷 415-433页

作者： Maisa M. Silva Keith W. Hipel D. Marc Kilgour Ana Paula C. S. Costa department of Management Engineerin& universidade Federal de Pernambuco Recife Brazil department of Systems Design Engineering University of Waterloo Waterloo Canada department of Mathematics Wilfrid Laurier UniversityWaterloo Canada

Dempster-Shafer Theory (DST) and the Analytic Hierarchy Process (AHP) are integrated in order to elicit preference information from experts regarding decision makers (DMs) involved in a regulatory conflict. More precisely, DST is used for combining expert knowledge regarding preferences of a specific DM (the regulatory body), and AHP is employed for ranking feasible states in the conflict for this same DM. In order to illustrate how this preference elicitation proposal can be conveniently implemented in practice within the Graph Model for Conflict Resolution (GMCR), it is applied to a real construction dispute located in the city of Ipojuca, Brazil. The conflict is modeled with three DMs: support, opposition, and the regulatory body. Results show that the new preference methodology possesses many inherent advantages including high flexibility the ability to capture uncertainty or even ignorance about preferences, the possibility of combining expert knowledge with respect to missing preferences, and a substantial reduction in the number of pairwise comparisons of states required to express preference information.

关键词： Regulatory conflict graph model for conflict resolution absence of preference information DST-AHP

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The 2015/16 El Nino-related glacier changes in the tropical Andes

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Frontiers of Earth Science 2019年第2期13卷 422-429页

作者： Bijeesh Kozhikkodan VEETTIL Jefferson Cardia SIMOES department for Management of Science and Technology Development Ton Due Thang UniversityHo Chi Minh CityVietnam Faculty of Environment and Labour Safety Ton Due Thang UniversityHo Chi Minh CityVietnam Centro Polar e Climatico Universidade Federal do Rio Grande do Sul (UFRGS)CEP91501-970 Porto AlegreBrazil

Significant changes in the area and snowline altitude of two glacierized mountains - Nevado Champara (Cordillera Blanca,Peru) and Cerro Tilata (Cordillera Real,Bolivia)- in the tropical Andes,before and after the recent El Nino in 2015/16 period,have been analysed using Sentinel 2A and Landsat *** is seen that the recent El Nino has been accompanied by higher fluctuation in glacier coverage on Nevado Champara and the loss of glacier coverage on Cerro Tilata was very high during the past 16 *** in snowline altitude of selected glaciers was very high after the 2015/16 El *** in the area covered by snow and ice during the La Nina periods were not enough to cover the ice loss occurred during the previous El Nino events and the strongest El Nino in 2015/ 16 was followed by a significant loss of ice-covered areas in the tropical *** resources in this region will be affected in the near future if the current trends in glacier decline *** strategies needs to be implemented to reduce the impacts of the continuing loss of glacierized on regional communities in the tropical Andean region.

关键词： ENSO tropical Andes glacier loss snowline altitude Sentinel 2A

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