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Fine‑tuning genomic and pedigree inbreeding rates in equine population with a deep and reliable stud book:the case of the Pura Raza Española horse

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Journal of Animal Science and Biotechnology 2023年第2期14卷 515-528页

作者： Davinia Isabel Perdomo‑Gonzalez Nora Laseca Sebastian demyda‑Peyras Mercedes Valera Isabel Cervantes Antonio Molina departamento agronomia Escuela Tecnica Superior de Ingenieria AgromomicaUniversidad de SevillaCtra Utrera Km 141013 SevillaSpain departamento de Genetica Universidad de CordobaCordobaSpain Facultad de Ciencias Veterinarias Universidad Nacional de La PlataLa PlataArgentina Consejo Nacional de Investigaciones Cientificas y Tecnicas(CONICET) La PlataArgentina departamento de Produccion Animal Facultad de VeterinariaUniversidad Complutense de MadridMadridSpain.

Background:Estimating inbreeding,which is omnipresent and inevitable in livestock populations,is a primary goal for management and animal breeding especially for those interested in mitigating the negative consequences of inbreeding.Inbreeding coefficients have been historically estimated by using pedigree information;however,over the last decade,genome-base inbreeding coefficients have come to the forefront in this field.The Pura Raza Espanola(PRE)horse is an autochthonous Spanish horse breed which has been recognised since 1912.The total PRE population(344,718 horses)was used to estimate Classical(F),Ballou’s ancestral,Kalinowski’s ancestral,Kalinowski’s new and the ancestral history coefficient values.In addition,genotypic data from a selected population of 805 PRE individuals was used to determine the individual inbreeding coefficient using SNP-by-SNP-based techniques(methods of moments-FHOM-,the diagonal elements of the genomic-FG-,and hybrid matrixes-FH-)and ROH measures(FRZ).The analyse of both pedigree and genomic based inbreeding coefficients in a large and robust population such as the PRE horse,with proven parenteral information for the last 40 years and a high degree of completeness(over 90%for the last 70 years)will allow us to understand PRE genetic variability better and the correlations between the estimations will give the data greater reliability.Results:The mean values of the pedigree-based inbreeding coefficients ranged from 0.01(F for the last 3 generations-F3-)to 0.44(ancestral history coefficient)and the mean values of genomic-based inbreeding coefficients varied from 0.05(FRZ for three generations,FH and FHOM)to 0.11(FRZ for nine generations).Significant correlations were also found between pedigree and genomic inbreeding values,which ranged between 0.58(F3 with FHOM)and 0.79(F with FRZ).In addition,the correlations between FRZ estimated for the last 20 generations and the pedigree-based inbreeding highlight the fact that fewer generations of genomic data are required when comparing total

关键词： Genomic inbreeding Horses Pedigree inbreeding

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Agronomic assessment of two populations of intermediate wheatgrass—Kernza^(®)(Thinopyrum intermedium)in temperate South America

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Grassland Research 2022年第4期1卷 262-278页

作者： Andres Locatelli Lucia Gutierrez Olivier Duchene Pablo R.Speranza Valentin D.Picasso Risso Polo agro-alimentario Centro Universitario Litoral NorteEstacion Experimental Mario Antonio CassinoniUniversidad de la RepúblicaPaysanduUruguay departamento de Producción Vegetal Facultad de AgronomiaUniversidad de la RepúblicaPaysanduUruguay departamento de Biometría Estadística y ComputaciónFacultad de AgronomíaUniversidad de la RepúblicaMontevideoUruguay department of Agronomy University of Wisconsin–MadisonMadisonWisconsinUSA Agroecology and Environment Research Unit ISARALyonFrance departamento de Biología Vegetal Facultad de AgronomiaUniversidad de la RepúblicaMontevideoUruguay departamento de Producción Animal y Pasturas Facultad de AgronomiaUniversidad de la RepúblicaMontevideoUruguay

Background Kernza®intermediate wheatgrass is a perennial grain and forage crop that can provide several ecosystem services.Major research efforts focused on Kernza have taken place in high latitudes.The goal of this study was to evaluate,for the first time,the agronomic performance of Kernza in a low-latitude region with mild winters.Methods A KS-cycle 4 Kernza population(A)was planted in spring in Wisconsin,USA,and selected in one cycle for lower vernalization requirements,obtaining a new population(B).These two populations,at three nitrogen(N)fertilization rates,were evaluated in a full factorial,completely randomized field experiment in Uruguay over 2 years.Results The populations were similar in grain yields and flowering time in the 1st year,but population B had 63%lower grain yield in the 2nd year and 20%lower forage yield throughout the experiment.Increasing the N rate to 160 kg ha−1 led to a 63%increase in grain yield and 28%increase in forage yield across populations.Forage yields and nutritive values were similar to those reported in the northern hemisphere.However,grain yields for both the 1st(316 kg ha−1)and 2nd year(41 kg ha−1)were lower due to reduced flowering and weed competition.Conclusions Expansion of Kernza to lower-latitude regions will require further breeding to improve reproductive performance.

关键词： low-latitude regions nitrogen fertilization rates perennial grains Thinopyrum intermedium vernalization requirements

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Using dung beetles to evaluate the effects of urbanization on Atlantic Forest biodiversity

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Insect Science 2013年第3期20卷 393-406页

作者： Vanesca Korasaki Jose Lopes George Gardner Brown Julio Louzada Departamento de Agronomia departamento de Biologia Animal e Vegetal Universidade Estadual de Londrina Londrina-PR Empresa Brasileira de Pesquisa Agropecu~ria Embrapa Florestas Colombo-PR departamento de Biologia Setor de Ecologia Universidade Federal de Lavras Lavras Minas Gerais Brazil

We used dung beetles to evaluate the impact of urbanization on insect biodi- versity in three Atlantic Forest fragments in Londrina, Parana, Brazil. This study provides the first empirical evidence of the impact of urbanization on richness, abundance, compo- sition and guild structure of dung beetle communities from the Brazilian Atlantic Forest. We evaluated the community aspects （abundance, richness, composition and food guilds） of dung beetles in fragments with different degrees of immersion in the urban matrix using pitfall traps with four alternative baits （rotten meat, rotten fish, pig dung and decaying ba- nana）. A total of 1 719 individuals were collected, belonging to 29 species from 11 genera and six Scarabaeinae tribes. The most urban-immersed fragment showed a higher species dominance and the beetle community captured on dung presented the greatest evenness. The beetle communities were distinct with respect to the fragments and feeding habits. Except for the dung beetle assemblage in the most urbanized forest fragment, all others exhibited contrasting differences in species composition attracted to each bait type. Our results clearly show that the degree of urbanization affects Atlantic Forest dung beetle communities and that the preservation of forest fragments inside the cities, even small ones, can provide refuges for Scarabaeinae.

关键词： bioindicator coprophagous beetles food preference fragmentation habitat loss urban matrix

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Species-specific biomass allometric models and expansion factors for indigenous and planted forests of the Mozambique highlands

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Journal of Forestry Research 2021年第3期32卷 1047-1065页

作者： Tarquinio Mateus Magalhaes Victoria Norberto Cossa Benard Soares Guedes Amélia Saraiva Monguela Fanheiro departamento de Engenharia Florestal Faculdade de Agronomia e Engenharia FlorestalUniversidade Eduardo MondlaneCampus UniversitárioEdifício no.1257MaputoRepública de Mocambique departamento de Sociologia Rural Escola Superior de Desenvolvimento RuralUniversidade Eduardo MondlaneVilankuloRepública de Mocambique

Secondary Miombo woodlands and forest plantations occupy increasing areas in Mozambique,the former due to anthropogenic activities.Plantations,mainly species of Eucalyptus and Pinus,are being established on sites previously covered by secondary Miombo woodlands.This affects the evolution,cycle and spatiotemporal patterns of carbon(C)storage and stocks in forest ecosystems.The estimation of C storage,which is indispensable for formulating climate change policies on sequestrating CO_(2),requires tools such as biomass models and biomass conversion and expansion factors(BCEF).In Mozambique,these tools are needed for both indigenous forests and plantations.The objective of this study is to fit species-specific allometric biomass models and BCEF for exotic and indigenous tree species.To incorporate efficient inter-species variability,biomass equations were fitted using nonlinear mixed-effects models.All tree component biomass models had good predictability;however,better predictive accuracy and ability was observed for the 2-predictors biomass model with tree height as a second predictor.The majority of the variability in BCEF was explained by the variation in tree species.Miombo species had larger crown biomass per unit of stem diameter and stored larger amounts of biomass per stem volume.However,due to relatively rapid growth,larger stem diameters,heights,and stand density,the plantations stored more biomass per tree and per unit area.

关键词： Biomass allometry Biomass partitioning Miombo Exotic forest plantations Brachystegia spiciformis Julbernardia globifl ora Eucalyptus Pinus

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Changes in Olsen P in Relation to P Balance in Contrasting Agricultural Soils

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Pedosphere 2016年第5期26卷 636-642页

作者： Isabel DIAZ Jose TORRENT departamento de Ingeniería Aeroespacial y Mecánica de Fluidos Escuela Tdcnica Superior de Ingeniería Agronómica(ETSIA)Universidad de SevillaCtra de Utrera km 141013 Sevilla(Spain) Departamento de Agronomia Universidad de CordobaEdificio C4Campus de Rabanales14071 Cordoba(Spain)

Maintaining soil phosphorus(P) at adequate levels for plant growth requires assessing how the long-term P balance(viz., the difference between P inputs and outputs) results in changes in soil test P. The hypothesis that routinely measured soil properties can help predict the conversion factor of P balance into Olsen P was tested at 39 sites in agricultural areas of the Mediterranean region in Spain. A set of soil samples from each site was analyzed for Olsen P, inorganic P(P extracted using 0.5 mol L^(-1) H_2SO_4), pseudototal P(P extracted using 0.5 mol L^(-1) H_2SO_4 following ignition at 550℃), and organic P(the difference between pseudototal P and inorganic P). Organic and Olsen P were uncorrelated in most of the 39 soil sets, which suggests that organic P content changed little with P inputs and outputs. The slopes of the regression lines of Olsen P against pseudototal and inorganic P, which were used as two different measures of the conversion factor, ranged widely(from 0.03 to 0.25 approximately), with their average values(about 0.10) being similar to those found in long-term experiments conducted in temperate areas. Neither conversion factor was significantly correlated with any routinely measured soil property; however, the conversion factor for inorganic P was significantly lower for calcareous soils than for noncalcareous soils. Our negative results suggest the need to isolate the influence of soil properties from that of management systems and environmental factors relating to P dynamics in future studies.

关键词：磷素平衡农业土壤 H2SO4 土壤性质土壤测试转换因子常规测量石灰性土壤

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Soil organic carbon storage in forest restoration models and environmental conditions

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Journal of Forestry Research 2022年第4期33卷 1123-1134页

作者： Ranieri Ribeiro Paula Miguel Calmon Maria Leonor Lopes-Assad Eduardo de SáMendonça Departamento de Agronomia Programa de Pós-Graduação em Produção VegetalUniversidade Federal do Espírito SantoAlto UniversitárioGuararemaAlegreEspírito Santo CEP 29500-000Brazil World Resources Institute SalvadorBahia CEP 40290-040Brazil departamento de Recursos Naturais e Proteção Ambiental Universidade Federal de São CarlosArarasSão Paulo CEP 13600-970Brazil

The scale of forest and landscape restoration is expected to increase during the UN decade on Ecosystem Restoration and its contribution to the provision of critical ecosystem services to society.Several models of forest restoration may improve ecosystem services,including soil organic carbon(SOC)storage.A review was carried out to access:(1)the variability of SOC storage between worldwide forest restoration models and,(2)the effects of climate,soil class,soil texture,and vegetation type on SOC storage.We reviewed 119 primary studies with information on SOC and soil texture for different forest restoration models.The restoration models were grouped into four categories:natural regeneration,monocultures,agroforestry,and mixed forest.SOC data was extracted from these four restoration models,other land uses(cropland,bare land,grassland,and natural forest),climate regimes,and soil properties.The SOC storage in the forest restoration models and other land uses at a global scale ranged between 0.1 to 514 Mg ha^(-1).The overall mean value for SOC storage was higher for natural regeneration(112 Mg ha^(-1)),followed by agroforestry(74 Mg ha^(-1)),mixed forest(73 Mg ha^(-1)),and monocultures(68 Mg ha^(-1)).However,the average SOC storage was similar among the four restoration models in the moist warm climate zone.The SOC storage mean value in the moist cool zone was 23%higher than the dry cool zone(81 and 62 Mg ha^(-1),respectively),and 50%higher for the moist warm zone when compared to the dry warm climatic zone(74 and 38 Mg ha^(-1),respectively).The SOC storage of the restoration models was positively related to soil depth(0.59;pdepths,respectively.In addition,sandy soils showed smaller mean values of SOC storage than medium to clay soils,especially in deeper soil layers.Furthermore,SOC storage was positively related between restoration models and other land

关键词： Forest restoration Land uses Soil type Soil texture Climate

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Species of Lasiodiplodia associated with mango in Brazil

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Fungal Diversity 2013年第4期61卷 181-193页

作者： Marília W.Marques Nelson B.Lima Marcos Antônio de Morais Jr Maria Angélica G.Barbosa Breno O.Souza Sami J.Michereff Alan J.L.Phillips Marcos P.S.Câmara Departamento de Agronomia Universidade Federal Rural de Pernambuco52171-900 RecifeBrazil departamento de Genética Universidade Federal de Pernambuco50732-970 RecifeBrazil Embrapa Semi-Árido 56302-970 PetrolinaBrazil Centro de Recursos Microbiológicos Departamento de Ciências da VidaFaculdade de Ciências e TecnologiaUniversidade Nova de Lisboa2829-516 CaparicaPortugal

Mango(Mangifera indica)is a major tropical fruit species cultivated in Brazil.The objective of this study was to identify species of Lasiodiplodia associated with dieback and stem-end rot of mango in the semi-arid region of Northeastern Brazil,and compare the species in relation to mycelial growth,pathogenicity and virulence.A total of 120 isolates of Lasiodiplodia were used and identifications were made using a combination of morphology and phylogenetic analysis based on partial translation elongation factor 1-αsequence(EF1-α)and internal transcribed spacers(ITS).The following species were identified:Lasiodiplodia crassispora,L.egyptiacae,L.hormozganensis,L.iraniensis,L.pseudotheobromae,L.theobromae and Lasiodiplodia sp..Lasiodiplodia theobromae was the most frequently isolated species,which represented 41%of all the isolates.Only this species had been previously reported on mango in Brazil,while the other species represent the first report associated with mango tree diseases in this country.Lasiodiplodia crassispora is reported for the first time associated with mango diseases worldwide.There were significant differences in mycelial growth rates among the Lasiodiplodia species and also in the optimum temperature for growth.All species of Lasiodiplodia were pathogenic on mango fruit.There were significant differences in virulence among the species,wherein L.hormozganensis and Lasiodiplodia sp.were the most virulent,while the least virulent were L.iraniensis,L.pseudotheobromae,L.crassispora and L.egyptiacae.

关键词： Botryosphaeriaceae Mangifera indica ITS EF1-α Phylogeny Virulence

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Foodborne outbreaks in Brazil associated with fruits and vegetables:2008 through 2014

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Food Quality and Safety 2018年第4期2卷 173-181页

作者： Susana de Oliveira Elias Luana Tombini decol Eduardo Cesar Tondo departamento de Ciências dos Alimentos-Universidade Federal do Rio Grande do Sul Instituto de Ciência e Tecnologia de Alimentos-Av.Bento Gonçalves9500 Prédio 43212 Agronomia CEP:91505-970-Porto Alegre-RS-Brasil

Objectives:Foodborne disease outbreaks linked to fruits and vegetables have been increasing in occurrence worldwide;therefore,the aim of this study was to identify the reported foodborne outbreaks associated with fruit and vegetable consumption in Brazil from 2008 to 2014.Results And Limitations:Thirty produce related outbreaks resulted in 2926 illnesses,347 hospitalizations,and no deaths.Only bacterial pathogens were identified as etiological agents.Among these,Salmonella was the most frequent(30 per cent of outbreaks)followed by Staphylococcus aureus(23.3 per cent),Escherichia coli(10 per cent),Bacillus cereus(6.6 per cent),and thermotolerant coliforms(3.3 per cent),whereas etiological agents could not be determined for 26.6 per cent of outbreaks.The most common food vehicles implicated in outbreaks were generically named as fruits and vegetables(46.6 per cent of outbreaks).The term salad was used generically and specifically like salads(two outbreaks),raw/cooked salads(four outbreaks),vegetable salad,tropical salad,Caesar salad,and raw salad of cabbage and tomato.Only one outbreak was related exclusively to fruit(fruit pulp),whereas other outbreaks were related to cooked carrot,lettuce,cucumber,watermelon/cabbage,and chard/beet.Contamination sources and issues related to the future control of produce-related foodborne disease outbreaks are discussed.

关键词： produce pathogens Salmonella foodborne illness disease surveillance notification

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Effect of mini-cutting size on adventitious rooting and morphophysiological quality of Ilex paraguariensis plantlets

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Journal of Forestry Research 2021年第2期32卷 815-822页

作者： Nathalia Pimentel denise Gazzana Janaina de Fatima Spanevello Kelen Haygert Lencina Dilson Antônio Bisognin Programa de Pós-Graduação em Engenharia Florestal Centro de Ciências Rurais da Universidade Federal de Santa MariaAvenida Roraima1000Santa MariaRS 97105-900Brazil Curso de Graduação em agronomia Centro de Ciências Rurais da Universidade Federal de Santa MariaAvenida Roraima1000Santa MariaRS 97105-900Brazil departamento de Fitotecnia Centro de Ciências RuraisUniversidade Federal de Santa MariaAv.Roraima1000Santa MariaRS 97105-900Brazil

As the energizing and therapeutic effects of infusions of mate(Ilex paraguariensis A.St.-Hil)leaves are increasingly recognized,rising global consumption is also increasing the demand for plantlets with high genetic and morphological qualities.Mini-cuttings are an alternative for clonal plantlets;however,more details are needed on factors that affect the success of this technique.Here,toward maximizing production,we evaluated adventitious rooting competence of mini-cuttings of different sizes and the morphophysiological quality of the resultant plantlets.Small(one bud;length up to 2.5 cm),medium(multiple buds;length 2.6–5.0 cm),and large(multiple buds;length 5.1–10.0 cm)mini-cuttings were planted in a mixture of commercial substrate,vermiculite,and coarse sand(1:1:1 v:v:v),grown in a humidity chamber,then evaluated after 45,60,75,and 90 days for survival,percentage of callus and shoot formation,number and length of shoots,percentage of rooted cuttings,and number and length of roots.Any rooted mini-cuttings were then cultivated in commercial substrate and subsurface soil(2:1 v:v)and evaluated after 30,60,90 and 120 days of cultivation for morphophysiology of the plantlets,percentage of survival,number of leaves,shoot height,stem diameter,and ratio of shoot height to stem diameter.After 120 days,the plantlets were evaluated for the ratio of shoot and root dry mass,total length,surface area,total volume,and mean diameter of roots and Dickson quality index.Adventitious rooting of the mini-cuttings and the morphophysiological quality of the plantlets were not influenced by the size of the vegetative propagule.Therefore,single-bud mini-cuttings have similar adventitious rooting competence,and result in plantlets with adequate morphophysiological quality,based upon leaf development,shoot height,stem diameter and length,and surface area,volume and diameter of roots.Single-bud mini-cuttings up to 2.5 cm long can thus be used to maximize production of mate plantlets by mini-cuttings.

关键词： Aquifoliaceae Clonal forestry Mini-cutting technique Plantlet production Vegetative propagation

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Botryosphaeria, Neofusicoccum, Neoscytalidium and Pseudofusicoccum species associated with mango in Brazil

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Fungal Diversity 2013年第4期61卷 195-208页

作者： Marília W.Marques Nelson B.Lima Marcos A.de Morais Jr Sami J.Michereff Alan J.L.Phillips Marcos P.S.Câmara Departamento de Agronomia Universidade Federal Rural de Pernambuco52171-900 RecifeBrazil departamento de Genética Universidade Federal de Pernambuco50732-970 RecifeBrazil Centro de Recursos Microbiológicos Departamento de Ciências da VidaFaculdade de Ciências e TecnologiaUniversidade Nova de Lisboa2829-516 CaparicaPortugal

Members of the Botryosphaeriaceae are well known fungi associated with dieback,canker and fruit rot on various hosts worldwide,including mango.The aim of this study was identify a large collection of Botryosphaeriaceae species associated with dieback and stem-end rot of mango in the semi-arid region of Northeastern Brazil,and compare the species in relation to mycelial growth,pathogenicity and virulence.A total of 115 isolates were sampled and based on morphology and DNA sequence data(ITS and EF1-α)seven taxa were identified,namely,Botryosphaeria dothidea,B.mamane,Fusicoccum fabicercianum,Neofusicoccum parvum,N.brasiliense sp.nov,Neoscytalidium dimidiatum and Pseudofusicoccum stromaticum.B.dothidea and P.stromaticum were the most commonly isolated species,which represented 37%and 33%of all isolates respectively.B.mamane is reported for the first time in association with mango diseases worldwide.There were significant differences among the species obtained in this study in relation to optimum temperature for mycelial growth and mycelial growth rates.All species were pathogenic on mango fruit.There were significant differences in virulence among the species,with Ne.dimidiatum and N.parvum being the most virulent species,while P.stromaticum was the least virulent.

关键词： Botryosphaeriaceae Dieback Stem-end rot Mangifera indica Pathogenicity Virulence Phylogeny

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