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Comprehensive DNA barcode reference library and optimization of genetic divergence threshold facilitate the exploration of species diversity of green lacewings (Neuroptera: Chrysopidae)

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Insect Science 2024年第2期31卷 613-632页

作者： Yan Lai Kaiyu Li Xingyue Liu deparment of Entomology Cllege of Plant ProtectionChina Agricultural UniversityBejingChina College of Bioogical Sciencs China Agricultural UniversityBeijingChina

Chrysopidae are a family of Neuroptera of significant importance in biocontrol against agricultural pests because of their predatory ***,the taxonomy of Chrysopidae lacks a comprehensive revision,which impedes the exploration of species diversity as well as the selection and the conservation of green lacewings as biocontrol *** have established a DNA barcode reference library of the Chinese green lacewings based on an approximately complete sampling(95.63%)in 25 of the 34 provincial regions in China,comprising 1119 barcodes of 25 genera and 197 species(representing 85%genera and 43.62%species from China).Combining other 1049 high quality green lacewing DNA barcodes,we first inferred the optimal threshold of interspecific genetic divergence(1.87%)for successful species identification in multiple simulated scenarios based on present *** further inferred the threshold of genetic divergence(7.77%)among genera with biocontrol *** inference and performance of the threshold appears to be mainly associated with the completeness of sampling,the proportion of closely related species,and the analytical *** new combinations,Apertochrysa platypa(Yang&Yang,1991)***.,Apertochrysa shennongana(Yang&Wang,1990)***.,Apertochrysa pictifacialis(Yang,1988)***.,Apertochrysa helana(Yang,1993)***.,Plesiochrysa rosulata(Yang&Yang,2002)***.,and Signochrysa hainana(Yang&Yang,1991),are proposed according to integrative species *** library and optimal threshold will effectively facilitate the exploration of species diversity of green *** study also provides a methodological reference in molecular delimitation of other insects.

关键词： Chrysopidae DNA barcode genetic distance optimal threshold species delimitation

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Unveiling a new regulator: Vacuolar V-ATPase mediates brassinosteroid signaling in Arabidopsis

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Molecular plant 2024年第2期17卷 227-229页

作者： Shikha Malik Justin W.Walley Department of plant pathology Entomologyand Microbiologylowa State UniversityAmesIA 50011USA

plant growth and development are intricately regulated by hormones such as auxins,gibberellins,jamonates,cytokinins,and brassinosteroids(BRs).BRs are a group of plant steroid hormones that play a vital role in plant growth and response to the *** regulate many biological processes including cell elongation,cell division,and male fertility,as well as abiotic and biotic stress responses.

关键词： media fertility brassinosteroid

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Sporophytic control of tapetal development and pollen fertility by a mitogen-activated protein kinase cascade in rice

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Journal of Integrative plant Biology 2024年第7期66卷 1500-1516页

作者： Jianguo Zeng Manman Duan Yiqing Wang Guangtao Li Yujing You Jie Shi Changhao Liu Jinyang Zhang Juan Xu Shuqun Zhang Jing Zhao Department of plant pathology Nanjing Agricultural UniversityNanjing 210095China State Key Laboratory of plant Physiology and Biochemistry College of Life SciencesZhejiang UniversityHangzhou 310058China Division of Biochemistry University of MissouriColumbia65211MOUSA

Tapetum,the innermost layer of the anther wall,provides essential nutrients and materials for pollen *** degradation of anther tapetal cells is a prerequisite for normal pollen development in flowering *** cells facilitate male gametogenesis by providing cellular contents after highly coordinated programmed cell death(PCD).Tapetal development is regulated by a transcriptional ***,the signaling pathway(s)involved in this process are poorly *** this study,we report that a mitogen-activated protein kinase(MAPK)cascade composed of OsYDA1/OsYDA2-OsMKK4-OsMPK6 plays an important role in tapetal development and male gametophyte *** of function of this MAPK cascade leads to anther indehiscence,enlarged tapetum,and aborted pollen *** cells in osmkk4 and osmpk6 mutants exhibit an increased presence of lipid body-like structures within the cytoplasm,which is accompanied by a delayed occurrence of *** of a constitutively active version of OsMPK6(CA-OsMPK6)can rescue the pollen defects in osmkk4 mutants,confirming that OsMPK6 functions downstream of OsMKK4 in this *** crosses also demonstrated that the MAPK cascade sporophyticly regulates pollen *** study reveals a novel function of rice MAPK cascade in plant male reproductive biology.

关键词： degradation MAPK cascade pollen fertility rice tapetum

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Development of a stable attenuated double-mutant of tobacco mosaic virus for cross-protection

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Journal of Integrative Agriculture 2024年第7期23卷 2318-2331页

作者： Xiaojie Xu Shaoyan Jiang Chunju Liu Xujie Sun Qing Zhu Xiuzhai Chen Pengchao Jiang Fenglong Wang Yanping Tian Xiangdong Li The Engineering Research Institute of Agriculture and Forestry Ludong UniversityYantai 264025China Laboratory of plant Virology Department of Plant PathologyCollege of Plant ProtectionShandong Agricultural UniversityTai’an 271018China Weifang Tobacco Corporation Weifang 261031China Linyi Tobacco Corporation Linyi 276000China Tobacco Research Institute Chinese Academy of Agricultural SciencesQingdao 266101China

Tobacco(Nicotiana tabacum)and tomato(Solanum lycopersicum)are two major economic crops in *** mosaic virus(TMV;genus Tobamovirus)is the most prevalent virus infecting both ***,some widely cultivated tobacco and tomato cultivars are susceptible to TMV and there is no effective strategy to control this ***-protection can be a safe and environmentally friendly strategy to prevent viral ***,stable attenuated TMV mutants are *** this study,we found that the substitutions in the replicase p126,arginine at position 196(R^(196))with aspartic acid(D),glutamic acid at position 614(E^(614))with glycine(G),serine at position 643(S^(643))with phenylalanine(F),or D at position 730(D^(730))with S,significantly reduced the virulence and replication of ***,only the mutation of S^(643) to F reduced the RNA silencing suppression activity of TMV p126.A double-mutant TMV-E614G-S643F induced no visible symptom and was genetically stable through six successive passages in tobacco ***,our results showed that TMV-E614G-S643F double-mutant could provide effective protection against the wild-type TMV infection in tobacco and tomato *** study reports a promising mild mutant for cross-protection to control TMV in tobacco and tomato plants.

关键词： cross-protection double-mutant p126 tobacco mosaic virus virulence

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RLKdb:A comprehensively curated database of plant receptor-like kinase

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Molecular plant 2024年第4期17卷 513-515页

作者： Zhiyuan Yin Jinding Liu Daolong Dou Department of plant pathology Nanjing Agricultural UniversityNanjing 210095China Academy for Advanced Interdisciplinary Studies Nanjing Agricultural UniversityNanjing 210095China

Dear Editor,Since the first plant receptor-like kinase(RLK)gene ZmPK1 was cloned from Zea mays in 1990(Walker and Zhang,1990),this large gene family has been extensively studied and shown to play crucial roles in growth,development,and immunity(Tang et al.,2017).RLKs are widespread in the plant ***,biological functions of most RLKs remain largely elusive(Dievart et al.,2020).Given RLKs share a conserved monophyletic RLK/Pelle kinase domain,RLKs in several model plants are classified into distinct families by extracellular domains(Shiu and Bleecker,2001).However,independent domain shuffling in specific lineages drives the origin of novel families,which raises a question what is the landscape of RLKs across the entire plant kingdom?Previously,sequence-homology-based methods have been widely used for RLK identification and classification,which might miss distantly related proteins with similar structures and potential novel families not mentioned in the *** academic community urgently requires a dedicated database for a systematic overview of the RLK gene family,providing data support for in-depth research on RLK ***,we used a topology-based method to accurately isolate the RLKomes from *** obtained RLKomes were further classified into(sub)families based on extracellular *** con-structed a comprehensively curated plant RLK database(https://***/rlkdb),which contains valuable re-sources for investigating the origin and evolution of the RLK fam-ily and multiple online tools for personalized analysis.

关键词： database comprehensive origin

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Distinct phosphorylation optimizes pathogen-induced PA and ROs bursts

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Molecular plant 2024年第4期17卷 525-527页

作者： Kaihuai Lil Ruize Zhang Yong Wang Fengquan Liu Zheng Qing Fu Department of plant pathology College of AgricultureGuizhou UniversityGuiyang 550025China Department of Biological Sciences University of South CarolinaColumbiaSC29208USA Institute of plant Protection Jiangsu Academy of Agricultural SciencesNanjingJiangsu 210014China

Phospholipids hold a multifaceted function in cellular *** primary function of phospholipids is to serve as essential building blocks of cell membranes,which gives cells crucial structural support and facilitates cellular *** that,phospholipids also act as key signaling molecules that coordinate vital cellular processes such as organismal development,homeostasis,and adaptation to environmental *** being the smallest and simplest phospholipid,phosphatidic acid(PA)plays a crucial role as a metabolic intermediate and second messenger.

关键词： homeostasis lipids smallest

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Nitrogen availability mediates the effects of roots and mycorrhizal fungi on soil organic carbon decomposition:A meta-analysis

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Pedosphere 2024年第2期34卷 289-296页

作者： Tongshuo BAI Yunpeng QIU Shuijin HU Ecosystem Ecology Laboratory College of Resources and Environmental SciencesNanjing Agricultural UniversityNanjing 210095China Department of Entomology&plant pathology North Carolina State UniversityRaleigh NC 27695USA

plant roots and their associated mycorrhizal fungi critically mediate the decomposition of soil organic carbon(C),but the general patterns of their impacts over a broad geographical range and the primary mediating factors remain *** on a synthesis of 596 paired observations from both field and greenhouse experiments,we found that living roots and/or mycorrhizal fungi increased organic C decomposition by 30.9%,but low soil nitrogen(N)availability(i.e.,high soil C:N ratio)critically mitigated this promotion *** addition,the positive effects of living roots and/or mycorrhizal fungi on organic C decomposition were higher under herbaceous and leguminous plants than under woody and non-leguminous plants,***,there was no significant difference between arbuscular mycorrhizal fungi and ectomycorrhizal fungi in their effects on organic C ***,roots and/or mycorrhizal fungi significantly enhanced the decomposition of leaf litter but not root *** findings advance our understanding of how roots and their symbiotic fungi modulate soil C dynamics in the rhizosphere or mycorrhizosphere and may help improve predictions of soil global C balance under a changing climate.

关键词： arbuscular mycorrhizal fungi ectomycorrhizal fungi leaf litter leguminous plant mycorhizosphere rhizosphere root litter soil C:N ratio

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C-terminal frameshift mutations generate viable knockout mutants with developmental defects for three essential protein kinases

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aBIOTECH 2024年第2期5卷 219-224页

作者： Yun Zhang Miao-Miao Cui Run-Nan Ke Yue-Dan Chen Kabin Xie National Key Laboratory of Crop Genetic Improvement Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhan 430070China Hubei Key Laboratory of plant pathology Huazhong Agricultural UniversityWuhan 430070China

Loss-of-function mutants are fundamental resources for gene function ***,it is difficult to generate viable and heritable knockout mutants for essential ***,we show that targeted editing of the C-terminal sequence of the embryo lethal gene MITOGEN-ACTIVATED PROTEIN KINASES 1(OsMPK1)results in weak *** C-terminal-edited osmpk1 mutants displayed severe developmental defects and altered disease resistance but generated tens of viable seeds that inherited the *** the same C-terminal editing approach,we also obtained viable mutants for a wallassociated protein kinase(Os07g0493200)and a leucine-rich repeat receptor-like protein kinase(Os01g0239700),while the null mutations of these genes were *** data suggest that protein kinase activity could be reduced by introducing frameshift mutations adjacent to the C-terminus,which could generate valuable resources for gene function studies and tune protein kinase activity for signaling pathway engineering.

关键词： CRISPR/Cas9 Lethal mutant Protein kinases Genome editing C-terminus

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A circular single-stranded DNA mycovirus infects plants and confers broad-spectrum fungal resistance

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Molecular plant 2024年第6期17卷 955-971页

作者： Xianhong Wang Ioly Kotta-Loizou Robert H.A.Coutts Huifang Deng Zhenhao Han Ni Hong Karim Shafik Liping Wang Yashuang Guo Mengmeng Yang Wenxing Xu Guoping Wang National Key Laboratory for Germplasm Innovation&Utilization of Horticultural Crops Wuhan 430070China Hubei Hongshan Laboratory Wuhan 430070China College of plant Science and Technology Huazhong Agricultural UniversityWuhan 430070China Key Lab of plant pathology of Hubei Province Wuhan 430070China Department of Life Sciences Faculty of Natural SciencesImperial College LondonLondon SW72AZUK Department of Clinical Pharmaceutical and Biological ScienceSchool of Life and Medical SciencesUniversity of HertfordshireHatfield AL109ABUK Department of plant pathology Faculty of AgricultureAlexandria UniversityAlexandria 21526Egypt

Circular single-stranded DNA(ssDNA)viruses have been rarely found in fungi,and the evolutionary and ecological relationships among ssDNA viruses infecting fungi and other organisms remain *** this study,a novel circular ssDNA virus,tentatively named Diaporthe sojae circular DNA virus 1(DsCDV1),was identified in the phytopathogenic fungus Diaporthe sojae isolated from pear ***1 has a monopartite genome(3185 nt in size)encapsidated in isometric virions(21-26 nm in diameter).The genome comprises seven putative open reading frames encoding a discrete replicase(Rep)split by an intergenic region,a putative capsid protein(CP),several proteins of unknown function(P1-P4),and a long intergenic ***,the two split parts of DsCDV1 Rep share high identities with the Reps of Geminiviridae and Genomoviridae,respectively,indicating an evolutionary linkage with both *** analysis based on Rep or CP sequences placed DsCDV1 in a unique cluster,supporting the establishment of a new family,tentatively named Gegemycoviridae,intermediate to both ***1 significantly attenuates fungal growth and nearly erases fungal virulence when transfected into the host ***,DsCDV1 can systematically infect tobacco and pear seedlings,providing broad-spectrum resistance to fungal *** localization analysis revealed that DsCDV1 P3 is systematically localized in the plasmodesmata,while its expression in trans-complementation experiments could restore systematic infection of a movement-deficient plant virus,suggesting that P3 is a movement ***1 exhibits unique molecular and biological traits not observed in other ssDNA viruses,serving as a link between fungal and plant ssDNA viruses and presenting an evolutionary connection between ssDNA viruses and *** findings contribute to expanding our understanding of ssDNA virus diversity and evolution,offering potential biocontrol applications for managing crucial plant d

关键词： circular single-stranded DNA virus mycovirus virus evolution Genomoviridae Gegemycoviridae Diaporthe sojae circular DNA virus 1

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Cytospora pyri promotes Erwinia amylovora virulence by providing metabolites and hyphae

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Journal of Integrative Agriculture 2024年第9期 3045-3054页

作者： Tong Shen Mengdi Ye Yeping Xu Bohan Ding Hongtao Li Li Zhang Jun Wang Yanli Tian Baishi Hu Youfu Zhao College of plant Protection/Key Laboratory of Integrated Management of Crop Diseases and Pests Nanjing Agricultural University Key Laboratory of plant Quarantine Pests Monitoring and Control Ministry of Agriculture and Rural Affairs plant Protection and Quarantine Station of Xinjiang Uygur Autonomous Region Xinjiang Key Laboratory of Agricultural Biosafety Institute of Plant Protection Xinjiang Academy of Agricultural Sciences College of Agriculture Xinjiang Agricultural University plant pathology Department Washington State University

Bacterial–fungal interactions are widespread in nature. We observed that pear orchards affected by Cytospora pyri(formerly Valsa pyri) were often accompanied with Erwinia amylovora. However, the relationship of the two pathogens was unclear. The objective of this study was to determine whether the synergistic effect exists between E. amylovora and C. pyri. We first analyzed the coexistence frequencies of E. amylovora and C. pyri in pear trees. Virulence of the two pathogens, growth, physical interactions, amylovoran production, and expression of genes for amylovoran biosynthesis were conducted. Our results showed that E. amylovora and C. pyri could coexist on the same lesion and caused much more severe disease. We also found that E. amylovora could physically attach to C. pyri and the expression of amylovoran biosynthesis genes were up-regulated with fungal metabolite treatment. These results indicate that E. amylovora and C. pyri can cooperatively interact, which provides C. pyri with an opportunity to promote bacterial dispersal and production of virulence factor in E. amylovora.

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