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Molecular determinants of Antibiotic Resistance in the Costa Rican Pseudomonas aeruginosa AG1 by a Multi-omics Approach:A Review of 10 Years of Study

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Phenomics 2021年第3期1卷 129-142页

作者： Jose Arturo Molina-Mora Fernando García centro de investigación en enfermedades Tropicales(CIET)&Facultad de Microbiología Universidad de Costa RicaSan JoséCosta Rica

Pseudomonas aeruginosa AG1(PaeAG1)is a Costa Rican strain that was isolated in 2010 in a major *** strain has resistance to multiple antibiotics such asβ-lactams(including carbapenems),aminoglycosides,and ***1 is considered critical(Priority 1)due to its resistance to carbapenems,and it was the first report of a *** isolate carrying both VIM-2 and IMP-18 genes encoding for metallo-β-lactamases(MBL)enzymes(both with carbapenemase activity).Owing to these traits,we have studied this model for 10 years using diverse approaches including *** this review,we summarize the main points of the different steps that we have studied in PaeAG1:preliminary analyses of this strain at the genomic and phenomic levels revealed that this microorganism has particular features of antibiotic *** the multi-omics approach,the genome assembly was the initial step to identify the genomic determinants of this strain,includ-ing virulence factors,antibiotic resistance genes,as well as a complex accessory ***,a comparative genomic approach was implemented to define and update the phylogenetic relationship among complete *** genomes,the genomic island content in other strains,and the architecture of the two MBL-carrying ***,the proteomic profile of PaeAG1 was studied after exposure to antibiotics using 2-dimensional gel electrophoresis(2D-GE).Fourth,to study the central response to multiple perturbations in ***,i.e.,the core perturbome,a machine learning approach was *** analysis revealed biological functions and determinants that are shared by different ***,to evaluate the effects of ciprofloxacin(CIP)on PaeAG1,a growth curve comparison,differential expression analysis(RnA-Seq),and network analysis were *** the results of the core perturbome(pathways that also were found in this perturbation with CIP),it was possible to identify the“exclusive”response and determina

关键词： Pseudomonas aeruginosa PaeAG1 Antibiotic resistance Multi-omics High risk

Optimizing clarithromycin-containing therapy for Helicobacter pylori in the era of antibiotic resistance

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World Journal of Gastroenterology 2014年第30期20卷 10338-10347页

作者： Javier Molina-Infante Javier P Gisbert department of Gastroenterology Hospital San Pedro de Alcantara10003 CaceresSpain department of Gastroenterology Hospital Universitario de la PrincesaInstituto de Investigación Sanitaria Princesa and Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas28006 MadridSpain

The efficacy of triple therapy for Helicobacter pylori infection has dramatically declined over the last decade,largely related to increasing clarithromycin resistance *** a microbiological standpoint,bismuth quadruple therapy is the ideal replacement since it combines drugs for which resistance does not impair its ***,several obstacles such as availability,complexity or tolerance prevent a general implementation of bismuth quadruple therapy,so nonbismuth quadruple regimens remain the best firstline treatment in clinical practice in many geographical *** review the rationale and efficacy of several optimization tools(increasing the length of duration,high-dose acid suppression,probiotics),which have been largely evaluated over the last 5 years to increase the effectiveness of standard triple ***,we update available evidence on the effectiveness of several non-bismuth quadruple therapies(sequential,concomitant,hybrid,miscellaneous therapy),which have gained interest *** also revise evidence on the efficacy of the aforementioned optimization tools for non-bismuth quadruples schemes and,finally we provide a novel regionalized therapeutic algorithm,based on novel formulas recently developed for predicting the outcome of non-bismuth quadruple regimens,upon local antibiotic resistance rates.

关键词： Helicobacter pylori Eradication Clarithromycin Sequential Concomitant Hybrid Antibiotic resistance Bismuth

Effect of nitriding Current density on the Surface Properties and Crystallite Size of Pulsed Plasma-nitrided AISI 316L

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Journal of Materials Science and Chemical engineering 2015年第1期3卷 45-51页

作者： J. C. Díaz-Guillén E. E. Granda-Gutiérrez G. Vargas-Gutiérrez M. R. Díaz-Guillén J. A. Aguilar-Martínez L. álvarez-Contreras Corporación Mexicana de investigación en materiales S.A. de C.V.-Cátedras-COnACyT Saltillo México centro de investigación y Estudios avanzados del IPn Saltillo México GMyPQ Instituto de Investigaciones Eléctricas Cuernavaca México Universidad Autónoma de nuevo León FIME-CIIIA Apodaca México centro de investigación en materiales avanzados S.C. Chihuahua México

In this work, plasma-nitrided AISI 316L stainless steel samples were performed by ion nitriding process under pulsed direct current (DC) discharge at different current densities (1 to 2.5 mA/ cm2). The effect of nitriding current density on the size of crystalline coherently diffracting domains (crystallite size) and strain grade was investigated using X-ray diffraction (XRD) coupled with Williamson-Hall method. Additionally, hardness and wear resistance of the nitriding layer were characterized using a Vickers indenter and pin-on-disk technique respectively. Results showed a decrease in crystallite size from 99 nm for untreated samples to 1.4 nm for samples nitrided at 2.5 mA/cm2 promoted both: an increase in hardness from 226 HV25g to 1245 HV25g, and a considerably decrease in volume loss by wear effect.

关键词： Plasma nitriding Strain Crystallite Size Hardness Wear Stainless

Presenilin mutations and their impact on neuronal differentiation in Alzheimer’s disease

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neural Regeneration Research 2022年第1期17卷 31-37页

作者： Mercedes A.Hernández-Sapiéns Edwin E.Reza-Zaldívar Ana L.Márquez-Aguirre Ulises Gómez-Pinedo Jorge Matias-Guiu Ricardo R.Cevallos Juan C.Mateos-Díaz Víctor J.Sánchez-González Alejandro A.Canales-Aguirre Unidad de Evaluación Preclínica Unidad de Biotecnología Médica y FarmacéuticaCentro de Investigación y Asistencia en Tecnología y Diseño del Estado de JaliscoGuadalajaraMéxico Instituto de neurociencias IdISSCHospital Clínico San CarlosMadridEspaña Biochemistry and Molecular Genetics department University of AlabamaBirminghamAlabama Unidad de Biotecnología Industrial Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de JaliscoGuadalajaraMéxico centro Universitario de los Altos Universidad de GuadalajaraGuadalajaraMéxico

The presenilin genes(PSen1 and PSen2)are mainly responsible for causing early-onset familial Alzheimer’s disease,harboring~300 causative mutations,and representing~90%of all mutations associated with a very aggressive disease *** 1 is the catalytic core of theγ-secretase complex that conducts the intramembranous proteolytic excision of multiple transmembrane proteins like the amyloid precursor protein,notch-1,n-and E-cadherin,LRP,Syndecan,delta,Jagged,CD44,ErbB4,and *** 1 plays an essential role in neural progenitor maintenance,neurogenesis,neurite outgrowth,synaptic function,neuronal function,myelination,and ***,an imbalance caused by mutations in presenilin 1/γ-secretase might cause aberrant signaling,synaptic dysfunction,memory impairment,and increased Aβ42/Aβ40 ratio,contributing to neurodegeneration during the initial stages of Alzheimer’s disease *** review focuses on the neuronal differentiation dysregulation mediated by PSen1 mutations in Alzheimer’s ***,we emphasize the importance of Alzheimer’s disease-induced pluripotent stem cells models in analyzing PSen1 mutations implication over the early stages of the Alzheimer’s disease pathogenesis throughout neuronal differentiation impairment.

关键词： familial Alzheimer’s disease familial Alzheimer’s disease-induced pluripotent stem cells models induced pluripotent stem cells neurogenesis neuronal differentiation notch presenilin 1 PSen1 mutations γ-secretase complex

neuroprotective therapy for retinal neurodegenerative diseases by stem cell secretome

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neural Regeneration Research 2021年第1期16卷 117-118页

作者： Ricardo Usategui-Martín Ivan Fernandez-Bueno Instituto Universitario de Oftalmobiología Aplicada(IOBA) Retina GroupUniversidad de ValladolidValladolidSpain centro en Red de Medicina Regenerativa y Terapia Celular de Castilla y León Red Temática de Investigación Cooperativa en SaludOftaredInstituto de Salud Carlos IIIValladolidSpain

Retinal neurodegenerative diseases like agerelated macular degeneration,glaucoma,diabetic retinopathy or retinitis pigmentosa are the most frequent causes of incurable low vision and blindness *** had been estimated that the prevalence of these diseases varies between 1/750 and 1/5000 depending on the region,the level of consanguinity or ethnicity(na et al.,2017).The functional and structural complexity of the retina makes it susceptible to multiple types of pathogenic damage.

关键词： diseases protective degenerative

Medical plant extracts and natural compounds with a hepatoprotective effect against damage caused by antitubercular drugs: A review

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Asian Pacific Journal of Tropical Medicine 2016年第12期9卷 1116-1125页

作者： María Adelina Jiménez-Arellanes Gabriel Alfonso Gutiérrez-Rebolledo Mariana Meckes-Fischer Rosalba León-Díaz Unidad de investigación Médica en Farmacología.UMAE Hospital de Especialidades Centro Médico Nacional-Siglo XXI.Instituto Mexicano del Seguro Social

Drug-induced liver injury encompasses a spectrum of diseases ranging from mild biochemical abnormalities to acute liver failure; example of this scenery is hepatotoxicity caused by the first-line antituberculous drugs isoniazid, rifampin and pyrazinamide, which are basic for treatment of drug-sensible and drug-resistant tuberculosis. In the search for pharmacological alternatives to prevent liver damage, antitubercular drugs have been the subject of numerous studies and published reviews, a great majority of them carried out by Asian countries. At the same time, hepatoprotectors from plant source are now emerging as a possible alternative to counteract the toxic effects of these therapeutic agents. The present review aims to highlight the most recent studies on the subject, based information published in scientific databases such as Scopus and Pub Med.

关键词： Medicinal plants Hepatoprotective effect Antitubercular drugs-induced hepatotoxicity natural compounds

Synthesis of Cu nanoparticles by chemical reduction method

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Transactions of nonferrous Metals Society of China 2019年第7期29卷 1510-1515页

作者： M. S. AGUILAR R. ESPARZA G. ROSAS Instituto de investigación en Metalurgia y materiales UMSNH Morelia Michoacán 58000 Mexico centro de Física Aplicada y Tecnología Avanzada UNAM Santiago de Querétaro 76230 Mexico

Cu nanoparticles (CunPs) have been synthesized through an easy route by chemical reduction at room temperature. The Cu^2+ ions were reduced and stabilized with sodium borohydride and polyvinylpyrrolidone, respectively. The effect of the variation of the reducing agent/precursor-salt (RA/PS) ratio on the size and morphology of the CunPs was evaluated. The synthesized material was studied by ultraviolet-visible (UV-Vis) spectroscopy, X-ray diffraction (XRD), scanning electron microscopy (SEM), and transmission electron microscopy (TEM). The UV-Vis spectra showed a CunPs plasmon peak at 569 nm and another peak belonging to Cu2O at 485 nm. XRD analysis showed the fcc-Cu phase with a small amount of fcc-Cu2O compound. SEM and TEM studies displayed that small semispherical CunPs of approximately 7 nm were obtained at the RA/PS ratio of 2.6. The excess of polyvinylpyrrolidone stabilizer played an essential role in preventing CunPs oxidation. On the other side, Cu2O polyhedral particles with larger sizes up to 150 nm were identified in the RA/PS ratio range of 2.0-1.84. In addition, Cu2O particles having star morphologies with quantum confinement at their tips were obtained at the RA/PS ratio of 1.66.

关键词： Cu nanoparticles naBH4 chemical reduction polyvinylpyrrolidone stabilization Cu2O

Arachidyl amido cholanoic acid improves liver glucose and lipid homeostasis in nonalcoholic steatohepatitis via AMPK and mTOR regulation

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World Journal of Gastroenterology 2020年第34期26卷 5101-5117页

作者： David Fernández-Ramos Fernando Lopitz-Otsoa Laura delacruz-Villar Jon Bilbao Martina Pagano Laura Mosca Maider Bizkarguenaga Marina Serrano-Macia Mikel Azkargorta Marta Iruarrizaga-Lejarreta Jesús Sot Darya Tsvirkun Sebastiaan Martijn van Liempd Felix M Goni Cristina Alonso María Luz Martínez-Chantar Felix Elortza Liat Hayardeny Shelly C Lu JoséM Mato Precision Medicine and Metabolism Laboratory Centro de Investigación Cooperativa en Biociencias(CIC bioGUNE)Derio 48160BizkaiaSpain CIBERehd-centro de investigación Biomédica en Red de enfermedades hepáticas y digestivas Madrid 28029Spain department of Precision Medicine University of Campania"Luigi Vanvitelli"Naples 80138Italy Liver Disease Laboratory Centro de Investigación Cooperativa en Biociencias(CIC bioGUNE)Derio 48160Spain Proteomics Platform Centro de Investigación Cooperativa en Biociencias(CIC bioGUNE)Derio 48160Spain OWL Metabolomics Derio 48160Spain Instituto Biofisika(UPV/EHU CSIC)Leioa 48940SpainDepartamento de Bioquímica y Biología MolecularUniversidad del País VascoLeioa 48940Spain Pre-clinical and Chemistry Manufacturing and ControlsGalmed PharmaceuticalsTel Aviv 6578317Israel Metabolomics Platform Centro de Investigación Cooperativa en Biociencias(CIC bioGUNE)Derio 48160Spain Division of Digestive and Liver Diseases Cedars-Sinai Medical CenterLos AngelesCA 90048United States

BACKGROUnD Arachidyl amido cholanoic acid(Aramchol)is a potent downregulator of hepatic stearoyl-CoA desaturase 1(SCD1)protein expression that reduces liver triglycerides and fibrosis in animal models of *** a phase IIb clinical trial in patients with nonalcoholic steatohepatitis(nASH),52 wk of treatment with Aramchol reduced blood levels of glycated hemoglobin A1c,an indicator of glycemic *** To assess lipid and glucose metabolism in mouse hepatocytes and in a nASH mouse model[induced with a 0.1%methionine and choline deficient diet(0.1MCD)]after treatment with *** Isolated primary mouse hepatocytes were incubated with 20μmol/L Aramchol or vehicle for 48 ***,analyses were performed including Western blot,proteomics by mass spectrometry,and fluxomic analysis with 13C-uniformly labeled *** the in vivo part of the study,male C57BL/6J mice were randomly fed a control or 0.1MCD for 4 wk and received 1 or 5 mg/kg/d Aramchol or vehicle by intragastric gavage for the last 2 *** metabolomics were assessed using ultra-high-performance liquid chromatography-time of flight-MS for the determination of glucose metabolism-related *** Combination of proteomics and Western blot analyses showed increased AMPK activity while the activity of nutrient sensor mTORC1 was decreased by Aramchol in *** translated into changes in the content of their downstream targets including proteins involved in fatty acid(FA)synthesis and oxidation[PACCα/β(S79),SCD1,CPT1A/B,HADHA,and HADHB],oxidative phosphorylation(nDUFA9,nDUFB11,nDUFS1,nDUFV1,ETFDH,and UQCRC2),tricarboxylic acid(TCA)cycle(MDH2,SUCLA2,and SUCLG2),and ribosome(P-p70S6K[T389]and P-S6[S235/S236]).Flux experiments with 13Cuniformely labeled glucose showed that TCA cycle cataplerosis was reduced by Aramchol in hepatocytes,as indicated by the increase in the number of rounds that malate remained in the TCA ***,liver metabolomic analysis showed

关键词： nonalcoholic fatty liver disease Steatohepatitis Methionine and choline deficient diet Tricarboxylic acid cycle Hemoglobin A1c Stearoyl-CoA desaturase 1

new insights into the relevance of mobile DnA to cancer resistance in blind mole rats:new lessons for cancer therapy

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Cellular & Molecular Immunology 2022年第4期19卷 458-459页

作者： Victor M.Arce Jose A.Costoya Molecular Oncology Laboratory MOL Departamento de FisioloxíaCentro Singular de Investigación en Medicina Molecular e Enfermidades Crónicas(CiMUS)Facultade de MedicinaUniversidade de Santiago de CompostelaInstituto de Investigación Sanitaria de Santiago de Compostela(IDIS)15782Santiago de CompostelaSpain

Although mammals differ substantially in their cancer incidence rates and in the importance of age as a cancer risk factor,there is a scaling of cancer incidence to the lifespan in most *** evolution has selected strategies that maximize reproductive success,which include the development of efficient mechanisms to defer the initiation of cancer until postreproductive age[1].Owing to this,cancers are very rare among wild animals(which do not typically live beyond their reproductive ages).

关键词： cancer insight resistance