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Degradation and resynthesis of chlorophyll during increased oxidative stress and prolonged darkness differ between annual and perennial flax(Linum L.)

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Oil Crop Science 2024年第2期9卷 121-130页

作者： Kenyon J. Nisbett Abida Alokozai Su Hyun Elizabeth Ko G. Adam Mott Jason C.L. Browna Department of Biological Sciences University of Toronto ScarboroughTorontoONCanada Department of Cell&Systems Biology University of TorontoTorontoONCanada centre for the analysis of genome evolution&function University of TorontoTorontoONCanada

Among plants,there is considerable variation in lifespan:annuals live less than one year,whereas perennials live for several years,with the longest-living perennial having survived 43,600 *** proposed by the Disposable Soma Theory,this lifespan variation among plants likely reflects differential investment of limited energy and nutrient resources,with perennials investing more energy and nutrients into biomolecular maintenance compared to annuals in order to ensure persistence over multiple *** differential investment may be particularly important during periods of exogenous stress,which are known to accelerate biomolecular *** present study evaluated this hypothesis using annual and perennial flax(Linum L.)subjected to two exogenous stressors—increased oxidative stress(i.e.,foliar H2O2spraying)and complete prolonged *** chlorophyll has been shown to exhibit degradation in response to changes in environmental conditions,we utilized changes in chlorophyll levels during and after periods of exogenous stress to evaluate our *** predicted that i)perennials would exhibit a slower rate of chlorophyll degradation during exposure to exogenous stressors compared to annuals,and ii)perennials would exhibit a faster rate of chlorophyll resynthesis following such exposure compared to *** levels before,during,and after exposure to both exogenous stressors were measured in two separate trails,once using image colour analysis and once using *** chlorophyll degradation rates in response to oxidative stress did not differ between annuals and perennials,contrary to our predictions,chlorophyll resynthesis rates following such exposure were significantly higher in perennials,as *** plants were subjected to complete prolonged darkness,chlorophyll degradation rates were significantly lower in perennials than annuals,as predicted;however,when plants were subsequently reintroduced to natural photoperiod,ch

关键词： Ageing Life history Maximum lifespan Oxidative stress Somatic maintenance

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Mixing and matching SMXL proteins to fine-tune strigolactone responses

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Molecular Plant 2024年第8期17卷 1167-1169页

作者： Jenna E.Hountalas Shelley Lumba Department of Cell&Systems Biology University of Toronto25 Willcocks StreetTorontoON M5S 3B2Canada centre for the analysis of genome evolution and function University of Toronto25 Willcocks StreetTorontoON M5S 3B2Canada

A common mechanism in plant hormone signaling is hormonedependent degradation of downstream *** the case of strigolactone(SL)signaling,one group of SUPPRESSOR OF MORE AXILLARY BRANCHES 2(MAX2)1-LIKE(SMXL)proteins undergoes hormone-dependent degradation,while another does not.A recent publication in Molecular Plant by Li et al.(2024)illustrates that mixing and matching a SMXL resistant to SL degradation with a SMXL sensitive to SL degradation finely tunes SL *** phenomenon could reflect a naturally occurring negative transdominance,which is a dominantnegative effect arising not from a mutant allele of the same gene but rather from a different gene altogether(Veitia,2007).This trans-acting protein attenuates SL-dependent degradation of the SMXL *** findings have exciting implications for how different SMXL combinations could result in a gradient of SL responses.

关键词： complex. matching degradation

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analysis of Gene Expression Patterns during Seed Coat Development in Arabidopsis

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Molecular Plant 2011年第6期4卷 1074-1091页

作者： Gillian Dean YongGuo Cao DaoQuan Xiang Nicholas J. Provart Larissa Ramsay Abdul Ahad Rick White Gopalan Selvaraj Raju Datla George Haughn Department of Botany University of British Columbia 6270 University Blvd Vancouver BC V6T 1Z4 Canada National Research Council of Canada Plant Biotechnology Institute 110 Gymnasium Place Saskatoon SK S7N owg Canada Department of Cell and Systems Biology/centre for the analysis of genome evolution and function University of Toronto 25 Willcocks St Toronto ON M5S 3B2 Canada Department of Statistics University of British Columbia 6356 Agricultural Road Vancouver BC V6T 1Z2 Canada

The seed coat is important for embryo protection, seed hydration, and dispersal. Seed coat composition is also of interest to the agricultural sector, since it impacts the nutritional value for humans and livestock alike. Although some seed coat genes have been identified, the developmental pathways controlling seed coat development are not completely elucidated, and a global genetic program associated with seed coat development has not been reported. This study uses a combination of genetic and genomic approaches in Arabidopsis thaliana to begin to address these knowledge gaps. Seed coat development is a complex process whereby the integuments of the ovule differentiate into specialized cell types. In Arabidopsis, the outermost layer of cells secretes mucilage into the apoplast and develops a secondary cell wall known as a columella. The layer beneath the epidermis, the palisade, synthesizes a secondary cell wall on its inner tangential side. The innermost layer （the pigmented layer or endothelium） produces proanthocyanidins that condense into tannins and oxidize, giving a brown color to mature seeds. Genetic separation of these cell layers was achieved using the ap2-7 and tt16-1 mutants, where the epidermis/palisade and the endothelium do not develop respectively. This genetic ablation was exploited to examine the developmental programs of these cell types by isolating and collecting seed coats at key tran- sitions during development and performing global gene expression analysis. The data indicate that the developmental programs of the epidermis and the pigmented layer proceed relatively independently. Global expression datasets that can be used for identification of new gene candidates for seed coat development were generated. These dataset provide a comprehensive expression profile for developing seed coats in Arabidopsis, and should provide a useful resource and reference for other seed systems.

关键词： Seed coat microarray APETALA2 TRANSPARENT TESTA16 mucilage pectin secondary cell wall pigmentedlayer proanthocyanidin.

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High genetic diversity in the endangered and narrowly distributed amphibian species Leptobrachium leishanense

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Integrative Zoology 2015年第5期10卷 465-481页

作者： Wei ZHANG Zhenhua LUO Mian ZHAO Hua WU Institute of evolution and Ecology International Research Centre of Ecology and EnvironmentSchool of Life SciencesCentral China Normal UniversityWuhanChina

Threatened species typically have a small or declining population size,which make them highly susceptible to loss of genetic diversity through genetic drift and *** diversity determines the evolutionary potential of a species;therefore,maintaining the genetic diversity of threatened species is essential for their *** this study,we assessed the genetic diversity of the adaptive major histocompatibility complex(MHC)genes in an endangered and narrowly distributed amphibian species,Leptobrachium leishanense in Southwest *** compared the genetic variation of MHC class I genes with that observed in neutral markers(5 microsatellite loci and cytochrome b gene)to elucidate the relative roles of genetic drift and natural selection in shaping the current MHC polymorphism in this *** found a high level of genetic diversity in this population at both MHC and neutral markers compared with other threatened amphibian *** positive selection was evident in the MHC class I *** higher allelic richness in MHC markers compared with that of microsatellite loci suggests that selection rather than genetic drift plays a prominent role in shaping the MHC variation pattern,as drift can affect all the genome in a similar way but selection directly targets MHC *** demographic analysis revealed no recent bottleneck events in ***,additional population decline will accelerate the dangerous status for this *** suggest that the conservation management of *** should concentrate on maximizing the retention of genetic diversity through preventing their continuous population *** their living habitats and forbidding illegal hunting are the most important measures for conservation of ***.

关键词： demography process genetic diversity major histocompatibility complex natural selection Leptobrachium leishanense

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The Role of Cyclic Nucleotide-Gated Ion Channels in Plant Immunity

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Molecular Plant 2011年第3期4卷 442-452页

作者： Wolfgang Moeder William Urquhart Huoi Ung Keiko Yoshioka Department of Cell and Systems Biology University of Toronto 25 Willcocks Street Toronto ON M5S 3B2 Canada Center for the analysis of genome evolution and function (CAGEF) University of Toronto 25 Willcocks Street Toronto ON M5S 3B2 Canada

Since the first plant cyclic nucleotide-gated ion channel （CNGC）, HvCBT1, was identified as a calmodulin bind- ing protein, more than a decade has passed and a substantial amount of work has been done to understand the molecular nature and function of these channel proteins. Based on electrophysiological and heterologous expression analyses, plant CNGCs function as non-selective cation channels and, so far, their biological roles have been reported in defense responses, development, and ion homeostasis. Forward genetic approaches identified four AtCNGCs （AtCNGC2, 4, 11, and 12） to be involved in plant immunity, as null mutants for AtCNGC2, 4, 11, and 12 as well as a gain-of- function mutant for AtCNGC11 and 12 exhibited alterations in defense responses. Since ion flux changes have been reported as one of the early events upon pathogen recognition and also are an essential component for the activation of defense responses, the involvement of CNGCs in these ion flux changes has been suggested. However, the recent detailed characterization of null mutants suggested a more complex involvement of this channel family. In this review, we focus on the discoveries and character- ization of these CNGC mutants and discuss possible roles of CNGCs as components in plant immunity.

关键词： CNGC cyclic nucleotide-gated ion channel plant immunity DND1 DND2 HLM1 CPR22 ED51.

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A new record of Sebastes koreanus from China based on morphological characters and DNA barcoding

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Chinese Journal of Oceanology and Limnology 2015年第3期33卷 590-596页

作者：方亚璐 KAI Yoshiaki YANAGIMOTO Takashi 宋娜高天翔 Institute of evolution and Marine Biodiversity Ocean University of China Maizuru Fisheries Research Station Field Science Education and Research Centre Kyoto University National Research Institute of Fisheries Science Fishery College Zhejiang Ocean University

A new record of Sebastes koreanus （Kim and Lee, 1994） was documented based on morphological characters and DNA barcoding. Fifty-six Sebastes specimens were collected from the coastal waters of northern China. Samples were identified as S. koreanus based on morphological characters. The coloration and morphometric measurements were consistent with those described from specimens collected in South Korea. In this study, specimens had the following morphological characteristics： light brown body with dark stripes and tiny dark spots, 4-5 wide indistinct vertical patterns on the side, 2 radial stripes behind and below the eyes, 1 large dark blotch on the opercle. Additionally, the following meristie characters were recorded： dorsal fin XIV-13, pectoral fin 16, anal fin III-6-7, pelvic fin [-5, lateral line scales 29-30, and vertebrae 26. The fragment of cytochrome oxidase subunit I （CO1） gene of mitochondrial DNA was sequenced for phylogenetic analysis. The mean genetic distance within the species was 0.3%. Net genetic distances between S. koreanus and other Sebastes species ranged from 3.1% to 7.6%, which was greater than the threshold for species delimitation. The phylogenetic analysis strongly supports the validity of S. koreanus in China at the genetic level. The origion, evolution, patterns of speciation and unique features in genome divergence among primate lineages of this species still need future directions of research.

关键词： Sebastes koreanus coastal waters of northern China new record morphological characters cytochrome oxidase subunit I (CO1)

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Tung Tree(Vernicia fordii) genome Provides A Resource for Understanding genome evolution and Improved Oil Production

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Genomics, Proteomics & Bioinformatics 2019年第6期17卷 558-575页

作者： Lin Zhang Meilan Liu Hongxu Long Wei Dong Asher Pasha Eddi Esteban Wenying Li Xiaoming Yang Ze Li Aixia Song Duo Ran Guang Zhao Yanling Zeng Hao Chen Ming Zou Jingjing Li Fan Liang Meili Xie Jiang Hu Depeng Wang Heping Cao Nicholas J.Provart Liangsheng Zhang Xiaofeng Tan Key Laboratory of Cultivation and Protection for Non-Wood Forest Trees Ministry of EducationCentral South University of Forestry and TechnologyChangsha 410004China Key Lab of Non-wood Forest Products of State Forestry Administration College of ForestryCentral South University of Forestry and TechnologyChangsha 410004China Department of Cell and Systems Biology/centre for the analysis of genome evolution and function University of TorontoTorontoOntario M5S 3B2Canada State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops Fujian Provincial Key Laboratory of Haixia Applied Plant Systems BiologyFujian Agriculture and Forestry UniversityFuzhou 350002China College of Forestry Nanjing Forestry UniversityNanjing 210037China Nextomics Biosciences Co. Wuhan 430073China Oil Crop Research Institute Chinese Academy of Agricultural SciencesWuhan 430062China US Department of Agriculture Agricultural Research ServiceSouthern Regional Research CenterNew OrleansLA 70124USA

Tung tree(Vernicia fordii) is an economically important woody oil plant that produces tung oil rich in eleostearic acid. Here, we report a high-quality chromosome-scale genome sequence of tung tree. The genome sequence was assembled by combining Illumina short reads, Pacific Biosciences single-molecule real-time long reads, and Hi-C sequencing data. The size of tung tree genome is 1.12 Gb, with 28,422 predicted genes and over 73% repeat sequences. The V. fordii underwent an ancient genome triplication event shared by core eudicots but no further wholegenome duplication in the subsequent ca. 34.55 million years of evolutionary history of the tung tree lineage. Insertion time analysis revealed that repeat-driven genome expansion might have arisen as a result of long-standing long terminal repeat retrotransposon bursts and lack of efficient DNA deletion mechanisms. The genome harbors 88 resistance genes encoding nucleotide-binding sites;17 of these genes may be involved in early-infection stage of Fusarium wilt resistance. Further, 651 oil-related genes were identified, 88 of which are predicted to be directly involved in tung oil biosynthesis. Relatively few phosphoenolpyruvate carboxykinase genes, and synergistic effects between transcription factors and oil biosynthesis-related genes might contribute to the high oil content of tung seed. The tung tree genome constitutes a valuable resource for understanding genome evolution, as well as for molecular breeding and genetic improvements for oil production.

关键词： Tung tree genome Tung oil genome evolution Electronic fluorescent pictographic browser Oil biosynthesis

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analysis and validation of genome-specific DNA variations in 5′ flanking conserved sequences of wheat low-molecular-weight glutenin subunit genes

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Science China Life Sciences 2006年第4期49卷 322-331页

作者： BAUM Bernard NEVO Eviatar Agriculture & Agri-Food Canada Eastern Cereal and Oilseed Research Centre Ottawa K1A 0C6 Canada Institute of evolution University of Haifa Mt. Carmel Haifa 31905 Israel

The thirty-three 5′ flanking conserved sequences of the known low-molecular-weight subunit (LMW-GS) genes have been divided into eight clusters, which was in agreement with the classification based on the deduced N-terminal protein sequences. The DNA polymorphism between the eight clusters was obtained by sequence alignment, and a total of 34 polymorphic positions were observed in the approximately 200 bp regions, among which 18 polymorphic positions were candidate SNPs. Seven cluster-specific primer sets were designed for seven out of eight clusters containing cluster-specific bases, with which the genomic DNA of the ditelosomic lines of group 1 chromosomes of a wheat variety ‘Chinese Spring’ was employed to carry out chromosome assignment. The subse-quent cloning and DNA sequencing of PCR fragments validated the sequences specificity of the 5′ flanking conserved sequences between LMW-GS gene groups in different genomes. These results suggested that the coding and 5′ flanking regions of LMW-GS genes are likely to have evolved in a concerted fashion. The seven primer sets developed in this study could be used to isolate the com-plete ORFs of seven groups of LMW-GS genes, respectively, and therefore possess great value for further research in the contributions of a single LMW-GS gene to wheat quality in the complex genetic background and the efficient selections of quality-related components in breeding programs.

关键词： wheat LMW-GS gene 5′ flanking sequence DNA polymorphism SNP gene cloning.

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High-throughput calculation-based rational design of Fe-doped MoS_(2) nanosheets for electrocatalytic p H-universal overall water splitting

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Journal of Energy Chemistry 2024年第4期91卷 194-202页

作者： Guangtong Hai Xiangdong Xue Zhenyu Wu Canyang Zhang Xin Liu Xiubing Huang Institute of Zhejiang University-Quzhou Zhejiang UniversityQuzhou 324000ZhejiangChina Beijing Key Laboratory of Membrane Materials and Engineering Department of Chemical EngineeringTsinghua UniversityBeijing 100084China Beijing Advanced Innovation Center for Materials genome Engineering Beijing Key Laboratory of Function Materials for Molecule&Structure ConstructionSchool of Materials Science and EngineeringUniversity of Science and TechnologyBeijing 100083China centreÉnergie Matériaux et Télécommunications(EMT) Institut national de la recherche scientifique(INRS)Varennes J3X1P7QuébecCanada

Electrocatalytic water splitting is crucial for H2generation via hydrogen evolution reaction(HER)but subject to the sluggish dynamics of oxygen evolution reaction(OER).In this work,single Fe atomdoped MoS_(2)nanosheets(SFe-DMNs)were prepared based on the high-throughput density functional theory(DFT)calculation *** to the synergistic effect between Fe atom and MoS_(2)and optimized intermediate binding energy,the SFe-DMNs could deliver outstanding activity for both HER and *** assembled into a two-electrode electrolytic cell,the SFe-DMNs could achieve the current density of 50 mA cm^(-2)at a low cell voltage of 1.55 V under neutral *** results not only confirmed the effectiveness of high-throughput screening,but also revealed the excellent activity and thus the potential applications in fuel cells of SFe-DMNs.

关键词： High-throughput calculation Overall water splitting Single atom doped catalyst Molybdenum disulfide nanosheet

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Landscape distribution of food and nesting sites affect larval diet and nest size, but not abundance of Osmia bicornis

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Insect Science 2016年第5期23卷 746-753页

作者： Valerie Coudrain Sarah Rittiner Felix Herzog Willy Tinner Martin H. Entling Research Station ART Zurich CH-8046 Switzerland Institute of Ecology and evolution University of Bern Bern CH-3012 Switzerland Institute for Environmental Sciences University of Koblenz-Landau LandaulPfalz D-76829 Germany Institute of Plant Sciences and Oeschger centre for Climate Change Research University of Bern Bern CH-3013 Switzerland

Habitat fragmentation is a major threat for beneficial organisms and the ecosys- tem services they provide. Multiple-habitat users such as wild bees depend on both nesting and foraging habitat. Thus, they may be affected by the fragmentation of at least two habitat types. We investigated the effects of landscape-scale amount of and patch isolation from both nesting habitat （woody plants） and foraging habitat （specific pollen sources） on the abundance and diet of Osmia bicornis L. Trap-nests of O. bicornis were studied in 30 agricultural landscapes of the Swiss Plateau. Nesting and foraging habitats were mapped in a radius of 500 m around the sites. Pollen composition of larval diet changed as isolation to the main pollen source, Ranunculus, increased, suggesting that （9. bicornis adapted its foraging strategy in function of the nest proximity to main pollen sources. Abundance of O. bicornis was neither related to isolation or amount of nesting habitat nor to isolation or abundance of food plants. Surprisingly, nests ofO. bicornis contained fewer larvae in sites at forest edge compared to isolated sites, possibly due to higher parasitism risk. This study indicates that O. bicornis can nest in a variety of situations by compensating scarcity of its main larval food by exploiting alternative food sources.

关键词： diet fragmentation habitat amount habitat isolation Hymenoptera Megachilidae pollen analysis

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