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Advances in Bioscience and biotechnology 2020年第2期11卷 60-71页

作者： Adenes Teixeira Alves Lucieta Guerreiro Martorano Gelson Dias Florentino Dimas José Lasmar íres Paula de Andrade Miranda Leila Sheila Lisboa Jamal da Silva Chaar Federal University of amazonas-UFAM Manaus Amazonas Brazil Brazilian Agricultural Research Corporation (EMBRAPA) Eastern amazon (CPATU/NAPT) Santarém Pará Brazil biodiversity and biotechnology network of the Legal amazon (bionorte) Belém Pará Brazil National Institute for amazon Research (INPA) Manaus Amazonas Brazil Geoprocessing Belém Pará Brazil.

The objective of this work was to evaluate the spatial and temporal dynamics of the process of combustion of fruits of the Brazil nut tree (Bertholletia excelsa Bonpl.) using thermographic images in order to characterize the potential of this biomass as an energy source for use in ceramic kilns. Infrared thermography was used as a diagnostic tool, and the trial was conducted in November 2018, in two blocks with two repetitions in each, with the fruits organized so that the cavity was oriented upward and also downward. The thermograms were analyzed using Flir Tools (6.3 v). The temperatures were the highest in the center of the fruits (>160°C), attaining incandescence in 6 min 30 s. Heat was propagated from the center to the edge, and this process was quicker for fruits with their cavities pointed upward. A second order polynomial model explained combustion time with a maximum duration of 7.2 minutes. The thermographic diagnostic has the potential to be used in management strategies for this biomass as an energy source, thus aggregating value to the residuals that are normally left in the forest during harvest by extractivists.

关键词： Residual Biomass Thermographic Patterns Non-Wood Forest Products

Contribution of the Incorporation of Poultry Litter and Limestone for the Fertility of Sandy Soil in the Brazilian amazon

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Natural Resources 2014年第15期5卷 958-967页

作者： Juliana Guimaraes Gerola Juan Ricardo Rocha Stella Cristiani Goncalves Matoso Leandro Dias da Silva Agricultural Engineering Federal Institute of RondoniaCampus Colorado do OesteColorado do OesteBrazil biodiversity and biotechnology of the amazon at the bionorte network ManausBrazil Soil Science Federal Institute of RondoniaCampus Colorado do OesteColorado do OesteBrazil Soil Laboratory Federal Institute of RondoniaCampus Colorado do OesteColorado do OesteBrazil

Sandy soils have limitations for growing plants. In general, they have low fertility, high toxic aluminum content and low organic matter. The organic matter is responsible for most of the cation exchange capacity of these soils. Added to this, the low clay content and the structure of these soils with large volumes of macropores, determine their low water retention. An alternative is the incorporation of organic waste combined with the practice of liming. Thus, the aim of this study was to evaluate the contribution of the incorporation of poultry litter and limestone in the fertility of sandy soils in the Brazilian amazon. The experiment was conducted in Colorado do Oeste, RO, on a Quartzipsamment in a completely randomized block design in a 4 × 4 × 2 factorial scheme, corresponding to four doses of poultry litter (0, 5, 10 and 15 mg·ha-1), its incorporation for four times (0, 75, 110 and 145 days) in the presence and absence of 2 mg·ha-1 of limestone, with six replications. The incorporation of 15 mg·ha-1 of poultry litter combined with 2 mg·ha-1 of limestone for 75 days after the merger raises several components of Quartzipsamment fertility, mainly being the availability of phosphorus.

关键词： Quartzipsamments Organic Waste Liming

Evaluation of Quantum Chemical Methods and Basis Sets Applied in the Molecular Modeling of Artemisinin

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Computational Molecular Bioscience 2013年第3期3卷 66-79页

作者： Cleydson B. R. dos Santos Cleison C. Lobato Josinete B. Vieira Davi S. B. Brasil Alaan U. Brito Williams J. C. Macêdo José Carlos T. Carvalho José C. Pinheiro Laboratory of Modelling and Computational Chemistry Federal University of Amapá Macapá Brazil Laboratory of Theoretical and Computational Chemistry Institute of Exact and Natural Sciences Federal University of Pará Belém Brazil Postgraduate Program in biotechnology and biodiversity-network bionorte Campus Universitário Marcos Zero Macapá Brazil

In this paper, we evaluate semiempirical methods (AM1, PM3, and ZINDO), HF and DFT (B3LYP) in different basis sets to determine which method best describes the sign and magnitude of the geometrical parameters of artemisinin in the region of the endoperoxide ring compared to crystallographic data. We also classify these methods using statistical analysis. The results of PCA were based on three main components, explaining 98.0539% of the total variance, for the geometrical parameters C3O13, O1O2C3, O13C12C12a, and O2C3O13C12. The DFT method (B3LYP) corresponded well with the experimental data in the hierarchical cluster analysis (HCA). The experimental and theoretical angles were analyzed by simple linear regression, and statistical parameters (correlation coefficients, significance, and predictability) were evaluated to determine the accuracy of the calculations. The statistical analysis exhibited a good correlation and high predictive power for the DFT (B3LYP) method in the 6-31G** basis set.

关键词： Artemisinin Molecular Modeling Quantum Chemical Methods Statistical Analysis B3LYP/6-31G**

Application of Hartree-Fock Method for Modeling of Bioactive Molecules Using SAR and QSPR

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Computational Molecular Bioscience 2014年第1期4卷 1-24页

作者： Cleydson B. R. Santos Cleison C. Lobato Francinaldo S. Braga Sílvia S. S. Morais Cesar F. Santos Caio P. Fernandes Davi S. B. Brasil Lorane I. S. Hage-Melim Williams J. C. Macêdo José C. T. Carvalho Laboratory of Modeling and Computational Chemistry Federal University of Amap&#225 Macap&#225 Brazil Laboratory of Modeling and Computational Chemistry Federal University of Amap&#225 Macap&#225 Brazil Laboratory of Drug Research School of Pharmaceutical Sciences Federal University of Amap&#225 Macap&#225 Brazil Laboratory of Modeling and Computational Chemistry Federal University of Amap&#225 Macap&#225 Brazil Institute of Technology Federal University of Par&#225 Bel&#233m Brazil Laboratory of Modeling and Computational Chemistry Federal University of Amap&#225 Macap&#225 Brazil Postgraduate Program in biotechnology and biodiversity-network bionorte Campus Universit&#225rio Marco Zero Macap&#225 Brazil Laboratory of Modeling and Computational Chemistry Federal University of Amap&#225 Macap&#225 Brazil Postgraduate Program in biotechnology and biodiversity-network bionorte Campus Universit&#225rio Marco Zero Macap&#225 Brazil Laboratory of Drug Research School of Pharmaceutical Sciences Federal University of Amap&#225 Macap&#225 Brazil Laboratory of Modeling and Computational Chemistry Federal University of Amap&#225 Macap&#225 Brazil Postgraduate Program in biotechnology and biodiversity-network bionorte Campus Universit&#225rio Marco Zero Macap&#225 Brazil Laboratory of Drug Research School of Pharmaceutical Sciences Federal University of Amap&#225 Macap&#225 Brazil Laboratory of Statistical and Computational Modeling University of the State of Amap&#225 Macap&#225 Brazil

The central importance of quantum chemistry is to obtain solutions of the Schr?dinger equation for the accurate determination of the properties of atomic and molecular systems that occurred from the calculation of wave functions accurate for many diatomic and polyatomic molecules, using Self Consistent Field method (SCF). The application of quantum chemical methods in the study and planning of bioactive compounds has become a common practice nowadays. From the point of view of planning it is important to note, when it comes to the use of molecular modeling, a collective term that refers to methods and theoretical modeling and computational techniques to mimic the behavior of molecules, not intend to reach a bioactive molecule simply through the use of computer programs. The choice of method for energy minimization depends on factors related to the size of the molecule, parameters of availability, stored data and computational resources. Molecular models generated by the computer are the result of mathematical equations that estimate the positions and properties of the electrons and nuclei, the calculations exploit experimentally, the characteristics of a structure, providing a new perspective on the molecule. In this work we show that studies of Highest Occupied Molecular Orbital Energy (HOMO), Low Unoccupied Molecular Orbital Energy (LUMO) and Map of molecular electrostatic potential (MEP) using Hatree-Fock method with different basis sets (HF/3-21G*, HF/3-21G**, HF/6-31G, HF/6-31G*, HF/6-31G** and HF/6-311G), that are of great importance in modern chemistry, biochemistry, molecular biology, and other fields of knowledge of health sciences. In order to obtain a significant correlation, it is essential that the descriptors are used appropriately. Thus, the quantum chemical calculations are an attractive source of new molecular descriptors that can, in principle, express all the geometrical and electronic properties of molecules and their interactions with biological

关键词： Molecular Modeling Meps Maps Orbital Frontier Quantum Chemical Methods

Fungal diversity notes 1036-1150:taxonomic and phylogenetic contributions on genera and species of fungal taxa

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Fungal Diversity 2019年第3期96卷 1-242页

作者： Kevin D.Hyde Danushka S.Tennakoon Rajesh Jeewon DJayarama Bhat Sajeewa S.N.Maharachchikumbura Walter Rossi Marco Leonardi Hyang Burm Lee Hye Yeon Mun Jos Houbraken Thuong T.T.Nguyen Sun Jeong Jeon Jens Christian Frisvad Dhanushka N.Wanasinghe Robert Lucking Andre Aptroot Marcela E.S.Caceres Samantha C.Karunarathna Sinang Hongsanan Rungtiwa Phookamsak Nimali Ide Silva Kasun M.Thambugala Ruvishika S.Jayawardena Indunil C.Senanayake Saranyaphat Boonmee Jie Chen Zong-Long Luo Chayanard Phukhamsakda Olinto L.Pereira Vanessa P.Abreu Andre Wilson Campos Rosado Buyck Bart Emile Randrianjohany Vale rie Hofstetter Tatiana B.Gibertoni Adriene Mayrada Silva Soares Helio Longoni Plautz Jr Helen Maria Pontes Sotao William Kalhy Silva Xavier Jadson Diogo Pereira Bezerra Thays Gabrielle Linsde Oliveira Cristina Mariade Souza-Motta Oliane Maria Correia Magalhaes Digvijayini Bundhun Dulanjalee Harishchandra Ishara S.Manawasinghe Wei Dong Sheng-Nan Zhang Dan-Feng Bao Milan C.Samarakoon Dhandevi Pem Anuruddha Karunarathna Chuan-Gen Lin Jing Yang Rekhani H.Perera Vinit Kumar Shi-Ke Huang Monika C.Dayarathne Anusha H.Ekanayaka Subashini C.Jayasiri Yuanpin Xiao Sirinapa Konta Tuula Niskanen Kare Liimatainen Yu-Cheng Dai Xiao-Hong Ji Xue-Mei Tian Armin Mesic Sanjay K.Singh Kunthida Phutthacharoen Lei Cai Touny Sorvongxay Vinodhini Thiyagaraja Chada Norphanphoun Napalai Chaiwan Yong-Zhong Lu Hong-Bo Jiang Jin-Feng Zhang Pranami D.Abeywickrama Janith V.S.Aluthmuhandiram Rashika S.Brahmanage Ming Zeng Thilini Chethana Deping Wei Martina Reblova Jacques Fournier Jana Nekvindova Renan do Nascimento Barbosa Jose Ewerton Felintodos Santos Neiva Tintide Oliveira Guo-Jie Li Damien Ertz Qiu-Ju Shang Alan J.L.Phillips Chang-Hsin Kuo Erio Camporesi Timur S.Bulgakov Saisamorn Lumyong E.B.Gareth Jones Putarak Chomnunti Eleni Gentekaki Frank Bungartz Xiang-Yu Zeng Sally Fryar Zdenko Tkalcec Junmin Liang Guangshuo Li Ting-Chi Wen Paras Nath Singh Yusufjon Gafforov Itthayakorn Promputtha Erandi Yasanthika Ishani D.Goonasekara Rui-Lin Zhao Qi Zhao Paul M Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanPeople’s Republic of China School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand East and Central Asia Regional Office World Agroforestry Centre(ICRAF)Kunming 650201YunnanPeople’s Republic of China Department of Biology Faculty of ScienceChiang Mai UniversityChiang Mai 50200Thailand Mushroom Research Foundation 128 M.3 Ban Pa Deng T.Pa PaeA.Mae TaengChiang Mai 50150Thailand Department of Plant Medicine National Chiayi University300 Syuefu RoadChiayi City 60004TaiwanPeople’s Republic of China Department of Health Sciences Faculty of ScienceUniversity of MauritiusReduitMauritius Formerly Department of Botany Goa UniversityGoaIndia No.128/1-J Azad Housing SocietyCurcaGoa Velha 403108India Department of Crop Sciences College of Agricultural and Marine SciencesSultan Qaboos UniversityPO Box 8123 Al KhoudOman Sect.Environmental Sciences Dept.MeSVAUniversity of L’Aquila67100 CoppitoAQItaly Division of Food Technology Biotechnology&AgrochemistryCollege of Agriculture&Life SciencesChonnam National UniversityGwangju 61186Korea Fungal Resources Research Division NNIBRSangju-si 37242Korea Westerdijk Fungal biodiversity Institute Uppsalalaan 83584 CT UtrechtThe Netherlands Department of biotechnology and Biomedicine DTUBioengineeringTechnical University of Denmark2800 Kongens LyngbyDenmark Botanischer Garten und Botanisches Museum Berlin Freie Universitat BerlinKonigin-Luise-StraßBe 6-814195 BerlinGermany Laboratorio de Botanica/Liquenologia Instituto de BiocienciasUniversidade Federal de Mato Grosso do SulAvenida Costa e Silva s/nBairro UniversitarioCampo GrandeMatto Grosso do Sul CEP 79070-900Brazil Departamento de Biociencias Universidade Federal de SergipeItabaianaSergipe CEP:49500-000Brazil Shenzhen Key Laboratory of Microbial

This article is the tenth series of the Fungal Diversity Notes,where 114 taxa distributed in three phyla,ten classes,30 orders and 53 families are described and *** described in the present study include one new family(*** in Dothideomycetes),five new genera(Caatingomyces,Cryptoschizotrema,Neoacladium,Paramassaria and Trochilispora)and 71 new species,(*** thailandica,Amniculicola aquatica,***,Angustimassarina sylvatica,Blackwellomyces lateris,Boubovia gelatinosa,Buellia viridula,Caatingomyces brasiliensis,Calophoma humuli,Camarosporidiella mori,Canalisporium dehongense,Cantharellus brunneopallidus,***,Castanediella meliponae,Coprinopsis psammophila,Cordyceps succavus,Cortinarius minusculus,***,Diaporthe italiana,***,Diatrypella delonicis,Dictyocheirospora aquadulcis,***,Digitodesmium chiangmaiense,Distoseptispora dehongensis,***,Dothiorella styphnolobii,Ellisembia aurea,Falciformispora aquatic,Fomitiporia carpinea,***,Grammothele aurantiaca,***,Hermatomyces bauhiniae,Jahnula queenslandica,Kamalomyces mangrovei,Lecidella yunnanensis,Micarea squamulosa,Muriphaeosphaeria angustifoliae,Neoacladium indicum,Neodidymelliopsis sambuci,Neosetophoma miscanthi,***,Nodulosphaeria aquilegiae,***,Paramassaria samaneae,Penicillium circulare,***,***-pumilae,***,***,Phaeoisaria siamensis,Phaeopoacea asparagicola,Phaeosphaeria penniseti,Plectocarpon galapagoense,Porina sorediata,Pseudoberkleasmium chiangmaiense,Pyrenochaetopsis sinensis,Rhizophydium koreanum,Russula prasina,Sporoschisma chiangraiense,Stigmatomyces chamaemyiae,***,***,***,***,Thysanorea uniseptata,Torula breviconidiophora,***,Trochilispora schefflerae and Vaginatispora palmae).Further,twelve new combinations(*** cryptotrema,Prolixandromyces australi,***,***,***,P.

关键词： 71 new taxa Ascomycota Basidiomycota Dothideomycetes Eurotiomycetes Lecanoromycetes Leotiomycetes Pezizomycetes Phylogeny Taxonomy