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Oxidation of emerging organic contaminants by in-situ H_(2)O_(2) fenton system

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Green Energy & Environment 2024年第3期9卷 417-434页

作者： Yuqin Ni Chuxiang Zhou Mingyang Xing Yi Zhou State Environmental Protection Key lab of Environmental Risk Assessment and Control on Chemical Processes School of Resources&Environmental EngineeringEast China University of Science and TechnologyShanghai200237China Key laboratory for Advanced Materials and Institute of Fine Chemicals National Engineering Laboratory for Industrial Wastewater TreatmentSchool of Chemistry and Molecular EngineeringEast China University of Science and Technology130 Meilong RoadShanghai200237China Department of applied Natural Sciences Technische Hochschule LubeckMonkhofer Weg 23923562 LubeckGermany

The existence and risk of emerging organic contaminants(EOCs)have been under consideration and paid much effort to degrade these *** system is one of the most widely used technologies to solve this *** original Fenton system relies on the hydroxyl radicals produced by Fe(Ⅱ)/H_(2)O_(2) to oxidize the organic ***,the application of the Fenton system is limited by its low iron cycling efficiency and the high risks of hydrogen peroxide transportation and *** introduction of external energy(including light and electricity etc.)can effectively promote the Fe(Ⅲ)/Fe(Ⅱ)cycle and the reduction of oxygen to produce hydrogen peroxide in *** review introduces three in-situ Fenton systems,which are electro-Fenton,Photo-Fenton,and chemical *** mechanism,influencing factors,and catalysts of these three in-situ Fenton systems in degrading EOCs are discussed *** review strengthens the understanding of Fenton and in-situ Fenton systems in degradation,offering further insight into the real application of the in-situ Fenton system in the removal of EOCs.

关键词： In-situ H_(2)O_(2)production Fenton Emerging organic contaminants Photocatalysis Electrocatalysis

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Modelling the unexpected dynamics of COVID-19 in Manaus,Brazil

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Infectious Disease Modelling 2024年第2期9卷 557-568页

作者： Daihai He Yael Artzy-Randrup Salihu S.Musa Tiago Gräf Felipe Naveca Lewi Stone Department of applied Mathematics Hong Kong Polytechnic UniversityHong Kong SARChina Department of Theoretical and Computational Ecology IBEDUniversity of AmsterdamAmsterdamNetherlands Department of genomics and Computational Biology University of Massachusetts Chan Medical SchoolWorcesterMA01605USA Department of Mathematics Aliko Dangote University of Science and TechnologyKanoNigeria Instituto Gonçalo Moniz FiocruzSalvadorBahiaBrazil Instituto Leônidas e Maria Deane FiocruzManausBrazil Mathematical Sciences School of ScienceRMIT UniversityMelbourneAustralia Biomathematics Unit School of ZoologyFaculty of Life SciencesTel Aviv UniversityTel AvivIsrael

In late March 2020,SARS-CoV-2 arrived in Manaus,Brazil,and rapidly developed into a large-scale epidemic that collapsed the local health system and resulted in extreme death *** key studies reported that∼76%of residents of Manaus were infected(attack rate AR≃76%)by October 2020,suggesting protective herd immunity had been *** this,an unexpected second wave of COVID-19 struck again in November and proved to be larger than the first,creating a catastrophe for the unprepared *** has been suggested that this could be possible if the second wave was driven by ***,it is widely reported that reinfections were at a low rate(before the emergence of Omicron),and reinfections tend to be ***,we use novel methods to model the epidemic from mortality data without considering reinfection-caused deaths and evaluate the impact of interventions to explain why the second wave *** method fits a“flexible”reproductive numberR_(0)(t)that changes over the epidemic,and it is demonstrated that the method can successfully reconstruct R_(0)(t)from simulated *** Manaus,the method finds AR≃34%by October 2020 for the first wave,which is far less than required for herd immunity yet in-line with seroprevalence *** work is complemented by a two-strain *** genomic data,the model estimates transmissibility of the new P.1 virus lineage as 1.9 times higher than that of the ***,an age class model variant that considers the high mortality rates of older adults show very similar *** models thus provide a reasonable explanation for the two-wave dynamics in Manaus without the need to rely on large reinfection rates,which until now have only been found in negligible to moderate numbers in recent surveillance efforts.

关键词： Modelling COVID-19 Reproduction number Herd immunity Reinfection

shinyTempSignal:an R shiny application for exploring temporal and other phylogenetic signals

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Journal of Genetics and genomics 2024年第7期51卷 762-768页

作者： Li Zhan Xiao Luo Wenqin Xie Xuan-An Zhu Zijing Xie Jianfeng Lin Lin Li Wenli Tang Rui Wang Lin Deng Yufan Liao Bingdong Liu Yantong Cai Qianwen Wang Shuangbin Xu Guangchuang Yu Department of Bioinformatics School of Basic Medical SciencesSouthern Medical UniversityGuangzhouGuangdong 510515China Faculty of Computers Guangdong University of TechnologyGuangzhouGuangdong 510006China Ubigene Biosciences Co. Ltd.GuangzhouGuangdong 510530China State Key laboratory of applied Microbiology Southern China Guangdong Provincial Key Laboratory of Microbial Culture Collection and ApplicationGuangdong Open Laboratory of Applied MicrobiologyGuangdong Institute of MicrobiologyGuangdong Academy of SciencesGuangzhouGuangdong 510070China

The molecular clock model is fundamental for inferring species divergence times from molecular ***,its direct application may introduce significant biases due to sequencing errors,recombination events,and inaccurately labeled sampling *** accuracy necessitates rigorous quality control measures to identify and remove potentially erroneous ***,while not all branches of a phylogenetic tree may exhibit a clear temporal signal,specific branches may still adhere to the assumptions,with varying evolutionary *** a relaxed molecular clock model better aligns with the complexities of *** root-to-tip regression method has been widely used to analyze the temporal signal in phylogenetic studies and can be generalized for detecting other phylogenetic *** its utility,there remains a lack of corresponding software implementations for broader *** address this gap,we present shinyTempSignal,an interactive web application implemented with the shiny framework,available as an R package and publicly accessible at https://***/Yulab-SMU/*** tool facilitates the analysis of temporal and other phylogenetic signals under both strict and relaxed *** extending the root-to-tip regression method to diverse signals,shinyTempSignal helps in the detection of evolving features or traits,thereby laying the foundation for deeper insights and subsequent analyses.

关键词： Molecular clock Root-to-tip regression Temporal signal Phylogenetic signal

Host-induced gene silencing of multiple pathogenic factors of Sclerotinia sclerotiorum confers resistance to Sclerotinia rot in Brassica napus

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The Crop Journal 2022年第3期10卷 661-671页

作者： Jian Wu Shengliang Yin Li Lin Dongxiao Liu Sichao Ren Wenjing Zhang Wencheng Meng Peipei Chen Qinfu Sun Yujie Fang Cunxu Wei Youping Wang Key laboratory of Plant functional genomics of the Ministry of Education Yangzhou UniversityYangzhouChina Jiangsu Key laboratory of Crop genomics and Molecular Breeding Yangzhou UniversityYangzhouChina

Sclerotinia sclerotiorum is generally considered one of the most economically damaging pathogens in oilseed rape(Brassica napus).Breeding for Sclerotinia resistance is challenging,as no immune germplasm available in *** is desirable to develop new breeding *** the present study,hostinduced gene silencing(HIGS),developed based on RNA interference(RNAi),was applied to protect *** from *** *** pathogenicity genes,the endo-polygalacturonase gene(Ss PG1),cellobiohydrolase gene(Ss CBH),and oxaloacetate acetylhydrolase gene(Ss OAH1),were chosen as HIGS ***-incubation of synthesized double-stranded RNAs(ds RNAs)with *** in liquid medium significantly reduced the transcript levels of the target *** to plant surfaces of ds RNA targeting the three genes conferred effective protection against *** transgenic *** plants expressing small interfering RNAs with sequence identity to Ss PG1,Ss CBH,and Ss OAH1 were *** transgenic *** prevented the expression of *** target genes,slowed pathogenicity-factor accumulation,impeded fungal growth,and suppressed appressorium formation,thereby conferring resistance to *** silencing of Ss PG1,Ss CBH,and Ss OAH1 by stable expression of a chimeric hairpin RNAi construct in *** led to enhanced protection phenotypes(with disease lesion size reduced by 36.8%–43.7%).We conclude that HIGS of pathogenic-factor genes of *** is a promising strategy for controlling Sclerotinia rot in oilseed rape.

关键词： Sclerotinia sclerotiorum Brassica napus SIGS HIGS RNAi

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Genome editing of 30 UTR-embedded inhibitory region enables generation of gene knock-up alleles in plants

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Plant Communications 2024年第3期5卷 1-4页

作者： Hongwen Wang Dahan Zhang Mingjiang Chen Xiangbing Meng Shiwei Bai Peiyong Xin Jijun Yan Jinfang Chu Jiayang Li Hong Yu State Key laboratory of Plant genomics and National Center for Plant Gene Research Institute of Genetics and Developmental BiologyInnovation Academy for Seed DesignChinese Academy of SciencesBeijing 100101China University of Chinese Academy of Sciences Beijing 100049China Yazhouwan National laboratory Sanya 572024China

Dear Editor,Genome editing has revolutionized speed breeding by enabling researchers to alter the genome directly as desired(Gao,2021).The most widely used CRISPR–Cas9 technology has mainly been applied to engineer null mutations in coding sequences,with the goal of creating loss-of-function ***,upstream regulatory elements of the promoter region and 50 upstream open reading frame(uORF)have been engineered to generate gain-of-function alleles,producing versatile cis-regulatory effects,usually through changes in gene expression levels(Rodrıguez-Leal et al.,2017;Zhang et al.,2018;Song et al.,2022).

关键词： upstream breeding versatile

A pan-TE map highlights transposable elements underlying domestication and agronomic traits in Asian rice

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National Science Review 2024年第6期11卷 105-118页

作者： Xiaoxia Li Xiaofan Dai Huiying He Yang Lv Longbo Yang Wenchuang He Congcong Liu Hua Wei Xiangpei Liu Qiaoling Yuan Xianmeng Wang Tianyi Wang Bintao Zhang Hong Zhang Wu Chen Yue Leng Xiaoman Yu Hongge Qian Bin Zhang Mingliang Guo Zhipeng Zhang Chuanlin Shi Qianqian Zhang Yan Cui Qiang Xu Xinglan Cao Dandan Chen Yongfeng Zhou Qian Qian Lianguang Shang Shenzhen Branch Guangdong Laboratory of Lingnan Modern AgricultureGenome Analysis Laboratory of the Ministry of Agriculture and Rural AffairsAgricultural Genomics Institute at ShenzhenChinese Academy of Agricultural Sciences Rice Research Institute Shenyang Agricultural University Yazhouwan National laboratory State Key laboratory of Rice Biology China National Rice Research Institute National Key laboratory of Tropical Crop Breeding Tropical Crops Genetic Resources InstituteChinese Academy of Tropical Agricultural Sciences

Transposable elements(TEs) are ubiquitous genomic components and hard to study due to being highly repetitive. Here we assembled 232 chromosome-level genomes based on long-read sequencing *** the 232 genomes with 15 existing assemblies, we developed a pan-TE map comprising both cultivated and wild Asian rice. We detected 177 084 high-quality TE variations and inferred their derived state using outgroups. We found TEs were one source of phenotypic variation during rice domestication and differentiation. We identified 1246 genes whose expression variation was associated with TEs but not single-nucleotide polymorphisms(SNPs), such as Os Rboh B, and validated Os Rboh B's relative expression activity using a dual-Luciferase(LUC) reporter assays system. Our pan-TE map allowed us to detect multiple novel loci associated with agronomic traits. Collectively, our findings highlight the contributions of TEs to domestication, differentiation and agronomic traits in rice, and there is massive potential for gene cloning and molecular breeding by the high-quality Asian pan-TE map we generated.

关键词： transposable element super pan-genome pan-TE rice

Application of machine learning in perovskite materials and devices:A review

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Journal of Energy Chemistry 2024年第7期94卷 254-272页

作者： Ming Chen Zhenhua Yin Zhicheng Shan Xiaokai Zheng Lei Liu Zhonghua Dai Jun Zhang Shengzhong(Frank)Liu Zhuo Xu School of Electric Power Civil Engineering and ArchitectureCollege of Physics and Electronics EngineeringState Key Laboratory of Quantum Optics and Quantum Optics DevicesShanxiUniversityTaiyuan030006ShanxiChina Key laboratory of applied Surface and Colloid Chemistry National Ministry of EducationShanxi Engineering Lab for Advanced Energy TechnologySchool of Materials Science and EngineeringShaanxi Normal UniversityXi'an 710119ShaanxiChina State Key laboratory of Catalysis Dalian National Laboratory for Clean EnergyDalian Institute of Chemical PhysicsChinese Academy of SciencesDalian 116023LiaoningChina

Metal-halide hybrid perovskite materials are excellent candidates for solar cells and photoelectric *** recent years,machine learning(ML)techniques have developed rapidly in many fields and provided ideas for material discovery and *** can be applied to discover new materials quickly and effectively,with significant savings in resources and time compared with traditional experiments and density functional theory(DFT)*** this review,we present the application of ML in per-ovskites and briefly review the recent works in the field of ML-assisted perovskite ***,the advantages of perovskites in solar cells and the merits of ML applied to perovskites are ***,the workflow of ML in perovskite design and some basic ML algorithms are ***,the applications of ML in predicting various properties of perovskite materials and devices are ***,we propose some prospects for the future development of this *** rapid devel-opment of ML technology will largely promote the process of materials science,and ML will become an increasingly popular method for predicting the target properties of materials and devices.

关键词： Machine learning Perovskite Materials design Bandgap engineering Stability Crystal structure

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Structure–performance relationship of Au nanoclusters in electrocatalysis:Metal core and ligand structure

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Carbon Energy 2024年第8期6卷 63-89页

作者： Bowen Li Lianmei Kang Yongfeng Lun Jinli Yu Shuqin Song Yi Wang The Key lab of Low‐Carbon Chemistry&Energy Conservation of Guangdong Province PCFM LabSchool of Chemical Engineering and TechnologySchool of Materials Science and EngineeringSun Yat‐sen UniversityGuangzhouChina Department of Chemistry City University of Hong KongHong KongChina

Remarkable progress has characterized the field of electrocatalysis in recent decades,driven in part by an enhanced comprehension of catalyst structures and mechanisms at the *** precise metal nanoclusters,serving as exemplary models,significantly expand the range of accessible structures through diverse cores and ligands,creating an exceptional platform for the investigation of catalytic ***,ligand‐protected Au nanoclusters(NCs)with precisely defined core numbers offer a distinct advantage in elucidating the correlation between their specific structures and the reaction mechanisms in *** strategic modulation of the fine microstructures of Au NCs presents crucial opportunities for tailoring their electrocatalytic performance across various *** review delves into the profound structural effects of Au NC cores and ligands in electrocatalysis,elucidating their underlying mechanisms.A detailed exploration of the fundamentals of Au NCs,considering core and ligand structures,***,the interaction between the core and ligand structures of Au NCs and their impact on electrocatalytic performance in diverse reactions are *** the discourse,challenges and personal prospects are presented to guide the rational design of efficient electrocatalysts and advance electrocatalytic reactions.

关键词： Au nanoclusters core electrocatalytic performance ligand structures

Involvement of hepatitis B X-interacting protein (HBXIP) in proliferation regulation of cells

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Acta Pharmacologica Sinica 2007年第3期28卷 431-438页

作者： Feng-ze WANG~2 Li SHA~3 Wei-ying ZHANG~3 Lian-ying WU~2 Ling QIAO~2 Nan LI~3 Xiao-dong ZHANG~(3,4) Li-hong YE~(2,4) Departments of ~2Biochemistry and ~3Cancer Research,Tianjin Key laboratory of Microbial functional genomics,Institute for Molecular Biology,College of Life Sciences,Nankai University,Tianjin 300071,China Department of Biochemistry Tianjin Key Laboratory of Microbial Functional Genomics Institute for Molecular Biology College of Life Sciences Nankai University Tianjin China Department of Cancer Research Tianjin Key Laboratory of Microbial Functional Genomics Institute for Molecular Biology College of Life Sciences Nankai University Tianjin China

Aim:To investigat the effect of Hepatitis B X-interacting protein(HBXIP)on ***:A rabbit antibody against HBXIP was *** interference(RNAi)fragment of the HBXIP gene was constructed in thepSilencer-3.0-H1 vector termed *** of the pcDNA3-hbxipencoding HBXIP gene and pSilencer-hbxip were transfected into human breastcarcinoma MCF-7 cells,hepatoma H7402 cells,and the normal human hepatic cellline L-O2,respectively.3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bro-mide(MTT)assay and 5-bromo-2-deoxyuridine incorporation assay were appliedto detect cell ***-7 cells and L-O2 cells in the cell cycle wereexamined by flow *** proteins involved in cell proliferation and cellcycle were investigated by Western ***:Overexpression of HBXIPresulted in the promotion of proliferation of MCF-7,H7402,and L-O2 *** showed that the overexpression of HBXIP promoted the cell prolifera-tion of MCF-7 and L-O2 cells,and led to an increased cell proliferative index inMCF-7 cells(from 46.25% to 58.28%)and L-O2 cells(from 29.62% to 35.54%).Western blot showed that expression levels of c-Myc,Bcl-2,and proliferating cellnuclear antigen were upregulated in MCF-7,H7402,or L-O2 cells,whereas that ofp27 was ***,the RNAi of HBXIP brought opposite ***:One of the functions of HBXIP is its involvement in cell proliferation.

关键词： HBXIP cell proliferation cell cycle