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A novel method for clustering cellular data to improve classification

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Neural Regeneration Research 2025年第9期20卷 2697-2705页

作者： Diek W.Wheeler Giorgio A.Ascoli Center for Neural Informatics Structures&PlasticityKrasnow Institute for Advanced Study bioengineering {1. Volgenau School of Engineering George Mason University FairfaxVAUSA

Many fields,such as neuroscience,are experiencing the vast prolife ration of cellular data,underscoring the need fo r organizing and interpreting large datasets.A popular approach partitions data into manageable subsets via hierarchical clustering,but objective methods to determine the appropriate classification granularity are *** recently introduced a technique to systematically identify when to stop subdividing clusters based on the fundamental principle that cells must differ more between than within *** we present the corresponding protocol to classify cellular datasets by combining datadriven unsupervised hierarchical clustering with statistical *** general-purpose functions are applicable to any cellular dataset that can be organized as two-dimensional matrices of numerical values,including molecula r,physiological,and anatomical *** demonstrate the protocol using cellular data from the Janelia MouseLight project to chara cterize morphological aspects of neurons.

关键词： cellular data clustering dendrogram data classification Levene's one-tailed statistical test unsupervised hierarchical clustering

miR-2940-1.is involved in the circadian regulation of oviposition in Aedes albopictus

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Insect Science 2025年第1期32卷 69-79页

作者： Xiaolin Xiao Ling Kong Zhensheng Xie Hongkai Liu Lijun Cai Siyu Zhao Jiayong Zhou Shuang Liu Jing Wu Yiming Wu Peilin Wu Anthony A.James Xiao-Guang Chen department of Pathogen Biology Institute of Tropical MedicineSchool of Public HealthSouthern Medical UniversityGuangzhouChina department of Microbiology&{1. Genetics University of CaliforniaIrvineCAUSA department of {1. Biology&Biochemistry University of CaliforniaIrvineCAUSA

The vast majority of all global species have circadian rhythm cycles that allow them to adapt to natural *** regular rhythms are regulated by core clock genes and recent studies have also implicated roles for microRNAs in this *** is an important circadian behavior in the reproductive cycle of insect vectors of diseases,and little is known about the rhythm or its regulation in *** albopictus is a diurnal mosquito that transmits arboviruses and is the major cause of outbreaks of dengue fever in *** analyzed the oviposition rhythm patterns of *** under different light/dark conditions and show that the mosquitoes have an oviposition peak between zeitgeber time 9(ZT 9)and ZT ***,the antagomir-mediated knockdown of expression of the microRNA miR-2940-1.affected the oviposition rhythm of *** data support the conclusion that miR-2940-1.is involved in the regulation of oviposition rhythm in *** and provide a foundation for using oviposition rhythms as a new target for vector mosquito control.

关键词： Aedes albopictus miR-2940-l oviposition rhythm regulation

Effects of mutated replicase and movement protein genes on attenuation of tobacco mosaic virus

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Science China(Life Sciences) 2001年第6期44卷 628-636页

作者：杨恭邱并生魏军亚刘广超 1. department of molecular virology and bioengineering Institute of Microbiology Chinese Academy of Sciences 100080 Beijing China

Our previous reports showed that one opal mutation (UGA) and one ochre mutation (UAA) respectively located in the replicase and movement protein (MP) genes of the attenuated tomato mosaic virus K(ToMV-K) contribute to the viral attenuation. To explore a wider application of this attenuation pattern to other plant viruses, we have constructed three mutants which respectively contain one opal mutation of the replicase gene and/or one ochre mutation of the MP using PCR-mediated site-directed mutagenesis from a virulent tobacco mosaic virus isolated from China (TMV-Cv). Plant infection performed by in vitro transcripts revealed that the MP truncated mutant TMV-Cvmp and the replicase-MP truncated mutant TMV-Cvrase-mp were infectious on both local lesion (Nicotiana tabacum cv. Xanthi NC) and systemic (N. tabacum cv. K326) host plants, while the replicase truncated mutant TMV-Cvrase was non-infectious. The K326 plant infected by TMV-Cvrease-mp displayed on|y a little mild mosaic. By electronic microscopy (EM), plant re-inoculation, RNA Dot-blot, RT-PCR and sequencing we demonstrated that the progeny viruses of TMV-Cvmp and TMV-Cvrease-mp shared similar morphological character with TMV-Cv, owned the abilities to infect, replicate and propagate in the assayed plants, and maintained the mutated sites during infection. These data showed that both the opal and the ochre mutations are able to cooperatively induce the attenuated phenotypes of TMV-Cvrase-mp on plants, indicating that the mutation pattern of ToMV-K could be used to attenuate other virulent plant viruses.

关键词： tobacco mosaic virus (TMV) replicase movement protein (MP) attenuation mutation.

Polyethylene glycol fusion repair of severed sciatic nerves accelerates recovery of nociceptive sensory perceptions in male and female rats of different strains

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Neural Regeneration Research 2025年第9期20卷 2667-2681页

作者： Liwen Zhou Karthik Venkudusamy Emily A.Hibbard Yessenia Montoya Alexa Olivarez Cathy Z.Yang Adelaide Leung Varun Gokhale Guhan Periyasamy Zeal Pathak Dale R.Sengelaub George D.Bittner department of Neuroscience University of TexasAustinTXUSA Program in Neuroscience Indiana UniversityBloomingtonINUSA department of {1. Biosciences University of TexasAustinTXUSA

Successful polyethylene glycol fusion(PEG-fusion)of severed axons following peripheral nerve injuries for PEG-fused axons has been reported to:(1.rapidly restore electrophysiological continuity;(2)prevent distal Wallerian Degeneration and maintain their myelin sheaths;(3)promote primarily motor,voluntary behavioral recoveries as assessed by the Sciatic Functional Index;and,(4)rapidly produce correct and incorrect connections in many possible combinations that produce rapid and extensive recovery of functional peripheral nervous system/central nervous system connections and reflex(e.g.,toe twitch)or voluntary *** preceding companion paper describes sensory terminal field reo rganization following PEG-fusion repair of sciatic nerve transections or ablations;howeve r,sensory behavioral recovery has not been explicitly explored following PEG-fusion *** the current study,we confirmed the success of PEG-fusion surgeries according to criteria(1.3)above and more extensively investigated whether PEG-fusion enhanced mechanical nociceptive recovery following sciatic transection in male and female outbred Sprague-Dawley and inbred Lewis *** nociceptive responses were assessed by measuring withdrawal thresholds using von Frey filaments on the dorsal and midplantar regions of the *** von Frey filament tests were a more reliable method than plantar von Frey filament tests to assess mechanical nociceptive sensitivity following sciatic nerve *** withdrawal thresholds of the sciatic-mediated lateral dorsal region differed significantly across strain but not *** thresholds did not change significantly from baseline in chronic Unoperated and Sham-operated *** sciatic transection,all rats exhibited severe hyposensitivity to stimuli at the lateral dorsal region of the hindpaw ipsilateral to the ***,PEG-fused rats exhibited significantly earlier return to baseline withdrawal thresholds than Negative

关键词： autophagia axotomy collateral sprouting neuropathic pain peripheral nerve repair polyethylene glycol fusion(PEG-fusion) saphenous nerve sensory neurons sex and strain Wallerian degeneration

Recycling technologies of spent lithium-ion batteries and future directions:A review

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Transactions of Nonferrous Metals Society of China 2025年第1期35卷 271-295页

作者： Xue-song GAO Meng WU Guang-jin ZHAO Kun-hong GU Jia-jia WU Hong-bo ZENG Wen-qing QIN Jun-wei HAN School of Minerals Processing&bioengineering Central South UniversityChangsha 410083China department of Chemical and Materials Engineering University of AlbertaEdmonton T6G 1H9Canada Electric Power Research Institute Henan Electric Power CompanySTATE GRID Corporation of ChinaZhengzhou 450052China

Lithium-ion batteries(LIBs)are the most popular energy storage devices due to their high energy density,high operating voltage,and long cycle ***,green and effective recycling methods are needed because LIBs contain heavy metals such as Co,Ni,and Mn and organic compounds inside,which seriously threaten human health and the *** this work,we review the current status of spent LIB recycling,discuss the traditional pyrometallurgical and hydrometallurgical recovery processes,and summarize the existing short-process recovery technologies such as salt-assisted roasting,flotation processes,and direct ***,we analyze the problems and potential research prospects of the current recycling process,and point out that the multidisciplinary integration of recycling will become the mainstream technology for the development of spent LIBs.

关键词： spent lithium battery short-process recycling secondary resources pretreatment metal recovery

Syndecans in Alzheimer's disease:pathogenetic mechanisms and potential therapeutic targets

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Neural Regeneration Research 2025年第9期20卷 2594-2595页

作者： Carmela Rita Balistreri Roberto Monastero Cellular Molecular and Clinical Pathological LaboratoryDepartment of BiomedicineNeuroscience and Advanced Diagnostics(Bi.N.D.)University of PalermoPalermoItaly Memory and Parkinson’s disease Center Policlinico“Paolo Giaccone”PalermoDepartment of BiomedicineNeuroscience and Advanced Diagnostics(Bi.N.D.)University of PalermoVia La Loggia 1PalermoItaly

With increasing age,humans become more susceptible to the onset of neurodegenerative diseases(NDs),and among these,Alzheimer's disease(AD)is the most frequent(Nicoletti et al.,2023).NDs are primarily characterized by neuronal loss and atrophy,but also by lesions involving the cerebral and/or cardiovascular system(Balistreri,2021..Lesions such as macroinfa rcts,microinfarcts,hemorrhages,white matter lesions,atherosclerosis,and arteriolosclerosis have also been significantly described in the preclinical stages of cognitive impairment characterizing NDs(Mariani et al.,2007).

关键词： Alzheimer cardiovascular

Polyethylene glycol has immunoprotective effects on sciatic allografts, but behavioral recovery and graft tolerance require neurorrhaphy and axonal fusion

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Neural Regeneration Research 2025年第4期20卷 1192-1206页

作者： Tyler A.Smith Liwen Zhou Cameron L.Ghergherehchi Michelle Mikesh Cathy Z.Yang Haley O.Tucker JuliAnne Allgood Jared S.Bushman George D.Bittner department of {1. Biosciences University of Texas at AustinAustinTXUSA department of Neuroscience University of Texas at AustinAustinTXUSA Division of Pharmaceutical Sciences University of WyomingLaramieWYUSA

Behavioral recovery using(viable)peripheral nerve allografts to repair ablation-type(segmental-loss)peripheral nerve injuries is delayed or poor due to slow and inaccurate axonal ***,such peripheral nerve allografts undergo immunological rejection by the host immune *** contrast,peripheral nerve injuries repaired by polyethylene glycol fusion of peripheral nerve allografts exhibit excellent behavioral recovery within weeks,reduced immune responses,and many axons do not undergo Wallerian *** relative contribution of neurorrhaphy and polyethylene glycol-fusion of axons versus the effects of polyethylene glycol per se was unknown prior to this *** hypothesized that polyethylene glycol might have some immune-protective effects,but polyethylene glycol-fusion was necessary to prevent Wallerian degeneration and functional/behavioral *** examined how polyethylene glycol solutions per se affect functional and behavioral recovery and peripheral nerve allograft morphological and immunological responses in the absence of polyethylene glycol-induced axonal ***-type sciatic nerve injuries in outbred Sprague–Dawley rats were repaired according to a modified protocol using the same solutions as polyethylene glycol-fused peripheral nerve allografts,but peripheral nerve allografts were loose-sutured(loose-sutured polyethylene glycol)with an intentional gap of 1.2 mm to prevent fusion by polyethylene glycol of peripheral nerve allograft axons with host *** to negative control peripheral nerve allografts not treated by polyethylene glycol and in contrast to polyethylene glycol-fused peripheral nerve allografts,animals with loose-sutured polyethylene glycol peripheral nerve allografts exhibited Wallerian degeneration for all axons and myelin degeneration by 7 days postoperatively and did not recover sciatic-mediated behavioral functions by 42 days *** morphological signs of rejection,such as col

关键词： allograft rejection axotomy macrophage myelin nerve repair polyethylene glycol(PEG) sciatic nerve T cell transplantation Wallerian degeneration

Enhancing the high-temperature stability of OFETs by inducing D-A stacking in P(NDI2OD-T2) films

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Science China Materials 2025年第1期68卷 117-124页

作者： Xuetao Xiao Wenhao Li Qing Zhou Zeng Wu Xiaochan Zuo Rong Ma Yifei Xu Sichun Wang Yan Zhao Laboratory of molecular Materials and Devices Department of Materials ScienceFudan UniversityShanghai 200433China State Key Laboratory of molecular Engineering of Polymers and {1. of Macromolecular Science Fudan UniversityShanghai 200433China

High-temperature stability of organic field-effect transistors(OFETs)is critical to ensure its long-term reliable operation under various environmental *** molecular packing of donor-acceptor(D-A)conjugated polymers is closely related to the electrical performance stability in ***,we choose poly[[N,N′-bis(2-octyldodecyl)-naphthalene-1.4,5,8-bis(dicarboximide)-2,6-diyl]-alt-5,5′-(2,2′-bithiophene)]as a modal system to reveal the relationship between the molecular stacking and electrical stability in high-temperature *** results demonstrate that the films with D-A moieties in alternate stacking have better electrical thermal stability compared to normal donor-donor(D-D)*** D-A stacking configuration alternates donor and acceptor units along the out-of-plane direction,while the D-D stacking involves D-D and A-A stacking *** structural transition from D-D to D-A is captured at a treated temperature range of 225±250°*** to the tighter packing arrangement along theπ-πand lamellar directions,the electron mobility of the D-A stacked films reaches up to 0.23 cm^(2)/V·s,a 50%increase as compared to the D-D stacking ***,the D-A stacked films indicate superior electrical performance stability with mobility retaining 1.0%at 250°C during high-temperature cycling *** result highlights that the manipulation of conjugated polymer closely stacked structures can significantly enhance the thermal stability and durability of semiconductor devices.

关键词： high-temperature stability D-A stacking P(NDI2OD-T2) electrical properties OFETs

Mild liver injury following withdrawal of long-term prednisonetherapy: A case report

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World Journal of Gastroenterology 2025年第4期31卷 144-150页

作者： Jing-Wen Zhu Jun Yan Zhi-Han Zhang Tian-Qi Wang department of Biochemistry and {1. Biology School of Basic Medical SciencesZhengzhou UniversityZhengzhou 450001Henan ProvinceChina

BACKGROUND Liver injury manifesting as hepatic enzyme abnormalities,has been occasionally identified to be a feature of primary or secondary Addison's disease,an uncommon endocrine disease characterized by adrenal *** have been no more than 30 reported cases of liver injury explicitly attributed to Addison's *** injury resulting from adrenal insufficiency due to glucocorticoid withdrawal is exceptionally *** SUMMARY A 42-year-old man presented with fatigue and mildly elevated *** investigations and imaging studies excluded common etiologies of liver *** on the fact that the patient discontinued long-term therapy with prednisone approximately 2 weeks before he was found to have elevated transaminase levels and the observation that his cortisol was lower than the normal value,he was diagnosed as having hypertransaminasemia secondary to adrenal insufficiency caused by glucocorticoid *** patient was infused intravenously with compound diisopropylamine dichloroacctate and compound glycyrrhizin,and his transaminase levels returned to normal after 1.*** 2 years later,the patient received hydroprednisone treatment for 2 days in an endoscopic sinus *** days after he discontinued the hydroprednisone treatment,he developed symptoms reminiscent of glucocorticoid withdrawal *** symptoms resolved spontaneously after 1.***,the patient did not develop hepatic dysfunction this *** The present case,showing some unusual clinical features,highlights the importance of education of clinicians and patients to avoid improper discontinuation of glucocorticoid therapy and complete history taking for prompt recognition.

关键词： Liver injury Transaminase Prednisone Addison's disease Adrenal insufficiency Case report