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Parallel selection of distinct Tof5 alleles drove the adaptation of cultivated and wild soybean to high latitudes

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Molecular Plant 2022年第2期15卷 308-321页

作者： Lidong Dong Qun Cheng Chao Fang Lingping Kong Hui Yang Zhihong Hou Yongli Li Haiyang Nan Yuhang Zhang Qingshan Chen Chunbao Zhang Kun Kou Tong Su Lingshuang Wang Shichen Li Haiyang Li Xiaoya Lin Yang Tang Xiaohui Zhao Sijia Lu Baohui Liu Fanjiang Kong Innovative Center of Molecular Genetics and Evolution School of Life SciencesGuangzhou UniversityGuangzhou 510405China College of Agriculture Heilongjiang Bayi Agricultural UniversityDaqing 163000China Department of Agriculture Northeast Agricultural UniversityHarbin 150000China Soybean Research Institute National Engineering Research Center for SoybeanJilin Academy of Agricultural SciencesChangchun 130033China National Center for Soybean Improvement National Key Laboratory of Crop Genetics and Germplasm EnhancementNanjing Agricultural UniversityNanjing 210095China The Innovative Academy of Seed Design Key Laboratory of Soybean Molecular Design BreedingNortheast Institute of Geography and AgroecologyChinese Academy of SciencesHarbin 150081China

Photoperiod responsiveness is a key factor limiting the geographic distribution of cultivated soybean and its wild ancestor.In particular,the genetic basis of the adaptation in wild soybean remains poorly understood.In this study,by combining whole-genome resequencing and genome-wide association studies we identified a novel locus,Time of Flowering 5(Tof5),which promotes flowering and enhances adaptation to high latitudes in both wild and cultivated soybean.By genomic,genetic and transgenic analyses we showed that Tof5 en-codes a homolog of Arabidopsis thaliana FRUITFULL(FUL).Importantly,further analyses suggested that different alleles of Tof5 have undergone parallel selection.The Tof5H1 allele was strongly selected by humans after the early domestication of cultivated soybean,while Tof5H2 allele was naturally selected in wild soybean,and in each case facilitating adaptation to high latitudes.Moreover,we found that the key flowering repressor E1 suppresses the transcription of Tof5 by binding to its promoter.In turn,Tof5 physically associates with the promoters of two important FLOWERING LOCUS T(FT),FT2a and FT5a,to upregulate their transcription and promote flowering under long photoperiods.Collectively,ourfindings provide insights into how wild soybean adapted to high latitudes through natural selection and indicate that cultivated soybean underwent changes in the same gene but evolved a distinct allele that was artificially selected after domestication.

关键词： soybean wild natural selection artificially selection latitude adaptation flowering time

Isolation and characterization of Akabane virus Ib substrain and its pathogenesis in sulking mice

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Virologica Sinica 2023年第6期38卷 966-970页

作者： Xiaohui Zan Shirong Wang Tianqi Zhang Ying Li Chunge Zhang Cun Fu Jialei Wang Youzhi Wu Yanhua Ma Zhifei Li Yan Wang Hao Wang Yuhai Bi Wei Wang State Key Laboratory of Reproductive Regulation&Breeding of Grassland Livestock College of Life SciencesInner Mongolia UniversityHohhot010070China CAS Key Laboratory of Pathogenic Microbiology and Immunology Institute of MicrobiologyCenter for Influenza Research and Early-warning(CASCIRE)CAS-TWAS Center of Excellence for Emerging Infectious Diseases(CEEID)Chinese Academy of SciencesBeijing100101China Inner Mongolia Mengwei Biotech Co.Ltd Hohhot012000China University of Chinese Academy of Sciences Beijing100049China College of Basic Medicine Inner Mongolia Medical UniversityHohhot010080China

Dear Editor,Akabane disease is an arthropod-borne viral disease caused by the Akabane virus(AKAV)that can affect cattle,sheep,and goats.Inapparent infections in adults can lead months later to abortions,stillbirths,congenital defects,and death in newborns(Kurogi et al.,1976).wild ruminants can also be affected,but abnormalities of the offspring in these species have not been reported.One report suggests that this virus can also cause clinical signs in pigs(Yanase et al.,2018).

关键词： wild strain characterization

Crop wild relatives of Kazakhstani Tien Shan:Flora,vegetation,resources

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Plant Diversity 2020年第1期42卷 19-32页

作者： Gulnara T.Sitpayeva Gulmira M.Kudabayeva Liliya A.Dimeyeva Nadezhda G.Gemejiyeva Polina V.Vesselova Institute of Botany and Phytointroduction Ministry of Education and Science050040AlmatyKazakhstan

This paper presents the results of the field study on species composition,geographical distribution,phytocoenotic diversity and resources of crop wild relatives(CWR) in Kazakhstan’s ranges of the Tien Shan Mountains.Taxa of not only cultivated genera of crops are taken into account,but also a wider range of species of high socio-economic importance,including medicinal,fodder,essential oil and other species.List of CWR includes 289 species belonging to 39 families and 145 genera.Among them,9 species listed in the Red Data book of Kazakhstan:Pistacia vera,Rheum wittrockii,Armeniaca vulgaris,Malus sieversii,Allium pskemense,Allochrusa gypsophilloides,Sorbus sibirica,Vitis vinifera and Artemisia cina.The highest plant diversity is recorded in intermountain plains and river valleys where meadow vegetation forms a high abundance of forage and resource plants.The diversity of wild fruit plants is concentrated in gallery forests.CWR of cereals are confined to dry steppe slopes in low piedmont belt.The populations of almond,pistachio,plum and cherry were recorded at dry slopes of low mountain belt.The estimation of the raw material base for 13 resource plants is given.Only Rumex tianschanicus,Berberis sphaerocarpa are recommended for industrial harvesting;for local pharmacy chain-Mentha longifolia,Origanum vulgare,O.vulgare subsp.gracile,Ziziphora clinopodioides,Hypericum scabrum,Hypericum perforatum,and five Rosa species.

关键词： Crop wild relatives Flora Vegetation Resources Mountains Kazakhstani Tien Shan

Study on genetic coadaptability of wild quail populations in China

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Science China(Life Sciences) 2006年第2期49卷 172-181页

作者： HASSAN Hussein Animal Science & Technology College Yangzhou University

Genetic coadaptability of wild Japanese quail, wild Common quail and Domestic quail populations in China was studied using 7 microsatellite DNA markers and Monte Carlo method to test genetic disequilibrium. The molecular effects of genetic coadaptability were analyzed through a new statistical model of neutral site. The results showed that genetic coadaptability dominated the genetic disequilibrium of the three quail populations, and totally 16.67%, 9.66% and 10.05% of non-allelic combinations were in the genetic disequilibrium in wild Japanese quail, wild Common quail and Do-mestic quail populations, respectively. Genetic coadaptability existed at almost all the tested sites. In the molecular point of view, genetic coadaptability plays an important role of keeping lots of poly-morphisms in natural populations. Therefore, it is another key factor to the genetic disequilibrium in the population except for linkage. The results enrich the conceptions and connotations of genetic disequilibrium, and help us know more about genetic coadaptability and its effects, and lay a founda-tion of evaluation and protection of wild quail genetic resources in China.

关键词： microsatellite, wild quail, genetic coadaptability, linkage, genetic disequilibrium.

Molecular survey of tick-borne pathogens in Ixodid ticks collected from hunted wild animals in Tuscany, Italy

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Asian Pacific Journal of Tropical Medicine 2015年第9期8卷 702-705页

作者： Valentina Virginia Ebani Fabrizio Bertelloni Barbara Turchi Dario Filogari Domenico Cerri Department of Veterinary Science University of Pisa

Objective: To determine the prevalence of zoonotic tick-borne bacteria in feeding ticks removed from hunted wild animals. Methods: PCR was executed on DNA extracted from 77 tick pools to detect Anaplasma phagocytophilum, Bartonella spp., Borrelia burgdorferi sensu lato, Coxiella burnetii and Rickettsia spp. Results: A total of 432 ticks were collected: 30(6.94%) Haemaphysalis punctata, 72(16.7%) Dermacentor marginatus and 330(76.38%) Ixodes ricinus. For each animal one or two pools of 3 ticks of the same species was constituted. Seventy-seven tick pools were examined by PCR: 58(75.32%) resulted infected and among them 14(18.18%) showed co-infections. In particular, 29(37.66%) pools were positive for Bartonella spp., 23(29.87%) for Anaplasma phagocytophilum, 16(20.78%) for Rickettsia spp., and 5(6.49%) for Borrelia burgdorferi s.l. All samples were negative for Coxiella burnetii. Conclusions: The results demonstrate the presence of several zoonotic tick-borne pathogens in the studied area, and underline the risk of exposure to infections for hunters not only during the outdoor activity, but also when they manipulate hunted animals infested by infected ticks.

关键词： Ixodid ticks Tick-borne bacteria wild animals PCR Hunters

Preliminary attempt to distinguish the domesticated pigs from wild boars by the methods of carbon and nitrogen stable isotope analysis

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Science China Earth Sciences 2009年第1期52卷 85-92页

作者： Michael P.RICHARDS Department of Human Evolution Max-Planck Institute for Evolutionary AnthropologyDeutscher Platz 6D-04103LeipzigGermany

Despite great achievements in the origins of domestic pigs made by the methods of zooarchaeology and molecular biology,how to scientifically distinguish the domesticated pigs from wild boars during the early stage of pig domestication is still poorly understood.Compared to wild boar's diets which come from the natural environment,the diets of domestic pigs are more easily influenced by human feeding activities.Therefore,in principle,exploration of the dietary differences among pigs and understanding the impact on pig diets fed by humans can have great potential to differentiate between wild boars and domesticated pigs.To reveal dietary differences among pigs and distinguish the domesticated pigs from wild boars based on comparison with the diets of humans and other animals,we analyzed the carbon and nitrogen stable isotopes of human bones from Xiaojingshan Site and animal bones from Yuezhuang Site,both of which belong to Houli Culture in Shandong Province and date to about 8500―7500 years ago.The mean δ 13C value((-17.8 ± 0.3)‰) and δ 15N value((9.0±0.6)‰) in human collagen indicate that although millet agriculture began it was not the main subsistence strategy as millets are typical of C4 plants and that humans made a living mainly by gathering,hunting or raising some domesticated animals.The δ 13C value(-16.1‰) and δ 15N value(6.9‰) in the bovine suggest that C3 plants were dominant in its diet with some C4 plants complemented.The fish has lower δ 13C value(-24.9‰) and higher δ 15N value(8.8‰) than the bovine,which is the characteristic of the isotopic values from Eurasian freshwater fish.Based on the differences in carbon and nitrogen isotope values,the pigs can be divided into three groups.A group,composed of two pigs,has low δ 13C values(-18.1‰,-20.0‰) and low δ 15N values(4.7‰,6.0‰).B group,only one pig,has the highest δ 13C value(-10.6‰) and mediate δ 15N value(6.4‰).As for the C group,also only one pig,low δ 13C value(-19.0‰) and the highest δ 15N value(9.1‰) are observed.Previous studies on the stable is

关键词： origins of domestic pigs early stage of domestication differentiation of domesticated pigs from wild boars carbon and nitrogen stable isotope analysis millet agriculture

A matrix description of a wild category

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Science China Mathematics 1998年第5期41卷 461-475页

作者：张英伯雷天刚 Department of Mathematics Beijing Normal University Beijing China Institute of Mathematics UNAM Ciudad University Mexico D. F. Mexico

A bocs A of representation wild type over an algebraically closed field k and its representation category R (A) are concretely described by using matrix method. It is proved that A has almost split sequences and strong homogeneous property in the case ch k =0. Thus there exists neither proper projective nor proper injective object in R (A). And for each indecomposable object M in R (A), there exists a proper almost split sequence, which is given explicitly.

关键词： representation wild type bocs representation category almost split sequence homogeneous.

Induced pluripotent stem cells throughout the animal kingdom:Availability and applications

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World Journal of Stem Cells 2019年第8期11卷 491-505页

作者： Lais Vicari de Figueiredo Pessoa Fabiana Fernandes Bressan Kristine Karla Freude Group of Stem Cell Models for Studies of Neurodegenerative Diseases Section for Pathobiological Sciences Department of Veterinary and Animal Sciences Faculty of Health and Medical Sciences University of Copenhagen Frederiksberg 1870 Denmark Department of Veterinary Medicine Faculty of Animal Science and Food Engineering University of Sao Paulo Pirassununga 13635-000 Sao Paulo Brazil

Up until the mid 2000s, the capacity to generate every cell of an organism was exclusive to embryonic stem cells. In 2006, researchers Takahashi and Yamanaka developed an alternative method of generating embryonic-like stem cells from adult cells, which they coined induced pluripotent stem cells (iPSCs). Such iPSCs possess most of the advantages of embryonic stem cells without the ethical stigma associated with derivation of the latter. The possibility of generating “custom-made” pluripotent cells, ideal for patient-specific disease models, alongside their possible applications in regenerative medicine and reproduction, has drawn a lot of attention to the field with numbers of iPSC studies published growing exponentially. IPSCs have now been generated for a wide variety of species, including but not limited to, mouse, human, primate, wild felines, bovines, equines, birds and rodents, some of which still lack well-established embryonic stem cell lines. The paucity of robust characterization of some of these iPSC lines as well as the residual expression of transgenes involved in the reprogramming process still hampers the use of such cells in species preservation or medical research, underscoring the requirement for further investigations. Here, we provide an extensive overview of iPSC generated from a broad range of animal species including their potential applications and limitations.

关键词： Pluripotency Embryonic Stem cell Reprogramming Animal wild Induced pluripotency

Grazing by wild giant pandas does not affect the regeneration of Arundinaria spanostachya

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Journal of Forestry Research 2019年第4期30卷 1513-1520页

作者： Longyan Zhang Xiaohong Gan Zhengyang Hou Zhisong Yang Zejun Zhang Key Laboratory of Southwest China wildlife Resources Conservation(Ministry of Education) Nanchong 637009Sichuan ProvinceChina Institute of Plant Adaptation and Utilization in Southwest Mountain China West Normal UniversityNanchong 637009China

Arundinaria spanostachya is the main bamboo species on which giant pandas forage.Information on its regeneration capacity to meet the foraging demands of pandas is important to ensure the long-term survival of pandas.In 2014,2 plot types(grazed versus control)were selected in the winter habitat used by one wild giant panda.Various morphological and regeneration characteristics of the bamboo were assessed in the respective plots during 2014 and 2015.The panda avoided feeding on bamboo with a basal diameter of<6 mm,preferentially feeding on intermediate-sized bamboo.The density of new shoots and the recruitment rate of shoots were significantly higher in the grazed plots compared to the control plots.The annual recruitment rate of shoots was markedly higher than the annual mortality rate in the same plot type.After grazing,the basal diameter and height of new bamboo were similar between the 2 plots.In the grazed plots,the basal diameter of new bamboo was similar to that of the stumps.Innutrition and foraging by insects were the main factors influencing the survival of new shoots.Our results showed that grazing by giant pandas helped the clonal regeneration of A.spanostachya populations,with the basal diameter of new bamboo shoots meeting the foraging demand of pandas.However,information on the carrying capacity of A.spanostachya is necessary to ensure sufficient forage matter is available for reintroduced giant pandas.Furthermore,fertilization and insect control measures should be implemented during the shooting period to optimize A.spanostachya resources.

关键词： Arundinaria spanostachya(Yi)Li Grazing Impact Population regeneration wild giant panda