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Soybean(Glycine max)rhizosphere organic phosphorus recycling relies on acid phosphatase activity and specific phosphorusmineralizing-related bacteria in phosphate deficient acidic soils

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Journal of Integrative Agriculture 2024年第5期23卷 1685-1702页

作者： Qianqian Chen Qian Zhao Baoxing Xie Xing Lu Qi Guo Guoxuan Liu Ming Zhou Jihui Tian Weiguo Lu Kang Chen Jiang Tian Cuiyue Liang Root Biology Center State Key Laboratory for Conservation and Utilization of Subtropical Agro-BioresourcesCollege of Natural Resources and EnvironmentSouth China Agricultural UniversityGuangzhou 510642China College of Natural Resources and Environment South China Agricultural UniversityGuangzhou 510642China Henan Academy of Crops Molecular Breeding Henan Academy of Agricultural SciencesZhengzhou 450002China

Bacteria play critical roles in regulating soil phosphorus(P) cycling. The effects of interactions between crops and soil P-availability on bacterial communities and the feedback regulation of soil P cycling by the bacterial community modifications are poorly understood. Here, six soybean(Glycine max) genotypes with differences in P efficiency were cultivated in acidic soils with long-term sufficient or deficient P-fertilizer treatments. The acid phosphatase(AcP) activities, organic-P concentrations and associated bacterial community compositions were determined in bulk and rhizosphere soils. The results showed that both soybean plant P content and the soil AcP activity were negatively correlated with soil organic-P concentration in P-deficient acidic soils. Soil P-availability affected the ɑ-diversity of bacteria in both bulk and rhizosphere soils. However, soybean had a stronger effect on the bacterial community composition, as reflected by the similar biomarker bacteria in the rhizosphere soils in both P-treatments. The relative abundance of biomarker bacteria Proteobacteria was strongly correlated with soil organic-P concentration and AcP activity in low-P treatments. Further high-throughput sequencing of the phoC gene revealed an obvious shift in Proteobacteria groups between bulk soils and rhizosphere soils, which was emphasized by the higher relative abundances of Cupriavidus and Klebsiella, and lower relative abundance of Xanthomonas in rhizosphere soils. Among them, Cupriavidus was the dominant phoC bacterial genus, and it was negatively correlated with the soil organic-P concentration. These findings suggest that soybean growth relies on organic-P mineralization in P-deficient acidic soils, which might be partially achieved by recruiting specific phoCharboring bacteria, such as Cupriavidus.

关键词： organic phosphorus acid phosphatase soybean bacterial community phoC-harboring bacteria rhizosphere

Morphological Characterization of Arbuscular Mycorrhizal Fungi Associated with the rhizosphere According to the Age of Xanthosoma sagittifolium L. Schott Plants in the Field

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American Journal of Plant Sciences 2024年第3期15卷 161-179页

作者： Audrey Maguy Bengono Nyimiebolo Astride Carole Djeuani Hermann Désiré Mbouobda Antoine Marie Kevin Tiki Theresa Akinimbom Moma Diobe Motassy Manuela Samuel Brice Adounga Christophe Fendju Pangueko Jones Nshanji Issofa Nguetrapouna Rose Theophine Derricka Djem Moutamal A. Ziem Amang Amang Nicolas Niemenak Laboratory of Plant Physiology Department of Biological Sciences Higher Teacher Training College (HTTC) University of Yaoundé I Yaoundé Cameroon Department of Plant Biology Faculty of Sciences University of Yaoundé I Yaoundé Cameroon Department of Biology Higher Teacher Training College Bambili (HTTC) The University of Bamenda Bamenda Cameroon Departments of Microbiology Faculty of Science University of Yaoundé 1 Yaoundé Cameroon

The objective of this work was to carry out a morphological characterization of arbuscular mycorrhizal fungi in the rhizosphere of Xanthosoma sagittifolium L. Schott plants. The plant material used was the white and red cultivars of X. sagittifolium, belonging to age intervals of 3 - 6, 6 - 9, and 9 - 12 months. Three harvest sites were chosen in the Central Region of Cameroon. In each site, soil from the rhizosphere and plant roots was collected in a randomized manner. In the field, the agronomic parameters were evaluated. The physicochemical characteristics of the soils, the mycorrhization index, and the morphological characterization of the mycorrhizal types of each site were carried out. The results obtained show that the agronomic growth parameters varied significantly using the Student Newman and Keuls Test depending on the harvest sites. The soils’ pH in all sites was acidic and ranged between 4.6 and 5.8. The Nkometou site has a loamy texture while the Olembe and Soa sites have loam-clay-sandy and loam-clay textures respectively. The highest mycorrhization frequencies appeared at the Nkometou site, with 75 and 87.33% of the white and red cultivars plant roots at 6 - 9 and 3 - 6 months. The relative abundance of AMF arbuscular mycorrhizal fungal spores in the rhizosphere of X. sagittifolium plants varied with age and cultivar. There were 673 spores between 9 - 12 months in Nkometou in the red cultivar. Six AMF genera were identified in all the different soils collected: Acaulospora sp., Funneliformis sp., Gigaspora sp., Glomus sp., Scutellospora sp., and Septoglomus sp. The genus Glomus sp. was the most present at all age intervals in both cultivars.

关键词： Xanthosoma sagittifolium L. Schott rhizosphere Harvest Site Arbuscular Mycorrhizal Fungi Diversity

A synthetic microbial community used as a bioinoculant can overcome rice production constraints in acid soils

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Science China(Life Sciences) 2024年第5期67卷 1085-1086页

作者： Maureen O’Callaghan Shengjing Shi Resilient Agriculture Group AgResearchLincolnChristcurch 8140New Zealand

A customised synthetic microbial community(SynCom)composed of carefully selected rhizosphere-competent bacterial strains improved rice growth,yield and resistance to soil acidity and Al toxicity.

关键词： soil soils rhizosphere

Nitrogen availability mediates the effects of roots and mycorrhizal fungi on soil organic carbon decomposition:A meta-analysis

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Pedosphere 2024年第2期34卷 289-296页

作者： Tongshuo BAI Yunpeng QIU Shuijin HU Ecosystem Ecology Laboratory College of Resources and Environmental SciencesNanjing Agricultural UniversityNanjing 210095China Department of Entomology&Plant Pathology North Carolina State UniversityRaleigh NC 27695USA

Plant roots and their associated mycorrhizal fungi critically mediate the decomposition of soil organic carbon(C),but the general patterns of their impacts over a broad geographical range and the primary mediating factors remain unclear.Based on a synthesis of 596 paired observations from both field and greenhouse experiments,we found that living roots and/or mycorrhizal fungi increased organic C decomposition by 30.9%,but low soil nitrogen(N)availability(i.e.,high soil C:N ratio)critically mitigated this promotion effect.In addition,the positive effects of living roots and/or mycorrhizal fungi on organic C decomposition were higher under herbaceous and leguminous plants than under woody and non-leguminous plants,respectively.Surprisingly,there was no significant difference between arbuscular mycorrhizal fungi and ectomycorrhizal fungi in their effects on organic C decomposition.Furthermore,roots and/or mycorrhizal fungi significantly enhanced the decomposition of leaf litter but not root litter.These findings advance our understanding of how roots and their symbiotic fungi modulate soil C dynamics in the rhizosphere or mycorrhizosphere and may help improve predictions of soil global C balance under a changing climate.

关键词： arbuscular mycorrhizal fungi ectomycorrhizal fungi leaf litter leguminous plant mycorhizosphere rhizosphere root litter soil C:N ratio

Application of organic manure as a potential strategy to alleviate the limitation of microbial resources in soybean rhizospheric and bulk soils

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Journal of Integrative Agriculture 2024年第6期23卷 2065-2082页

作者： Zhimin Wu Xiaozeng Han Xu Chen Xinchun Lu Jun Yan Wei Wang Wenxiu Zou Lei Yan School of Resources and Environment Northeast Agricultural UniversityHarbin 150030China Key Laboratory of Mollisols Agroecology Northeast Institute of Geography and AgroecologyChinese Academy of SciencesHarbin 150081China Heilongjiang Academy of Agricultural Sciences Harbin 150086China

The development and vigor of soil microorganisms in terrestrial ecosystems are frequently constrained by the limited availability of essential elements such as carbon(C),nitrogen(N),and phosphorus(P).In this study,we investigated the impact of long-term application of varying levels of organic manure,low(7.5 Mg ha^(−1)yr^(−1)),moderate(15.0 Mg ha^(−1)yr^(−1)),and high(22.5 Mg ha^(−1)yr^(−1)),on the stoichiometry of enzymes and the structures of the microbial communities in soybean rhizospheric and bulk soils.The main goal of this research was to examine how soil microbial resource limitations in the rhizosphere respond to different long-term fertilization strategies.The soil enzymatic activities were quantified,and the structure of the microbial community was assessed by analyzing phospholipid fatty acid profiles.When compared to the bulk soil,the rhizospheric soil had significant increases in microbial biomass carbon(MBC),nitrogen(MBN),and phosphorus(MBP),with MBC increasing by 54.19 to 72.86%,MBN by 47.30 to 48.17%,and MBP by 17.37 to 208.47%.Compared with the unfertilized control(CK),the total microbial biomasses of the rhizospheric(increased by 22.80 to 90.82%)and bulk soils(increased by 10.57 to 60.54%)both exhibited increases with the application of organic manure,and the rhizospheric biomass was higher than that of bulk soil.Compared with bulk soil,the activities of C-,N-and P-acquiring enzymes of rhizospheric soil increased by 22.49,14.88,and 29.45%under high levels of organic manure,respectively.Analyses of vector length,vector angle,and scatter plots revealed that both rhizospheric and bulk soils exhibited limitations in terms of both carbon(C)and phosphorus(P)availability.The results of partial least-squares path modelling indicated that the rhizospheric soil exhibited a more pronounced response to the rate of manure application than the bulk soil.The varying reactions of rhizospheric and bulk soils to the extended application of organic manure underscore the crucial function of the rhizosphere in miti

关键词： enzymatic stoichiometry rhizosphere phospholipid fatty acids soybean organic manure

Promotion mechanism of self-transmissible degradative plasmid transfer in maize rhizosphere and its application in naphthalene degradation in soil

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Journal of Environmental Sciences 2022年第5期34卷 240-252页

作者： Qiuyan Jiang Wenwei Lu Lei Zhang Yeqing Jin Yujing Wang Jun Chen Ziyi Ye Ming Xiao Development Center of Plant Germplasm College of Life SciencesShanghai Normal UniversityShanghai 200234China Key Laboratory of Urban Agriculture Ministry of AgricultureShanghai 200240China Department of Food Science Shanghai Business SchoolShanghai 200235China Shanghai Landscape Architecture Construction Co. Ltd.Shanghai 200235China

rhizospheres can promote self-transmissible plasmid transfer,however,the corresponding mechanism has not received much attention.Plant-microbe remediation is an effective way to promote pollutant biodegradation;however,some pollutants,such as naphthalene,are harmful to plants and result in inefficient plant-microbe remediation.In this study,trans-fer of a TOL-like plasmid,a self-transmissible plasmid loaded with genetic determinants for pollutant degradation,among different bacteria was examined in bulk and rhizosphere soils as well as addition of maize root exudate and its artificial root exudate(ARE).The results showed that the numbers of transconjugants and recipients as well as bacterial metabolic activities,such as xylE mRNA expression levels and catechol 2,3-dioxygenase(C23O)activ-ities of bacteria,remained high in rhizosphere soils,when compared with bulk soils.The number of transconjugants and bacterial metabolic activities increased with the increasing exudate and ARE concentrations,whereas the populations of donor and recipient bacteria were substantially unaltered at all concentrations.All the experiments consistently showed that a certain number of bacteria is required for self-transmissible plasmid transfer,and that the increased plasmid transfer might predominantly be owing to bacterial metabolic activ-ity stimulated by root exudates and ARE.Furthermore,ARE addition increased naphthalene degradation by transconjugants in both culture medium and soil.Thus,the combined action of a wide variety of components in ARE might contribute to the increased plasmid transfer and naphthalene degradation.These findings suggest that ARE could be an effectively al-ternative for plant-microbe remediation of pollutants in environments where plants cannot survive.

关键词： Degradative plasmid transfer Naphthalene degradation rhizosphere Root exudates

Soil properties drive the bacterial community to cadmium contamination in the rhizosphere of two contrasting wheat(Triticum aestivum L.)genotypes

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Journal of Environmental Sciences 2023年第6期128卷 117-128页

作者： Min Lu Lukuan Huang Qiong Wang Xuerui Cao Qiang Lin Zhenli He Ying Feng Xiaoe Yang Key Laboratory of Environmental Remediation and Ecosystem Health Ministry of Education(MOE)College of Environmental and Resources SciencesZhejiang UniversityHangzhou 310058China Tea Research Institute Shandong Academy of Agricultural SciencesJinan 250100China College of Ecology Taiyuan University of TechnologyTaiyuan 030024China Zhejiang Institute of Landscape Plants and Flowers Hangzhou 311251China University of Florida Institute of Food and Agricultural SciencesIndian River Research and Education CenterFort PierceFL 34945USA

Cadmium(Cd)bioavailability in the rhizosphere makes an important difference in grain Cd accumulation in wheat.Here,pot experiments combined with 16S rRNA gene sequencing were conducted to compare the Cd bioavailability and bacterial community in the rhizosphere of two wheat(Triticum aestivum L.)genotypes,a low-Cd-accumulating genotype in grains(LT)and a high-Cd-accumulating genotype in grains(HT),grown on four different soils with Cd contamination.Results showed that there was non-significant difference in total Cd concentration among four soils.However,except for black soil,DTPA-Cd concentrations in HT rhizospheres were higher than those of LT in fluvisol,paddy soil and purple soil.Results of 16S rRNA gene sequencing showed that soil type(52.7%)was the strongest determinant of root-associated community,while there were still some differences in rhizosphere bacterial community composition between twowheat genotypes.Taxa specifically colonized in HT rhizosphere(Acidobacteria,Gemmatimonadetes,Bacteroidetes and Deltaproteobacteria)could participate inmetal activation,whereas LT rhizosphere was highly enriched by plant growth-promoting taxa.In addition,PICRUSt2 analysis also predicted high relative abundances of imputed functional profiles related to membrane transport and amino acid metabolism in HT rhizosphere.These results revealed that the rhizosphere bacterial community may be an important factor regulating Cd uptake and accumulation in wheat and indicated that the high Cd-accumulating cultivar might improve Cd bioavailability in the rhizosphere by recruiting taxa related to Cd activation,thus promoting Cd uptake and accumulation.

关键词： Cadmium(Cd) Bioavailability rhizosphere Bacterial community Soil type Wheat genotypes

Interspecific plant interaction via root exudates structures the disease suppressiveness of rhizosphere microbiomes

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Molecular Plant 2023年第5期16卷 849-864页

作者： Xingang Zhou Jingyu Zhang Muhammad Khashi u Rahman Danmei Gao Zhong Wei Fengzhi Wu Francisco Dini-Andreote Key Laboratory of Biology and Genetic Improvement of Horticultural Crops(Northeast Region) Ministry of Agriculture and Rural AffairsDepartment of HorticultureNortheast Agricultural UniversityChangjiang 600Harbin 150030P.R.China Jiangsu Provincial Key Lab for Organic Solid Waste Utilization National Engineering Research Center for Organic-based FertilizersJiangsu Collaborative Innovation Center for Solid Organic Waste Resource UtilizationNanjing Agricultural UniversityWeigang No.1Nanjing 210095P.R.China Department of Plant Science&Huck Institutes of the Life Sciences The Pennsylvania State UniversityUniversity ParkPAUSA

Terrestrial plants can affect the growth and health of adjacent plants via interspecific interaction.Here,we studied the mechanism by which plant root exudates affect the recruitment of the rhizosphere microbiome in adjacent plants—with implications for plant protection—using a tomato(Solanum lycopersicum)–potatoonion(Allium cepa var.agrogatum)intercropping system.First,we showed that the intercropping system results in a disease-suppressive rhizosphere microbiome that protects tomato plants against Verticillium wilt disease caused by the soilborne pathogen Verticillium dahliae.Second,16S rRNA gene sequencing revealed that intercropping with potatoonion altered the composition of the tomato rhizosphere microbiome by promoting the colonization of specific Bacillus sp.This taxon was isolated and shown to inhibit V.dahliae growth and induce systemic resistance in tomato plants.Third,a belowground segregation experiment found that root exudates mediated the interspecific interaction between potatoonion and tomato.Moreover,experiments using split-root tomato plants found that root exudates from potatoonion,especially taxifolin—a flavonoid compound—stimulate tomato plants to recruit plant-beneficial bacteria,such as Bacillus sp.Lastly,ultra-high-pressure liquid chromatography–mass spectrometry analysis found that taxifolin alters tomato root exudate chemistry;thus,this compound acts indirectly in modulating root colonization by Bacillus sp.Our results revealed that this intercropping system can improve tomato plant fitness by changing rhizosphere microbiome recruitment via the use of signaling chemicals released by root exudates of potatoonion.This study revealed a novel mechanism by which interspecific plant interaction modulates the establishment of a disease-suppressive microbiome,thus opening up new avenues of research for precision plant microbiome manipulations.

关键词： intercropping microbiome rhizosphere root exudates soilborne disease

Different genotypes regulate the microbial community structure in the soybean rhizosphere

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Journal of Integrative Agriculture 2023年第2期22卷 585-597页

作者： QU Zheng LI Yue-han XU Wei-hui CHEN Wen-jing HU Yun-long WANG Zhi-gang School of Life Science and Agriculture Forestry Qiqihar UniversityQiqihar 161006P.R.China Heilongjiang Provincial Technology Innovation Center of Agromicrobial Preparation Industrialization Qiqihar 161006P.R.China

The soybean rhizosphere has a specific microbial community,but the differences in microbial community structure between different soybean genotypes have not been explained.The present study analyzed the structure of the rhizosphere microbial community in three soybean genotypes.Differences in rhizosphere microbial communities between different soybean genotypes were verified using diversity testing and community composition,and each genotype had a specific rhizosphere microbial community composition.Co-occurrence network analysis found that different genotype plant hosts had different rhizosphere microbial networks.The relationship between rhizobia and rhizosphere microorganisms in the network also exhibited significant differences between different genotype plant hosts.The ecological function prediction found that different genotypes of soybean recruited the specific rhizosphere microbial community.These results demonstrated that soybean genotype regulated rhizosphere microbial community structure differences.The study provides a reference and theoretical support for developing soybean microbial inoculum in the future.

关键词： soybean rhizosphere genotype microbial community host plants