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orthogroup and phylotranscriptomic analyses identify transcription factors involved in the plant cold response:Acase study of Arabidopsis BBX29

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Plant Communications 2023年第6期4卷 148-162页

作者： Shuo Wang Yirong Shen Deyin Deng Liangyu Guo Yixian Zhang Yuqi Nie Yunfei Du Xijuan Zhao Xiaoxue Ye Jianqin Huang Huahong Huang Jian-Kang Zhu Wenwu Wu State Key Laboratory of Subtropical Silviculture Zhejiang A&F UniversityLin’an 311300HangzhouChina Institute of Tropical Biosciences and Biotechnology Chinese Academy of Tropical Agricultural SciencesHaikou 571101China Institute of Advanced Biotechnology and School of Life Sciences Southern University of Science and TechnologyShenzhen 518055China Center for Advanced Bioindustry Technologies Chinese Academy of Agricultural SciencesBeijing 100081China

C-repeat binding factors(CBFs)are well-known transcription factors(TFs)that regulate plant cold *** sequencing(RNA-seq)data from diverse plant species provide opportunities to identify other TFs involved in the cold ***,this task is challenging because gene gain and loss has led to an intertwined community of co-orthologs and in-paralogs between and within *** orthogroup(closely related homologs)analysis,we identified 10,549 orthogroups in five representative eudicots.A phylotranscriptomic analysis of cold-treated seedlings from eudicots identified 35 high-confidence conserved cold-responsive transcription factor orthogroups(CoCoFos).These 35 CoCoFos included the well-known cold-responsive regulators CBFs,HSFC1,ZAT6/10,and CZF1 among *** used Arabidopsis BBX29 for experimental *** and genetic analyses showed that cold-induction of BBX29 is CBF-and abscisic acid-independent,and BBX29 is a negative regulator of cold *** RNA-seq and Cleavage Under Targets and Tagmentation followed by sequencing analyses revealed that BBX29 represses a set of cold-induced TFs(ZAT12,PRR9,RVE1,MYB96,etc.).Altogether,our analysis yielded a library of eudicot CoCoFos and demonstrated that BBX29 is a negative regulator of cold tolerance in Arabidopsis.

关键词： phylogenomics phylotranscriptomics orthogroup cold acclimation BBX29 CBF-independent pathway

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A Construction of orthogroups with Inverse Transversals

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Journal of Mathematical Research and Exposition 2008年第1期28卷 67-73页

作者： SONG Guang-tian MENG Xiang-qin Department of Mathematics University of Science and Technology of China Ahnui 230026 China College of Science Hohai University Jiangsu 210098 China

In this paper,we construct orthogroups with inverse transversals by means of bands with semilattice transversals and Clifford semigroups.

关键词： orthogroup inverse transversal band Clifford semigroup.

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A Construction of orthogroups

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Northeastern Mathematical Journal 2006年第1期22卷 81-88页

作者：宋光天张建刚刘国新 Department of Mathematics University of Science and Technology of China Hefei Anhui 230026 Department of Mathematics Shanghai Normal University Shanghai 200234

In this paper, an orthogroup is constructed by a band and a Clifford semigroup.

关键词： orthogroup band Clifford semigroup

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One Class of the Least Congruences on Completely Regular Semigroups

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Journal of Donghua University(English Edition) 2021年第3期38卷 278-282页

作者： ZHANG Jiangang SHEN Ran Department of Mathematics Shanghai Normal University Shanghai 200234 China College of Science Donghua University Shanghai 201620 China

Congruence is a very important aspect in the study of the semigroup *** general,the Kernel-trace characterizations,Green's relations and subvarieties are main tools in the consideration of congruences on completely regular *** this paper,we give one class of congruences on completely regular semigroups with the representation of wreath product of translational hulls on completely simple *** this new way,the least Clifford semigroup congruences on completely regular semigroups are generalized.

关键词： completely regular semigroup Clifford congruence translational hull wreath product orthogroup

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