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EXPLICIT-Kinase:A gene expression predictor for dissecting the functions of the Arabidopsis kinome

Journal of Integrative Plant Biology 2022年第7期64卷 1374-1393页

作者： Yuming Peng Wanzhu Zuo Hui Zhou Fenfen Miao Yu Zhang Yue Qin Yi Liu Yu Long Shisong Ma MOE Key Laboratory for Membraneless Organelles and Cellular Dynamics School of Life SciencesUniversity of Science and Technology of ChinaInnovation Academy for Seed DesignChinese Academy of SciencesHefei 230027China State Key Laboratory of Crop Stress Adaptation and Improvement School of Life SciencesHenan UniversityKaifeng 475001China State Key Laboratory for Plant Molecular Genetics Center of Excellence for Molecular Plant SciencesChinese Academy ofSciencesShanghai 200032China School of Data Science University of Science and Technology of ChinaHefei 230027China

Protein kinases regulate virtually all cellular processes,but it remains challenging to determine the functions of all protein kinases,collectively called the“kinome”,in any *** developed a computational approach called EXPLICIT-Kinase to predict the functions of the Arabidopsis *** the activities of many kinases can be regulated transcriptionally,their gene expression patterns provide clues to their functions.A universal gene expression predictor for Arabidopsis was constructed to predict the expression of 30,172 nonkinase genes based on the expression of 994 *** model reconstituted highly accurate transcriptomes for diverse Arabidopsis *** identified the significant kinases as predictor kinases for predicting the expression of Arabidopsis genes and ***,these predictor kinases were often regulators of related pathways,as exemplified by those involved in cytokinesis,tissue development,and stress *** analyses revealed that portions of these predictor kinases are shared and conserved between Arabidopsis and *** an example,we identified a conserved predictor kinase,RAF6,from a stomatal movement *** verified that RAF6 regulates stomatal *** can directly interact with SLAC1,a key anion channel for stomatal closure,and modulate its channel *** approach enables a systematic dissection of the functions of the Arabidopsis kinome.

关键词： kinase kinome predictor

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