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FSPM-P： towards a general functional-structural plant model for robust and comprehensive model development

Frontiers of Computer Science 2016年第6期10卷 1103-1117页

作者： Michael HENKE Winfried KURTH Gerhard H. BUCK-SORLIN Department of Ecoinformatics Biometrics and Forest Growth University of Gottingen Gottingen 37077 Germany UMR1345 Institut de Recherche en Horticulture et Semences (IRHS) AGROCAMPUS OUEST Centre d'Angers Angers 49045 France

In the last decade, functional-structural plant modelling （FSPM） has become a more widely accepted paradigm in crop and tree production, as 3D models for the most important crops have been proposed. Given the wider portfolio of available models, it is now appropriate to enter the next level in FSPM development, by introducing more efficient methods for model development. This includes the consideration of model reuse （by modularisafion）, combination and comparison, and the enhancement of existing mod- els. To facilitate this process, standards for design and communication need to be defined and established. We present a first step towards an efficient and general, i.e., not speciesspecific FSPM, presently restricted to annual or bi-annual plants, but with the potential for extension and further generalization. model structure is hierarchical and object-oriented, with plant organs being the base-level objects and plant individual and canopy the higher-level objects. Modules for the majority of physiological processes are incorporated, more than in other platforms that have a similar aim （e.g., photosynthesis, organ formation and growth）. Simulation runs with several general parameter sets adopted from the literature show that the present prototype was able to reproduce a plausible output range for different crops （rapeseed, barley, etc.） in terms of both the dynamics and final values （at harvest time） of model state variables such as assimilate production, organ biomass, leaf area and architecture.

关键词： functional-structural plant model prototyping,modelling standards teaching / learning FSPM GroIMP

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What are the differences in yield formation among two cucumber (Cucumis sativus L.) cultivars and their F1 hybrid?

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Journal of Integrative Agriculture 2020年第7期19卷 1789-1801页

作者： WANG Xiu-juan KANG Meng-zhen FAN Xing-rong YANG Li-li ZHANG Bao-gui HUANG San-wen Philippe DE REFFYE WANG Fei-yue The State Key Laboratory of Management and Control for Cormplex Systems Institute of AutomationChinese Academy of SciencesBeijing 100190P.R.China Bejjing Engineering Research Center of Intelligent Systems and Technology Institute of AutomationChinese Academy of SciencesBejing 100190P.R.China Innovation Center for Parallel Agriculture Qingdao Academy of Intelligent IndustriesQingdao 266109P.R.China School of Computer Science and Information Engineering Chongqing Technology and Business UniversityChongqing 400067P.R.China College of Information and Electrical Engineering China Agricultural UniversityBeijing 100083P.R.China College of Land Science and Technology China Agricultural UniversityBeijing 100193P.R.China Agricultural Genomes Institute at Shenzhen Chinese Academy of Agricultural SciencesShenzhen 518124P.R.China AMAP University MontpellierCIRADCNRSINRAIRDMontpellier 34000France The School of Computer and Control Engineering University of Chinese Academy of SciencesBeijing 100049P.R.China

To elucidate the mechanisms underlying the differences in yield formation among two parents(P1 and P2) and their F1 hybrid of cucumber, biomass production and whole source–sink dynamics were analyzed using a functional–structural plant model(FSPM) that simulates both the number and size of individual organs. Observations of plant development and organ biomass were recorded throughout the growth periods of the plants. The GreenLab model was used to analyze the differences in fruit setting, organ expansion, biomass production and biomass allocation. The source–sink parameters were estimated from the experimental measurements. Moreover, a particle swarm optimization algorithm(PSO) was applied to analyze whether the fruit setting is related to the source–sink ratio. The results showed that the internal source–sink ratio increased in the vegetative stage and reached a peak until the first fruit setting. The high yield of hybrid F1 is the compound result of both fruit setting and the internal source–sink ratio. The optimization results also revealed that the incremental changes in fruit weight result from the increases in sink strength and proportion of plant biomass allocation for fruits. The model-aided analysis revealed that heterosis is a result of a delicate compromise between fruit setting and fruit sink strength. The organlevel model may provide a computational approach to define the target of breeding by combination with a genetic model.

关键词： cucumber biomass production functional-structural plant model source-sink ratio fruit-setting PSO heterosis

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A functional-structural model of Rice Seedling Coupled with Nitrogen Metabolism

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Journal of Agricultural Science and Technology(B) 2014年第8期4卷 652-660页

作者： Zhuoyang Yusang Lifeng Xu Weilong Ding Zhangyun Yi Yunwei Qiu College of Computer Science & Technology Zhejiang University of Technology Hangzhou 310023 P. R. China School of Biosystems Engineering and Food Science Zhejiang University Hangzhou 310058 P. R. China

With the ability of representing the association and inner-feedback between plant morphological structure and physiological functions, functional-structural plant modeling （FSPM） approach has been used in many works, trying to better understand the mechanisms of integrating plant functions and its structure, and their communication with environmental factors. To do so, an FSPM of rice seedling was developed in this study, including structural morphogenetic model, photosynthetic model and biomass partitioning module. It can thus describe the developmental course of the rice structure dynamically based on the processes of biomass producing and partitioning. Furthermore, the processes of nitrogen metabolism, which influence the N content and growth dynamics of the virtual rice, were also considered. The model was developed with L-system on a platform established with Java programming language, which took over the parsing and visualization of the L-system strings to 3D objects using Java 3D extended library. The physiological processes in the model can be modified and further improved to gradually meet the needs for modeling the whole life cycle of rice, e.g., considering the respiration, and interaction with other environmental factors like CO2, temperature, etc.. The model was developed to provide a platform to systematically study and understand how plant systems like rice seedling work. The model and the virtualization platform can be expanded to provide decision support on N fertilizer application for the rice seedling and the other crops.

关键词： functional-structural plant model rice seedling nitrogen metabolism L-system visualization plant model.

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