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Challenges and perspectives for structural biology of IncRNAs-the example of the Xist IncRNA A-repeats

Journal of Molecular Cell Biology 2019年第10期11卷 845-859页

作者： Alisha NJones Michael Sattler Institute of Structural Biology Helmholtz Zentrum MunchenNeuherberg85764Germany Center for Integrated Protein Scienee Munich and Bavarian NMR Center at Department of Chemistry Technical University of MunichGarching85747Germany

Following the discovery of numerous long non-coding RNA(IncRNA)transcripts in the human genome,their important roles in biology and human disease are emerging.Recent progress in experimental methods has enabled the identification of structural features of IncRNAs.However,determining high-resolution structures is challenging as IncRNAs are expected to be dynamic and adopt multiple conformations,which may be modulated by interaction with protein binding partners.The X-inactive specific transcript(Xist)is necessary for X inactivation during dosage compensation in female placental mammals and one of the beststudied IncRNAs.Recent progress has provided new insights into the domain organization,molecular features,and RNA binding proteins that interact with distinct regions of Xist.The A-repeats located at the 5'end of the transcript are of particular interest as they are essential for mediating silencing ofthe inactive X chromosome.Here,we discuss recent progress with elucidating structural features of the Xist IncRNA,focusing on the A-repeats.We discuss the experimental and computational approaches employed that have led to distinct structural models,likely reflecting the intrinsic dynamics of this RNA.The presence of multiple dynamic conformations may also play an important role in the formation ofthe associated RNPs,thus influencing the molecular mechanism underlying the biological function of the Xist A-repeats.We propose that integrative approaches that combine biochemical experiments and high-resolution structural biology in vitro with chemical probing and functional studies in vivo are required to unravel the molecular mechanisms of IncRNAs.

关键词： In cRNA structural biology Xist chemical pro bing enzymatic footpri nting computational structure predicti on

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