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The chromosome-level reference genome assembly for Panax notoginseng and insights into ginsenoside biosynthesis

Plant Communications 2021年第1期2卷 54-68页

作者： Zhouqian Jiang Lichan Tu Weifei Yang Yifeng Zhang Tianyuan Hu Baowei Ma Yun Lu Xiuming Cui Jie Gao Xiaoyi Wu Yuru Tong Jiawei Zhou Yadi Song Yuan Liu Nan Liu Luqi Huang Wei Gao School of Traditional Chinese Medicine Capital Medical UniversityBeijingChina School of Pharmaceutical Sciences Capital Medical UniversityBeijingChina Annoroad Gene Technology BeijingChina Faculty of Life Science and Technology Kunming University of Science and TechnologyKunmingChina State Key Laboratory Breeding Base of Dao-di Herbs National Resource Center for Chinese Materia MedicaChina Academy of Chinese Medical SciencesBeijingChina Advanced Innovation Center for Human Brain Protection Capital Medical UniversityBeijingChina

Panax notoginseng,a perennial herb of the genus Panax in the family Araliaceae,has played an important role in clinical treatment in China for thousands of years because of its extensive pharmacological ***,we report a high-quality reference genome of ***,with a genome size up to 2.66 Gb and a contig N50 of 1.12 Mb,produced with third-generation PacBio sequencing *** is the first chromosome-level genome assembly for the genus *** genome evolution analysis,we explored phylogenetic and whole-genome duplication events and examined their impact on saponin *** performed a detailed transcriptional analysis of *** and explored genelevel mechanisms that regulate the formation of characteristic ***,we studied the biosynthesis and regulation of saponins at temporal and spatial *** combined multi-omics data to identify genes that encode key enzymes in the *** terpenoid biosynthetic ***,we identified five glycosyltransferase genes whose products catalyzed the formation of different ginsenosides in *** genetic information obtained in this study provides a resource for further exploration of the growth characteristics,cultivation,breeding,and saponin biosynthesis of ***.

关键词： chromosome-level genome ginsenoside P.notoginseng regulation transcriptome

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