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Phylogeny of the Labeoninae （Teleostei, Cypriniformes） based on nuclear DNA sequences and implications on character evolution and biogeography

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Current Zoology 2012年第6期58卷 837-850页

作者： Lanping ZHENG Junxing YANG Xiaoyong CHEN State Key Laboratory of Genetic Resources and evolution Kunming Institute of Zoologythe Chinese Academy of SciencesKunming 650223YunnanChina

Abstract The Labeoninae is a subfamily of the family Cyprinidae, Order Cypriniformes. Oromandibular morphology within the Labeoninae is the greatest among cyprinid fishes. Although several phylogenetic studies about labeonines have been undertaken the results have been inconsistent and a comprehensive phylogeny is needed. Further, an incongruence between morphological and molecular phylogeny requires a systematic exploration of the significance of morphological characters on the basis of the molecular phylogeny. In this study, a total of 292 nucleotide sequences from 73 individuals （representing 24 genera and 73 species） of Labeoninae were analyzed. The results of the phylogenetic analysis indicate that there are four major clades within Labeoninae and three monophyletic lineages within the fourth clade. Results of the character evolution show that all oromandibular morphological characters are homoplastically distributed on the molecular phylogenetic tree and suggests that these characters evolved several times during the history of labeonines. In particular, the labeonine, a specific disc on the lower lip, has been acquired three times and reversed twice. These morphological characters do not have systematic significance but can be useful for taxonomy. The results of biogeography suggest that the Labeoninae originated from Southeast Asia and separately dispersed to Africa, East Asia and South Asia.

关键词： Phylogeny character evolution Biogeography Labeoninae

A new infrageneric classification of Gastrochilus(Orchidaceae:Epidendroideae)based on molecular and morphological data

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Plant Diversity 2024年第4期46卷 435-447页

作者： Jun-Yi Zhang Yue-Hong Cheng Min Liao Yu Feng Sen-Long Jin Ting-Mei He Hai He Bo Xu China-Croatia“Belt and Road”Joint Laboratory on Biodiversity and Ecosystem Services CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization&Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan ProvinceChengdu Institute of BiologyChinese Academy of SciencesP.O.Box 416Chengdu 610041SichuanChina College of Life Sciences Chongqing Normal UniversityChongqing 401331China Wolong National Natural Reserve Administration Bureau Wenchuan 623006SichuanChina University of Chinese Academy of Sciences Beijing 100049China

Gastrochilus is an orchid genus containing 73 species of mainly epiphytic on trees or rocks in mountain forests of tropical and subtropical *** phylogenetic analyses and morphological assessments have failed to produce a well-resolved phylogeny at the infrageneric *** the present study,a new infrageneric classification of Gastrochilus is proposed based on thoroughly morphological and phylogenetic analyses based on 52 *** phylogenetic analysis divided the genus into six sections including three new sections,***,*** and *** also reinstate *** to the specific ***,two new species,*** Jun ***,***&Yue *** and *** Jun ***,***&Yue ***,are described and illustrated.A key to six sections of the genus is presented.

关键词： Gastrochilus Phylogeny character evolution Taxonomy New species

Phylogenetic relationship and morphological evolution in the subfamily Limenitidinae(Lepidoptera:Nymphalidae)

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Progress in Natural Science:Materials International 2008年第11期18卷 1357-1364页

作者： Min Zhang~a Yang Zhong~b Tianwen Cao~c Yupeng Geng~b Yuan Zhang~b Ke Jin~b Zhumei Ren~a Rui Zhang~a Yaping Guo~a Enbo Ma~(a,*) a Research Institute of Applied Biology and College of Life Science and Technology,Shanxi University,Taiyuan,Shanxi 030006,China b School of Life Sciences,Fudan University Shanghai 200433,China c Institute of Plant Protection,Shanxi Academy of Agricultural Science,Taiyuan 030031,China Research Institute of Applied Biology and College of Life Science and Technology Shanxi University Taiyuan Shanxi 030006 China School of Life Sciences Fudan University Shanghai 200433 China Institute of Plant Protection Shanxi Academy of Agricultural Science Taiyuan 030031 China

The mitochondrial cytochrome oxidase subunit I(COI)gene and the nuclear elongation factor 1α(EF-1α)gene were sequenced from 29 species of Nymphalidae(Nymphalidae,Lepidoptera).Phylogenetic trees were constructed based on the sequences determined from the 29 species and sequences of other 36 species deposited in GenBank using the neighbor-joining(N J),maximum likelihood(ML)and Bayesian methods with Libythea celtis(Libytheinae)as the *** phylogenetic trees indicated four major *** A includes three subfamilies:Apaturinae,Nymphalinae,and Limenitidinae,excluding the tribe Limenitidini;Clade B includes the subfam- ilies Heliconiinae and the tribe Limenitidini;Clade C includes Satyrinae,Calinaginae,Charaxinae and Morphinae;and Clade D includes subfamily *** study suggested that the tribes Pseudergolini,Biblidini,Limenitidini and Cyrestidini should be considered as subfamilies and confirmed the interspecific relationships within the subfamily Pseudergolinae,namely Amnosia +(Pseudergolis +(Stibo- chiona + Dichorragia)).We then mapped three morphological characters(spot of anal angle,eyespots,and process from outer margin of hind wing)onto the phylogenetic tree constructed by ML analysis using the combined sequence *** on this the evolutionary patterns of these morphological characters were identifed,they indicated that the three characters evolved repeatedly in the family Nymphalidae.

关键词： Nymphalidae Limenitidinae Mitochondrial DNA cytochrome oxidase subunitⅠgene(COI) Nuclear elongation factor 1αgene(EF-1α) Molecular phylogeny character evolution

Phylogenetic estimation and morphological evolution of Alsineae(Caryophyllaceae)shed new insight into the taxonomic status of the genus Pseudocerastium

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Plant Diversity 2021年第4期43卷 299-307页

作者： Gang Yao Bine Xue Kun Liu Yuling Li Jiuxiang Huang Junwen Zhai College of Forestry and Landscape Architecture South China Agricultural UniversityGuangzhou510642China College of Horticulture and Landscape Architecture Zhongkai University of Agriculture and EngineeringGuangzhou510225GuangdongChina College of Life Sciences Anhui Normal UniversityWuhu241000AnhuiChina College of Landscape Architecture Fujian Agriculture and Forestry UniversityFuzhou350002FujianChina

Pseudocerastium is a monotypic genus in Caryophyllaceae endemic to *** genus has been widely accepted since it was described in 1998,however its phylogenetic position within Caryophyllaceae has never been *** the present study,the whole plastid genome and nuclear ribosomal internal transcribed spacer(ITS)sequences of Pseudocerastium stellarioides was obtained through genome skimming,and the phylogenetic position of the species was studied for the first *** phylogenomic analysis of Caryophyllaceae revealed that Pseudocerastium is clustered within the tribe Alsineae with strong *** analyses based on an enlarged taxon sampling of Alsineae using five DNA regions(matK,rbcL,rps16 intron,trnL-F and ITS)revealed that *** was nested deeply within Cerastium with strong *** of morphological character evolution suggest that the ancestral states in Alsineae include three styles and a six-lobed capsule at the apex,while both Cerastium and Pseudocerastium have five styles and ten lobes at the apex of the capsule,further supporting their close *** species Pseudocerastium stellarioides is similar to Cerastium wilsonii in morphology,but differs in having villous indumentum on the lower part of the filaments and compressed globose ***,based on the present molecular and morphological evidence,the generic name Pseudocerastium is reduced here as a new synonym of Cerastium and the species *** is transferred to Cerastium as ***.

关键词： Alsineae Cerastium character evolution Genome skimming Molecular phylogeny Taxonomy

An updated classification for the hyper-diverse genus Corydalis(Papaveraceae: Fumarioideae)based on phylogenomic and morphological evidence

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Journal of Integrative Plant Biology 2023年第9期65卷 2138-2156页

作者： Jun‐Tong Chen Magnus Lidén Xian‐Han Huang Liang Zhang Xin‐Jian Zhang Tian‐Hui Kuang Jacob BLandis Dong Wang Tao Deng Hang Sun CAS Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201China University of Chinese Academy of Sciences Beijing 100049China evolutionary Biology Centre Systematic BiologyUppsala UniversityUppsala 75236Sweden School of Integrative Plant Science Section of Plant Biology and the L.H.Bailey HortoriumCornell UniversityIthacaNew York 14853USA BTI Computational Biology Center Boyce Thompson InstituteIthacaNew York 14853USA School of Life Sciences Central China Normal UniversityWuhan 430079China

The genus Corydalis, with ca. 530 species, has long been considered taxonomically challenging because of its great variability. Previous molecular analyses,based on a few molecular markers and incomplete taxonomic sampling, were clearly inadequate to delimit sections and subgenera. We have performed phylogenetic analyses of Corydalis and related taxa,using 65 shared protein-coding plastid genes from313 accessions(including 280 samples of ca. 226species of Corydalis) and 152 universal low-copy nuclear genes from 296 accessions(including 271samples of Corydalis) covering all 42 previously recognized sections and five independent “series”.Phylogenetic trees were inferred using Bayesian Inference and Maximum Likelihood. Eight selected morphological characters were estimated using ancestral state reconstructions. Results include:(i) of the three subgenera of Corydalis, two are fully supported by both the plastid and nuclear data;the third,subg. Cremnocapnos, is weakly supported by plastid DNA only, whereas in the nuclear data the two included sections form successive outgroups to the rest of the genus;(ii) among all 42 sections and five“series”, 25 sections and one “series” are resolved as monophyletic in both data sets;(iii) the common ancestor of Corydalis is likely to be a perennial plant with a taproot, yellow flowers with a short saccate spur, linear fruits with recurved fruiting pedicels, and seeds with elaiosomes;(iv) we provide a new classification of Corydalis with four subgenera(of which subg. Bipapillatae is here newly described), 39 sections, 16 of which are consistent with the previous classification, 16 sections have been recircumscribed, one section has been reinstated and six new sections are established. characters associated with lifespan, underground structures, floral spur, fruit and elaiosomes are important for the recognition of subgenera and sections. These new phylogenetic analyses combined with ancestral character reconstructions uncovered previo

关键词： character evolution Corydalis genome skimming Papaveraceae phylogeny

Pediculate Brachiopod Diandongia pista from the Lower Cambrian of South China

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Acta Geologica Sinica(English Edition) 2003年第3期77卷 288-293页

作者： ZHANG Zhifei, HAN Jian, ZHANG Xingliang, LIU Jianni and SHU DeganEarly Life Institute and Key Laboratory for Continental Dynamics of the Ministry of Education,Northwest University, Xi’an, Shaanxi 710069 E-mail: zhangelle@*** Wang Si’en and Xie Guanglian Early Life Institute and Key Laboratory for Continental Dynamics of the Ministry of Education Northwest University Xi\'an Shaanxi 710069

The Chengjiang Lagerstatte has been celebrated for prolific soft-bodied fossils. Based on specimens recently excavated in the Chengjiang Lagerstatte by the Early Life Institute, Northwest University, Diandongia pista Rong, 1974, is directly revealed to be a pediculate brachiopod, assigned to the Family Botsfordiidae, as is further confirmed by the exceptionally preserved vascular system including dorsal and ventral mantle canals. These specimens described herein exhibit some peculiarities, notably the extremely thin and long pedicles, which suggest that Diandongia is epifaunal rather than burrowing brachiopod. A study of this group of animals indicates that they may be vital to understand the relationship between the lingulids and the remaining brachiopods, and the character evolution of the early Cambrian brachiopods.

关键词： Chengjiang Lagerstatte soft-bodied fossils mantle canals character evolution Cambrian China