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Genomic convergence underlying high-altitude adaptation in alpine plants

Journal of Integrative Plant Biology 2023年第7期65卷 1620-1635页

作者： Xu Zhang Tianhui Kuang Wenlin Dong Zhihao Qian Huajie Zhang Jacob BLandis Tao Feng Lijuan Li Yanxia Sun Jinling Huang Tao Deng Hengchang Wang Hang Sun CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture The Chinese Academy of SciencesWuhan Botanical GardenWuhan 430074China Center of Conservation Biology Core Botanical GardensThe Chinese Academy of SciencesWuhan 430074China Yunnan International Joint Laboratory for Biodiversity of Central Asia Key Laboratory for Plant Diversity and Biogeography of East AsiaKunming Institute of BotanyThe Chinese Academy of SciencesKunming 650201China University of Chinese Academy of Sciences Beijing 100049China School of Integrative Plant Science Section of Plant Biology and the L.H.Bailey HortoriumCornell UniversityIthacaNew York 14850USA BTI Computational Biology Center Boyce Thompson InstituteIthacaNew York 14853USA State Key Laboratory of Crop Stress Adaptation and Improvement School of Life SciencesHenan UniversityKaifeng 475004China Department of Biology East Carolina UniversityGreenvilleNorth Carolina 27858USA

Evolutionary convergence is one of the most striking examples of adaptation driven by natural selection.However, genomic evidence for convergent adaptation to extreme environments remains scarce.Here, we assembled reference genomes of two alpine plants, Saussurea obvallata(Asteraceae)and Rheum alexandrae(Polygonaceae), with 37,938 and 61,463 annotated protein-coding genes. By integrating an additional five alpine genomes,we elucidated genomic convergence underlying high-altitude adaptation in alpine plants. Our results detected convergent contractions of diseaseresistance genes in alpine genomes, which might be an energy-saving strategy for surviving in hostile environments with only a few pathogens present.We identified signatures of positive selection on a set of genes involved in reproduction and respiration(e.g., MMD1, NBS1, and HPR), and revealed signatures of molecular convergence on genes involved in self-incompatibility, cell wall modification,DNA repair and stress resistance, which may underlie adaptation to extreme cold, high ultraviolet radiation and hypoxia environments. Incorporating transcriptomic data, we further demonstrated that genes associated with cuticular wax and flavonoid biosynthetic pathways exhibit higher expression levels in leafy bracts, shedding light on the genetic mechanisms of the adaptive “greenhouse” morphology. Our integrative data provide novel insights into convergent evolution at a high-taxonomic level,aiding in a deep understanding of genetic adaptation to complex environments.

关键词： adaptation alpine plants evolutionary rates genomic convergence “greenhouse”morphology high altitude

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Changes in leaf vein traits among vein types of alpine grassland plants on the Tibetan Plateau

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Journal of Mountain Science 2020年第9期17卷 2161-2169页

作者： WANG Chang-shun LYU Wang-wang JIANG Li-li WANG Shi-ping WANG Qi MENG Fan-dong ZHANG Li-rong Key Laboratory of alpine Ecology and Biodiversity Institute of Tibetan Plateau ResearchChinese Academy of SciencesBeijing 100101China College of Agriculture and Forestry Hulunbuir UniversityInner MongoliaHulunbuir 021008China

Vein traits influence photosynthesis and drought resistance and are sensitive to climate change.It is unclear whether vein traits,similar to other leaf traits,have obvious regional characteristics and covariance with other leaf traits,especially in Tibetan Plateau grasslands.We collected 66 species from 37 sites in late July of 2012 and early August of 2013 to investigate leaf vein traits and their relationships with other leaf traits in comparison with the available global database data and to elucidate vein investment of plants with different vein types.The average vein length per area(VLA)of plants in the Tibetan Plateau was within the range of the global dataset,and the relationships among vein traits and other leaf traits of alpine plants were consistent with the global models.The VLAs of parallel-veined grasses and pinnateveined forbs were significantly lower and higher than the global mean value,respectively.The leaf mass perarea and total nitrogen content of parallel-veined grasses were significantly lower and higher,respectively,than the global mean values;the opposite was observed in pinnate-veined forbs.The parallel-veined grasses exhibited almost a four-fold higher vein biomass investment(i.e.,vein mass per leaf mass)than pinnate-veined forbs in the same region.The average VLA and its relationships with other leaf traits of the alpine grassland plants on the Tibetan Plateau had no regional characteristics,suggesting a convergence in plant leaf functioning.plants with different leaf types differ in their adaptation strategies to plateau environments,and this may relate to biomass investment into leaf veins.Our study fills the gap with regard to vein density in alpine grassland species and provides a new perspective for understanding plant physiology and ecology by calculating and comparing the proportion of vein investment among different vein types.

关键词： Parallel vein Pinnate vein Leaf trait alpine plants Plant adaptation Tibetan Plateau

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Impacts of ontogenetic and altitudinal changes on morphological traits and biomass allocation patterns of Fritillaria unibracteata

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Journal of Mountain Science 2020年第1期17卷 83-94页

作者： XU Bo WANG Jin-niu SHI Fu-sun College of Resources and Environment Aba Teachers UniversityAba Tibetan and Qiang Autonomous Prefecture 623002China Chengdu Institute of Biology Chinese Academy of SciencesChengdu 610041China

Environmental variations and ontogeny may affect plant morphological traits and biomass allocation patterns that are related to the adjustments of plant ecological strategies. We selected 2-, 3-and 4-year-old Fritillaria unibracteata plants to explore the ontogenetic and altitudinal changes that impact their morphological traits(i.e., plant height, single leaf area,and specific leaf area) and biomass allocations [i.e.,biomass allocations of roots, bulbs, leaves, stems, and flowers] at relatively low altitudinal ranges(3400 m to 3600 m asl) and high altitudinal ranges(3600 m to4000 m asl). Our results indicated that plant height,root biomass allocation, and stem biomass allocation significantly increased during the process of individual growth and development, but single leaf area, specific leaf area, bulb biomass allocation, and leaf biomass allocation showed opposite trends.Furthermore, the impacts of altitudinal changes on morphological traits and biomass allocations had no significant differences at low altitude, except for single leaf area of 2-year-old plants. At high altitude,significantly reduced plant height, single leaf area and leaf biomass allocation for the 2-year-old plants,specific leaf area for the 2-and 4-year-old plants, and stem biomass allocation were found along altitudinal gradients. Significantly increased sexual reproductive allocation and relatively stable single leaf area and leaf biomass allocation were also observed for the 3-and 4-year-old plants. In addition, stable specific leaf area for the 3-year-old plants and root biomass allocation were recorded. These results suggested that the adaptive adjustments of alpine plants, in particular F. unibracteata were simultaneously influenced by altitudinal gradients and ontogeny.

关键词： alpine plants Morphological traits Biomass allocation patterns Ontogenetic drifts Altitudinal gradients

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alpine tundra species phenology is mostly driven by climate-related variables rather than by photoperiod

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Journal of Mountain Science 2020年第9期17卷 2081-2096页

作者： QUAGLIA Elena RAVETTO ENRI Simone PEROTTI Elisa PROBO Massimiliano LOMBARDI Giampiero LONATI Michele Department of Agricultural Forest and Food SciencesUniversity of TorinoLargo Paolo Braccini 210095Grugliasco(To)Italy Grazing Systems AgroscopeRoute de Duillier 501260NyonSwitzerland

The study of plant phenology has frequently been used to link phenological events to various factors,such as temperature or photoperiod.In the high-alpine environment,proper timing of the phenological cycle has always been crucial to overcome harsh conditions and potential extreme events(i.***.spring frosts)but little is known about the response dynamics of the vegetation,which could shape the alpine landscape in a future of changing climate.alpine tundra vegetation is composed by an array of species belonging to different phytosociological optima and with various survival strategies,and snowbed communities are a relevant expression of such an extreme-climate adapted flora.We set eight permanent plots with each one in a snowbed located on the Cimalegna plateau in Northwestern Italy and then we selected 10 most recurring species among our plots,all typical of the alpine tundra environment and classified in 3different pools:snowbed specialists,grassland species and rocky debris species.For 3 years we registered the phenophases of each species during the whole growing season using an adaptation of the BBCH scale.We later focused on the three most biologically relevant phenophases,i.e.,flower buds visible,full flowering,and beginning of seed dispersion.Three important season-related variables were chosen to investigate their relationship with the phenological cycle of the studied species:(i)the Day Of Year(DOY),the progressive number of days starting from the 1 st of January,used as a proxy of photoperiod,(ii)Days From Snow Melt(DFSM),selected to include the relevance of the snow dynamics,and(iii)Growing Degree Days(GDD),computed as a thermal sum.Our analysis highlighted that phenological development correlated better with DFSM and GDD than with DOY.Indeed,models showed that DOY was always a worse predictor since it failed to overcome interannual variations,while DFSM and marginally GDD were better suited to predict the phenological development of most of the species,despite differences intemperature and snowmelt date

关键词： alpine plants Climate change Growing degree days Italian Alps Salix herbacea Snowbed vegetation

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Phylogeography of Potentilla fruticosa,an alpine shrub on the Qinghai-Tibetan Plateau

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Journal of Plant Ecology 2010年第1期3卷 9-15页

作者： Cui Li Ayako Shimono Haihua Shen Yanhong Tang Environmental Biology Division National Institute for Environmental StudiesOnogawa 16-2Tsukuba 305-8506Japan Faculty of Environment and Economics Shanxi University of Finance and EconomicsTaiyuan 030006ShanxiChina

Aims Our objectives were(i)to elucidate the phylogeography of chloroplast DNA(cpDNA)in Potentilla fruticosa in relation to Quaternary climate change and postglacial colonization,(ii)to infer historical population range expansion using mismatch distribution analyses and(iii)to locate the refugia of this alpine species on the Qinghai-Tibetan plateau during glacial-interglacial periods.Methods Potentilla fruticosa is a widespread species distributed on the Qinghai-Tibetan Plateau.We sampled leaves of P.fruticosa from 10 locations along a route of;1300 km from the northeastern plateau(Haibei,Qinghai)to the southern plateau(Dangxiong,Tibet).We examined the cpDNA of 15 haplotypes for 87 individuals from the 10 populations based on the sequence data from;1000 base pairs of the trnS-trnG and rpl20-rps12.Phylogenetic relationship of haplotypes was analyzed using the Phylip software package and the program TCS.The diversity of populations indices was obtained using the program ARLEQUIN.Important Findings With the limited samples,we found that(i)higher nucleotide diversity often occurs in high-altitude populations,(ii)the ancestral haplotypes distribute in the populations with higher nucleotide diversity than recent haplotypes,(iii)the expansion time of population in the high altitudes was estimated to be approximately at 52-25 ka BP(1000 years Before Present,where"Present"is AD 1950)and that in the low altitudes to be;5.1-2.5 ka BPand(iv)the source location of P.fruticosa is at the high altitudes,which might provide refugia for the species during the interglacial warm periods.The species expanded from the high-elevated locations on the Tanggula Mountains during the Holocene.

关键词： alpine plants climatic changes cpDNA Qinghai Tibet

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