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Primary species recognition and phylogeny of Chondrus (Gigartinales, Rhodophyta) using 18S rDNA sequence data

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Chinese Journal of Oceanology and Limnology 2007年第2期25卷 174-183页

作者：胡自民曾晓起 ALAN T. Critchley STEVE L. Morrell 段德麟 Institute of Oceanology Chinese Academy of Sciences Division of Life Science and Technology Ocean University of China Acadian Seaplants Limited 30 Brown Avenue Dartmouth Nova Scotia B3B 1X8 Canada Dale Fort Field Centre Dale Pembrokeshire SA62 3RD UK

The nuclear-encoded small subunit ribosomal RNA gene （18S rDNA） of 16 isolates of Chondrus from 8 countries were sequenced. A total of 1796 nucleotides were obtained and aligned with the phylogenetic analysis conducted. The results suggest that the entity from Dalian, China, regarded as C. spl is C. pinnulatus. The C. sp2 previously depicted as C. yendoi or Mazzaellajaponica may belong to genus Chondrus. So, 4 Chondrus species, i.e.C. ocellatus, C. nipponicus, C. armatus, and C. pinnulatus are distributed in China. However, the entity from Connemara, Ireland, named C. crispus, is not a Chondrus species but that ofMastocarpus stellatus, although it is morphologically similar to C. crispus. Phylogenetic analysis based on complete 18S rDNA sequence data shows that genus Chondrus includes 3 main lineages： the Northern Pacific lineage, containing C. ocellatus, C. yendoi, and C, nipponicus; C, armatus, and C. pinnulatus form the sub-North Pacific lineage; and the Northern Atlantic Ocean lineage, comprising samples of C. crispus from Canada, Portugal, Ireland, Germany and France. The phylogenetic relationships indicate that genus Chondrus might have a North Pacific ancestral origin, radiated to North Atlantic area, and then formed the species C. crispus.

关键词： 18S rDNA Chondrus red algae phylogeny species recognition

Assessing display variability in wild brown anoles Anolis sagrei using a mechanical lizard model

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Current Zoology 2011年第2期57卷 140-152页

作者： Sarah R. PARTAN Peter OTOVIC Virginia L. PRICE Scott E. BROWN School of Cognitive Science Hampshire College Amherst MA 01002 USA Department of Psychology University of South Florida St. Petersburg FL 33701 USA

Signals used for species identity ought to be highly stereotyped so as to facilitate immediate recognition by conspecifics. It is surprising therefore to find variability in putative species signature displays. The brown anole Anolis sagrei has a high degree of variability in its signature bobbing display. In this study we collected descriptive data on variability in the temporal structure of wild brown anole bobbing patterns, finding that no two displays analyzed had the same temporal structure, and we also tested whether wild brown anoles prefer the signature display over an alternate display pattern by using mechanical robot playbacks in the field. As a response metric we assessed whether or not the lizards showed social responses （pushup, dewlap extension, or head-nod） in response to the robotic presentations. We found that the lizards responded slightly more to the signature than to the alternate pattern, providing support for the idea that despite the variability seen in displays, the signature pattern is meaningful to them. We tested two other independent variables： speed of the display and elevation of the robot during its display, neither of which was significant. Dewlap extensions were given predominantly by adult males and were more likely to be given in the breeding season than the nonbreeding season. Pushups and head-nods were given equally by males and a combined class of females and juveniles, and were not seasonal. Head-nods increased after the robot turned off, suggesting that they may be used in a conversational turn-taking style during communication .

关键词： species recognition Ethorobotics Visual signals Territoriality Signature display Sex differences

Classification and spectrum optimization method of grease based on infrared spectrum

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Friction 2024年第6期12卷 1154-1164页

作者： Xin FENG Yanqiu XIA Peiyuan XIE Xiaohe LI School of Energy Power and Mechanical Engineering North China Electric Power UniversityBeijing 102206China State Key Laboratory of Solid Lubrication Lanzhou Institute of Chemical PhysicsChinese Academy of SciencesLanzhou 730000China

The infrared(IR)absorption spectral data of 63 kinds of lubricating greases containing six different types of thickeners were obtained using the IR *** Kohonen neural network algorithm was used to identify the type of the lubricating *** results show that this machine learning method can effectively eliminate the interference fringes in the IR spectrum,and complete the feature selection and dimensionality reduction of the high-dimensional spectral *** 63 kinds of greases exhibit spatial clustering under certain IR spectrum recognition spectral bands,which are linked to characteristic peaks of lubricating greases and improve the recognition accuracy of these *** model achieved recognition accuracy of 100.00%,96.08%,94.87%,100.00%,and 87.50%for polyurea grease,calcium sulfonate composite grease,aluminum(Al)-based grease,bentonite grease,and lithium-based grease,*** on the different IR absorption spectrum bands produced by each kind of lubricating grease,the three-dimensional spatial distribution map of the lubricating grease drawn also verifies the accuracy of classification while recognizing the *** paper demonstrates fast recognition speed and high accuracy,proving that the Kohonen neural network algorithm has an efficient recognition ability for identifying the types of the lubricating grease.

关键词： grease infrared(IR)spectroscopy layered Kohonen network species recognition spectrum band optimization

Heterospecific interactions and the proliferation of sexually dimorphic traits

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Current Zoology 2012年第3期58卷 453-462页

作者： Karin S. PFENNIG Allen H. HURLBERT Department of Biology University of North Carolina Chapel Hill Chapel Hill NC 27599-3280

Sexual selection is expected to promote speciation by fostering the evolution of sexual traits that minimize reproductive interactions among existing or incipient species. In species that compete for access to, or attention of, females, sexual selec- tion fosters more elaborate traits in males compared to females. If these traits also minimize reproductive interactions with het- erospecifics, then species with enhanced risk of interactions between species might display greater numbers of these sexually di- morphic characters. We tested this prediction in eight families of North American birds. In particular, we evaluated whether the number of sexually dimorphic traits was positively associated with species richness at a given site or with degree of sympatry with congeners. We found no strong evidence of enhanced sexual dimorphism with increasing confamilial species richness at a given site. We also found no overall relationship between the number of sexually dimorphic traits and overlap with congeners across these eight families. However, we found patterns consistent with our prediction within Anatidae （ducks, geese and swans） and, to a lesser degree, Parulidae （New World warblers）. Our results suggest that sexually selected plumage traits in these groups potentially play a role in reproductive isolation [Current Zoology 58 （3）： 453--462, 2012].

关键词： Speciation Reproductive character displacement Sexual selection species recognition Reinforcement

Diversity of wing patterns and abdomen-generated substrate sounds in 3 European scorpionfly species

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Insect Science 2015年第4期22卷 521-531页

作者： Manfred Hartbauer Johannes Gepp Karin Hinteregger Stephan Koblmuller Institute of Zoology KarI-Franzens-University Graz Universitatsplatz 2 8010 Graz Institute for Nature Conservation Herdergasse 3 8010 Graz Austria

In the genus Panorpa （Insecta： Mecoptera）, also known as scorpionflies, pre- mating behavior includes repeated sequences of slow wing movements （waving, fanning, flagging） which are accompanied by rapid abdomen vibrations that generate substantial substrate-borne sound. It is still unknown whether wing patterns or vibratory signals contain information about species identity, sex and/or the quality of potential mating part- ners. Besides species-specific pheromones, these multimodal signals may be of particular importance for the maintenance of reproductive isolation in sympatrically occurring scor- pionfly species. Here, we analyzed phyologenetic relationships among, and the pattern of forewings as well as substrate-borne sound in 3 different sympatric Central-European scorpionfly species （P communis, P germanica, and P alpina）. Divergence time estimates, based on 879 bp of the mitochondrial COI gene, indicate longstanding separate evolu- tionary histories for the studied Panorpa species. Morphological analysis revealed that wing length as an indicator of body size increased in the following order： P alpina 〈 P. germanica 〈 P. communis. Individuals can be assigned to the correct species and sex with high accuracy just by evaluation of the number of dark spots and the proportion of wing pigmentation. Despite high variability of interpulse period at an individual level, across species analysis revealed a positive correlation of average interpulse period as well as mean signal amplitude with forewing length. These results suggest wing patterns, but less likely vibratory signals, to contain information about species identity. Furthermore, receivers may be able to estimate the body size of a signaler solely on the basis of substrate-borne sound.

关键词： courtship signals laser vibrometry phylogeny species recognition substrate-borne sound wing pattern

Female answer specificity to male drumming calls in three closely related species of the stonefly genus Zwicknia (Plecoptera: Capniidae)

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Insect Science 2021年第1期28卷 215-223页

作者： Kirill Mark Orci David Muranyi MTA-ELTE-MTM Ecology Research Group Hungarian Academy of SciencesEotvos Lorand University and the Hungarian Natural History MuseumBudapestHungary Department of Zoology Eszterhazy Karoly UniversityEgerHungary Department of Zoology Hungarian Natural History MuseumBudapestHungary

This study examines the rate of female answers to conspecific versus heterospecific male vibratory calls in three,closely related stonefly species:Zwicknia bifrons,***,and *** a previous study those three species were recognized on the basis of their distinct male drumming calls along with differences in genital morphology and genetic *** this study no-choice playback experiments using original male call samples from each species were performed,and the answer rate of females to con・specific and heterospecific signal variants was *** effect logistic regression models were used to test if male call species identity had a statistically significant effect on female answer *** answered conspecific male calls with significantly higher probability than heterospecific calls in all the three examined species,suggesting that the divergence of vibrational communication can be an important component of the prezygotic isolation between ***,but well detectable responsiveness to heterospecific calls was observable between *** and ***,the two species closest to each other regarding mitochondrial genetic divergence and male call pattern ***,our results are most congruent with a tight,gradual coevolution of male calls and female preferences.

关键词： biotremology drumming call Plecoptera reproductive isolation species recognition vibrational communication

A multi-locus phylogenetic evaluation of Diaporthe (Phomopsis)

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Fungal Diversity 2012年第5期56卷 157-171页

作者： Dhanushka Udayanga Xingzhong Liu Pedro W.Crous Eric H.C.McKenzie Ekachai Chukeatirote Kevin D.Hyde Institute of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesNo 31st West Beichen RoadChaoyang DistrictBeijing 100101People’s Republic of China CBS-KNAW Fungal Biodiversity Centre Uppsalalaan 83584 CTUtrechtThe Netherlands Landcare Research Private Bag 92170AucklandNew Zealand

The genus Diaporthe(Phomopsis)includes important plant pathogenic fungi with wide host ranges and geographic *** the present study,phylogenetic species recognition in Diaporthe is re-evaluated using a multi-locus phylogeny based on a combined data matrix of rDNA ITS,and partial sequences from the translation elongation factor 1-α(EF 1-α),βtubulin(TUB)and calmodulin(CAL)molecular *** sequences of available extype cultures have been included,providing a multi-locus backbone tree for future studies on *** utilizable loci were analyzed individually and in combination,and ITS,EF 1-αand multi-locus phylogenetic trees are *** phylogenetic tree inferred by combined analysis of four loci provided the best resolution for species as compared to single gene *** are provided for nine species previously known in Phomopsis that are transferred to Diaporthe in the present *** unraveling of cryptic species complexes of Diaporthe based on Genealogical Concordance Phylogenetic species recognition(GCPSR)is emphasized.

关键词： Ex-type culture Host diversity Mating types Molecular systematics New combination Phytopathogen species recognition Taxonomy

What are fungal species and how to delineate them?

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Fungal Diversity 2021年第4期109卷 1-25页

作者： K.W.Thilini Chethana Ishara S.Manawasinghe V.G.Hurdeal Chitrabhanu S.Bhunjun M.A.Appadoo Eleni Gentekaki Olivier Raspé Itthayakorn Promputtha Kevin D.Hyde Innovative institute for plant health zhongkai university of agriculture and engineeringguangzhou 510225people’s republic of china center of excellence in fungal research mae fah luang universitychiang rai 57100thailand school of science mae fah luang universitychiang rai 57100thailand department of biology faculty of sciencechiang mai universitychiang mai 50200thailand

This is the opening paper in the special issue of Fungal Diversity,which collates the data on defining *** and recognizing species has long been a controversial *** Darwin’s proposed origin of species,over 30 species criteria have been brought forth and used to define species *** recent times,phylogenetic analyses based on multiple loci have been extensively used as a method to define species ***,only a few mycologists are aware that phylogenetic species criteria can mask discordances among fungal groups,leading to inaccurately defined species *** the current review,we discuss species recognition criteria,how and where these criteria can be applied along with their limitations and derived *** order to delimit fungal species,authors need to take into account not only the phylogenetic and phenotypic coherence,but also the timing of events that lead to fungal speciation and subsequent *** in the rate of phenotypic diversifications and convergent fungal evolution make it difficult to establish a universal species recognition *** best practice can only be defined in the context of each fungal *** this review,we provide a set of guidelines,encouraging an integrative taxonomic approach for species delimitation that can be used to define fungal species boundaries in the *** other papers in this special issue deal with fungal speciation in Ascomycota,Dothideomycetes,Basidiomycota,basal fungi,lichen-forming fungi,plant pathogenic fungi,and yeasts.

关键词： Allopatry Speciation species concepts species criteria species recognition Sympatry

Female mate choice based on pheromone content may inhibit reproductive isolation between distinct populations of Iberian wall lizards

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Current Zoology 2013年第2期59卷 210-220页

作者： Marianne GABIROT Pilar LOPEZ Jose MARTIN Departement Ecologie Comportementale (U.M.R. 5175) CEFE-CNRS 1919 Route de Mende F34293 Montpellier Cedex 5 France Departamento de Ecologia Evolutiva Museo Naeional de Ciencias Naturales C.S.I.C. Jos6 Guti6rrez Abascal 2 28006 Madrid Spain

The Iberian wall lizard Podarcis hispanica forms part of a species complex with several morphologically and geneti- cally distinct types and populations, which may or may not be reproductively isolated. We analyzed whether female mate choice based on males＇ chemical signals may contribute to a current pre-mating reproductive isolation between two distinct populations of P. hispanica from central Spain. We experimentally examined whether females choose to establish territories on areas scent-marked by males of their own population, versus areas marked by males of the other population. Results showed that fe- males did not prefer scent-marks of males from their own population. In contrast, females seemed to attend mostly to among-individual variation in males＇ pheromones that did not differ between populations. Finally, to test for strong premating re- productive isolation, we staged intersexual encounters between males and females. The population of origin of males and females did not affect the probability nor the duration of copulations. We suggest that the different environmental conditions in each population might be selecting for different morphologies and different chemical signals of males that maximize efficiency of communication in each environment. However, females in both populations based mate choice on a similar condition-dependent signal of males. Thus, male signals and female mate choice criteria could be precluding premating reproductive isolation between these phenotypically ＂distinct＂ populations [Current Zoology 59 （2）： 210-220, 2013].

关键词： Podarcis hispanica Chemical communication Mate preferences Mate recognition species recognition Conflict