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nuclei segmentation in Histopathology Images Using Structure-Preserving Color Normalization Based Ensemble Deep Learning Frameworks

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Computers, Materials & Continua 2023年第12期77卷 3077-3094页

作者： Manas Ranjan Prusty Rishi Dinesh Hariket Sukesh Kumar Sheth Alapati Lakshmi Viswanath Sandeep Kumar Satapathy Centre for Cyber-Physical Systems Vellore Institute of TechnologyChennai600127India School of Computer Science and Engineering Vellore Institute of TechnologyChennai600127India Centre for Advanced Data Science Vellore Institute of TechnologyChennai600127India

This paper presents a novel computerized technique for the segmentation of nuclei in hematoxylin and eosin(H&E)stained histopathology *** purpose of this study is to overcome the challenges faced in automated nuclei segmentation due to the diversity of nuclei structures that arise from differences in tissue types and staining protocols,as well as the segmentation of variable-sized and overlapping *** this extent,the approach proposed in this study uses an ensemble of the UNet architecture with various Convolutional Neural Networks(CNN)architectures as encoder backbones,along with stain normalization and test time augmentation,to improve segmentation ***,this paper employs a Structure-Preserving Color Normalization(SPCN)technique as a preprocessing step for stain *** proposed model was trained and tested on both single-organ and multi-organ datasets,yielding an F1 score of 84.11%,mean Intersection over Union(IoU)of 81.67%,dice score of 84.11%,accuracy of 92.58%and precision of 83.78%on the multi-organ dataset,and an F1 score of 87.04%,mean IoU of 86.66%,dice score of 87.04%,accuracy of 96.69%and precision of 87.57%on the single-organ *** findings demonstrate that the proposed model ensemble coupled with the right pre-processing and post-processing techniques enhances nuclei segmentation capabilities.

关键词： nuclei segmentation image segmentation ensemble U-Net deep learning histopathology image convolutional neural networks

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Robust segmentation,Shape Fitting and Morphology Computation of High-Throughput Cell nuclei

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Journal of Shanghai Jiaotong university(Science) 2017年第2期22卷 180-187页

作者：宋杰肖亮练智超 School of Computer Science and Engineering Nanjing University of Science and TechnologyNanjing 210094China

Accurate nuclear classification (e.g., grading of renal cell carcinoma (RCC) biopsy images) is important to better understand fundamental phenomena such as tumor growth. In this paper, an automated pipeline is proposed to quantitatively analyze RCC data. A novel segmentation methodology is firstly used to delineate cell nuclei based on minimum description length (MDL) constrained B-spline curve fitting. From the obtained segmentations, thirteen features are then extracted based on five types of characteristics. These features are used to classify cell nuclei in biopsy images. Associations among nuclei are computed and represented by graphical networks to enable further analysis. Finally, a support vector machine (SVM) based decision-graph classifier is introduced to classify the biopsy images with the purpose of grading. Experimental results on real RCC data show that our SVM-based decision-graph classifier achieves 95.20% of classification accuracy while the SVM classifiers achieve 93.33% of classification accuracy. © 2017, Shanghai Jiaotong University and Springer-Verlag Berlin Heidelberg.

关键词： renal cell carcinoma(RCC) nuclei segmentation nuclear classification feature selection associative measurement grading

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