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Water Biology and Security 2022年第4期1卷 9-39页

作者： Qi-Ya Zhang Fei Ke Lang Gui Zhe Zhao Institute of Hydrobiology Chinese Academy of SciencesWuhan430072China Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources Ministry of EducationCollege of Fisheries and Life ScienceShanghai Ocean UniversityShanghai201306China Department of Marine Biology College of OceanographyHohai UniversityNanjing210098China

Aquatic viruses are naturally present in the aquatic environment and the number of viruses is *** multicellular organisms in aquatic ecosystems may be infected,cross-species transmitted,manipulated,and killed by aquatic viruses,which can lead to cascading ecological *** viruses in unicellular aquatic organisms can alter interactions between host individuals,and are essential in effecting or maintaining the dynamics of aquatic microbial communities,horizontal gene transfer,biodiversity,and modulating ecological processes ***,hosts also impact viral abundance and *** diversity drives multifunctionality in ecosystems,while viruses shape complex microbial communities and are crucial for ecosystem *** review focuses on molecular,genetic,evolutionary,and ecosystemic advances related to emerging and reemerging aquatic viruses,presents the contexts,novel tools,and investigative approaches pertaining to the study of aquatic virology,and discusses the mechanisms by which viruses affect aquatic *** paper provides an efficient and broadly-based blueprint for improving understanding of aquatic viruses.

关键词： Aquatic virus Organism killers Biological evolution engine Aquatic ecosystems molecular features Different lineages Novel investigative approaches Biogeochemical cycles

Calcification-associated molecular traits and therapeutic strategies in hormone receptor-positive HER2-negative breast cancer

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Cancer Biology & Medicine 2024年第5期21卷 400-415页

作者： Yuwei Li Yuzheng Xu Caijin Lin Xi Jin Ding Ma Zhiming Shao Department of Breast Surgery Fudan University Shanghai Cancer CenterShanghai 200032China Key Laboratory of Breast Cancer in Shanghai Fudan University Shanghai Cancer CenterShanghai 200032China Department of Oncology Shanghai Medical CollegeFudan UniversityShanghai 200032China

Objective:Mammographic calcifications are a common feature of breast cancer,but their molecular characteristics and treatment implications in hormone receptor-positive(HR+)/human epidermal growth factor receptor 2-negative(HER2−)breast cancer remain ***:We retrospectively collected mammography records of an HR+/HER2−breast cancer cohort(n=316)with matched clinicopathological,genomic,transcriptomic,and metabolomic *** the basis of mammographic images,we grouped tumors by calcification status into calcification-negative tumors,tumors with probably benign calcifications,tumors with calcification of lowmoderate suspicion for maligancy and tumors with calcification of high suspicion for *** then explored the molecular characteristics associated with each calcification status across multiple ***:Among the different statuses,tumors with probably benign calcifications exhibited elevated hormone receptor immunohistochemical staining scores,estrogen receptor(ER)pathway activation,lipid metabolism,and sensitivity to endocrine *** with calcifications of high suspicion for malignancy had relatively larger tumor sizes,elevated lymph node metastasis incidence,Ki-67 staining scores,genomic instability,cell cycle pathway activation,and may benefit from cyclin-dependent kinase 4 and 6(CDK4/6)***:Our research established links between tumor calcifications and molecular features,thus proposing potential precision treatment strategies for HR+/HER2−breast cancer.

关键词： HR+/HER2−breast cancer mammographic calcifications molecular features precision treatment

Extensive prediction of drug response in mutation-subtype-specific LUAD with machine learning approach

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Oncology Research 2024年第2期32卷 409-419页

作者： KEGANG JIA YAWEI WANG QI CAO YOUYU WANG Department of Thoracic Surgery Sichuan Provincial People’s HospitalUniversity of Electronic Science and Technology of ChinaChengduChina School of Medicine University of Electronic Science and Technology of ChinaChengduChina Department of Assisted Reproductive Medicine Sichuan Provincial Academy of Medical Sciences&Sichuan Provincial People’s HospitalChengduChina

Lung cancer is the most prevalent cancer diagnosis and the leading cause of cancer death *** failure in lung cancer(LUAD)is heavily influenced by drug *** challenge stems from the diverse cell populations within the tumor,each having unique genetic,epigenetic,and phenotypic *** variations lead to varied therapeutic responses,thereby contributing to tumor relapse and disease ***:The Genomics of Drug Sensitivity in Cancer(GDSC)database was used in this investigation to obtain the mRNA expression dataset,genomic mutation profile,and drug sensitivity information of *** Learning(ML)methods,including Random Forest(RF),Artificial Neurol Network(ANN),and Support Vector Machine(SVM),were used to predict the response status of each compound based on the mRNA and mutation characteristics determined using statistical *** most suitable method for each drug was proposed by comparing the prediction accuracy of different ML methods,and the selected mRNA and mutation characteristics were identified as molecular features for the drug-responsive cancer ***,the prognostic influence of molecular features on the mutational subtype of LUAD in publicly available ***:Our analyses yielded 1,564 gene features and 45 mutational features for 46 *** the ML approach to predict the drug response for each medication revealed an upstanding performance for SVM in predicting Afuresertib drug response(area under the curve[AUC]0.875)using CIT,GAS2L3,STAG3L3,ATP2B4-mut,and IL15RA-mut as molecular ***,the ANN algorithm using 9 mRNA characteristics demonstrated the highest prediction performance(AUC 0.780)in Gefitinib with ***:This work extensively investigated the mRNA and mutation signatures associated with drug response in LUAD using a machine-learning approach and proposed a priority algorithm to predict drug response for different drugs.

关键词： Lung adenocarcinoma Drug resistance Machine learning molecular features Personalized treatment

Pathological,molecular,and clinical characteristics of cholangiocarcinoma:A comprehensive review

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World Journal of Gastrointestinal Oncology 2022年第3期14卷 607-627页

作者： Mukul Vij Yogesh Puri Ashwin Rammohan Gowripriya G Rajesh Rajalingam Ilankumaran Kaliamoorthy Mohamed Rela Department of Pathology Dr Rela Institute and Medical centerChennai 600044Tamil NaduIndia Institute of Liver Disease and Transplantation Dr Rela Institute and Medical CenterChennai 600044Tamil NaduIndia

Cholangiocarcinomas are a heterogeneous group of highly aggressive cancers that may arise anywhere within the biliary *** is a wide geographical variation with regards to its incidence,and risk-factor associations which may include liver fluke infection,primary sclerosing cholangitis,and hepatolithiasis amongst *** tumours are classified into intrahepatic,perihilar and distal based on their anatomical ***,intrahepatic cholangiocarcinomas are further sub-classified into small and large duct *** and distal cholangiocarcinomas are usually mucin-producing tubular *** develop through a multistep carcinogenesis and are preceded by dysplastic and in situ *** clinical characteristics and management of these tumours have been extensively elucidated in literature,their ultra-structure and tumour biology remain relatively *** review focuses on the current knowledge of pathological characteristics,molecular alterations of cholangiocarcinoma,and its precursor lesions(including biliary intraepithelial neoplasia,intraductal papillary neoplasms of the bile duct,intraductal tubulopapillary neoplasms and mucinous cystic neoplasm).

关键词： Cholangiocarcinoma Classification Pathology molecular features Precursors lesions Treatment

Pancreatic acinar cell carcinoma:A comprehensive review

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World Journal of Gastroenterology 2022年第40期28卷 5827-5844页

作者： Luis Fernando Calimano-Ramirez Taher Daoud Dheeraj Reddy Gopireddy Ajaykumar C Morani Rebecca Waters Kazim Gumus Albert Russell Klekers Priya R Bhosale Mayur K Virarkar Department of Radiology University of Florida College of Medicine JacksonvilleJacksonvilleFL 32209United States Department of Diagnostic Radiology The University of Texas MD Anderson Cancer CenterHoustonTX 77030United States Department of Diagnostic Radiology University of Florida College of Medicine JacksonvilleJacksonvilleFL 32209United States Department of Pathology and Lab Medicine The University of Texas MD Anderson Cancer CenterHoustonTX 77030United States Department of Research and Diagnostic Radiology University of Florida College of Medicine JacksonvilleJacksonvilleFL 32209United States

Acinar cell carcinoma(ACC)is a rare pancreatic malignancy with distinctive clinical,molecular,and morphological *** long-term survival of ACC patients is substantially superior to that of pancreatic adenocarcinoma *** there are no significant patient series about ACCs,our understanding of this illness is mainly based on case reports and limited patient *** resection is the treatment of choice for patients with the disease restricted to one organ;however,with recent breakthroughs in precision medicine,medicines targeting the one-of-a-kind molecular profile of ACC are on the *** are no standard treatment protocols available for people in which a total surgical resection to cure the condition is not *** a result of shared genetic alterations,ACCs are chemosensitive to agents with activity against pancreatic adenocarcinomas and colorectal *** role of neoadjuvant or adjuvant chemoradiotherapy has not been *** article aims to do a comprehensive literature study and present the most recent information on acinar cell cancer.

关键词： Acinar cell carcinoma Pancreas Imaging Immunohistochemical stains molecular features Surgery Chemotherapy