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Novel and favorable genomic regions for spike related traits in a wheat germplasm Pubing 3504 with high grain number per spike under varying environments

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Journal of Integrative Agriculture 2017年第11期16卷 2386-2401页

作者： CHEN Dan WU Xiao-yang WU Kuo ZHANG Jin-peng LIU Wei-hua YANG Xin-ming LI Xiu-quan LU Yu-qing LI Li-hui National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences Chinese Academy of Agricultural Sciences Biotechnology and Germplasm Resources Institute Yunnan Academy of Agricultural Sciences/Key Laboratory of Southwestern Crop Gene Resources and Germplasm InnovationMinistry of Agriculture/Scientific Observation for Rice Germplasm Resources of YunnanMinistry of Agriculture/Yunnan Provincial Key Laboratory of Agricultural Biotechnology

Grain number per spike （GNPS） is a major factor in wheat yield breeding. A new wheat germplasm Pubing 3504 shows superior features in spike traits. To elucidate the genetic basis of spike and yield related traits in Pubing 3504, 282 F2：3 families were generated from the cross Pubing 3504xJing 4839, and seven spike and yield related traits, including GNPS, spike length （SL）, kernel number per spikelet （KPS）, spikelet number per spike （SNS）, thousand-grain weight （TGW）, spike number per plant （SNP）, and plant height （HT） were investigated. Correlation analysis indicated significant positive correlations between GNPS and spike-related traits, including KPS, SNS, and SL, especially KPS. A genetic map was constructed using 190 polymorphic simple sequence repeat （SSR）, expressed sequence tag （EST）-SSR, and sequence- tagged-site （STS） markers. For the seven traits measured, a total of 37 quantitative trait loci （QTLs） in a single-environment analysis and 25 QTLs in a joint-environment analysis were detected. Additive effects of 70.3% （in a single environment） and 57.6% （in a joint environment） of the QTLs were positively contributed by Pubing 3504 alleles. Five important genomic regions on chromosomes 1A, 4A, 4B, 2D, and 4D could be stably detected in different environments. Among these regions, the marker interval Xmag834-Xbarc83 on the short arm of chromosome 1A was a novel important genomic region that included QTLs controlling GNPS, KPS, SNS, TGW, and SNP with stable environmental repeatability. This genomic region can improve the spike trait and may play a key role in improving wheat yield in the future. We deduced that this genomic region was vital to the high GNPS of Pubing 3504.

关键词： wheat high GNPS germplasm QTL mapping genomic region

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Stable major QTL on chromosomes A07 and A08 increase shelling percentage in peanut(Arachis hypogaea L.)

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The Crop Journal 2022年第3期10卷 820-829页

作者： Weitao Li Nian Liu Li Huang Yuning Chen Jianbin Guo Bolun Yu Huaiyong Luo Xiaojing Zhou Dongxin Huai Weigang Chen Liying Yan Xin Wang Yong Lei Boshou Liao Huifang Jiang Key Laboratory of Biology and Genetic Improvement of Oil Crops Ministry of Agriculture and Rural AffairsOil Crops Research Institute of the Chinese Academy of Agricultural SciencesWuhan 430062HubeiChina

Peanut is a major oilseed and food *** percentage(SP),closely associated with seed yield,is a trait whose improvement is a major goal of peanut *** this study,a mapping population(Xuhua 13×Zhonghua 6)was used to map quantitative trait loci(QTL)controlling SP in four *** stable major QTL for SP were mapped on both SSR-and SNP-based genetic maps.q SPA07.1 on chromosome A07 explained up to 31.7%of phenotypic variation,and q SPA08.2 on chromosome A08 explained up to 10.8%.Favorable alleles of q SPA07.1 and q SPA08.2 were derived from the female and male parents,*** recombinant inbred lines(RILs)carrying both favorable alleles showed superiority in SP over the two parents in all environmental trials.A combination of the two favorable alleles using the linked markers was verified to increase SP by~5%in the RIL population and by~3%SP in diverse peanut cultivars.q SPA07.1 and q SPA08.2 were delimited to respectively a 0.73-Mb interval harboring 96 genes and a 3.93-Mb interval harboring 238 *** five and eight genes with high expression in pods,including enzymes and transcription factors,were assigned as candidate genes for q SPA07.1 and q *** consistent major QTL provide an opportunity for fine mapping of genes controlling SP,and the linked markers may be useful for genetic improvement of SP in peanut.

关键词： Peanut Shelling percentage QTL mapping genomic region Candidate genes InDel marker

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