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Genome assembly of KA105,a new resource for maize molecular breeding and genomic research

The Crop Journal 2023年第6期11卷 1793-1804页

作者： Ting Li Shutu Xu Jiawen Zhao Yapeng Wang Jun Zhang Xin Wei Jianzhou Qu Ruisu Yu Xinghua Zhang Chuang Ma Jiquan Xue The Key Laboratory of Biology and Genetic Improvement of Maize in Arid Area of Northwest Region Northwest A&F UniversityYangling 712100ShaanxiChina Maize Engineering&Technology Research Centre College of AgronomyNorthwest A&F UniversityYangling 712100ShaanxiChina State Key Laboratory of Crop Stress Biology for Arid Areas Center of BioinformaticsCollege of Life SciencesNorthwest A&F UniversityYangling 712100ShaanxiChina

Superior inbred lines are central to maize breeding as sources of natural *** many elite lines have been sequenced,less sequencing attention has been paid to newly developed *** constructed a genome assembly of the elite inbred line KA105,which has recently been developed by an arti-ficial breeding population named Shaan A and has shown desirable characteristics for *** pedigree showed genetic divergence from B73 and other lines in its *** with the B73 reference genome revealed extensive structural variation,58 presence/absence variation(PAV)genes,and 1023 expanded gene families,some of which may be associated with disease resistance.A network-based integrative analysis of stress-induced transcriptomes identified 13 KA105-specific PAV genes,of which eight were induced by at least one kind of stress,participating in gene modules responding to stress such as drought and southern leaf blight *** than 200,000 gene pairs were differentially correlated between KA105 and B73 during kernel *** KA105 reference genome and transcriptome atlas are a resource for further germplasm improvement and surveys of maize genomic variation and gene function.

关键词： Genome assembly Pedigree analysis Structural variation Transcriptome atlas differential network

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