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Transcript profiling of a novel plant meristem,the monocot cambium

Journal of Integrative Plant Biology 2017年第6期59卷 436-449页

作者： Matthew Zinkgraf Suzanne Gerttula Andrew Groover US Forest Service Pacific Southwest Research StationDavisCaliforniaUSA Department of Computer Science University of CaliforniaDavisUSA Department of Plant Biology University of CaliforniaDavisUSA

While monocots lack the ability to produce a vascular cambium or woody growth, some monocot lineages evolved a novel lateral meristem, the monocot cambium, which supports secondary radial growth of stems. In contrast to the vascular cambium found in woody angiosperm and gymnosperm species, the monocot cambium produces secondary vascular bundles, which have an amphivasal organization of tracheids encircling a central strand of phloem. Currently there is no information concerning the molecular genetic basis of the develop- ment or evolution of the monocot cambium. Here we report high-quality transcriptomes for monocot cambium and early derivative tissues in two monocot genera, Yucca and Cordyline. Monocot cambium transcript profiles were compared to those of vascular cambia and secondary xylem tissues of two forest tree species, Populus trichocarpa and Eucalyptus grandis. Monocot cambium transcript levels showed that there are extensive overlaps between the regulation of monocot cambia and vascular cambia. Candidate regulatory genes that vary between the monocot and vascular cambia were also identified, and included members of the KANADI and CLE families involved in polarity and cell-cell signaling, respectively. We suggest that the monocot cambium may have evolved in part through reactivation of genetic mechanisms involved in vascular cambium regulation.

关键词： Chun-Ming Liu, Institute of Crop Science, CAAS, ChinaReceived Feb. 18, 2017 Accepted Mar. 15, 2017 Online on Mar. 17,2017

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Transcriptional and temporal response of Populus stems to gravi-stimulation

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Journal of Integrative Plant Biology 2018年第7期60卷 578-590页

作者： Matthew Zinkgraf Suzanne Gerttula Shutang Zhao Vladimir Filkov Andrew Groover USDA Forest Service Pacific Southwest Research Station 1731 Research Park Drive Davis CA 95618 USA Department of Computer Science University of California Davis One Shields Avenue Davis CA 95618 USA State Key Laboratory of Tree Genetics and Breeding Research Institute of Forestry Chinese Academy of Forestry Beijing 100091 China Department of Plant Biology University of California Davis One Shields Avenue Davis CA 95618 USA

Plants modify development in response to external stimuli, to produce new growth that is appropriate for environmental conditions. For example, gravistimulation of leaning branches in angiosperm trees results in modifications of wood development, to produce tension wood that pulls leaning stems upright. Here, we use gravistimulation and tension wood response to dissect the temporal changes in gene expression underlying wood formation in Populus stems. Using time-series analysis of seven time points over a 14-d experiment, we identified 8,919 genes that were differentially expressed between tension wood （upper） and opposite wood （lower） sides of leaning stems. Clustering of differentially expressed genes showed four major transcriptional responses, including gene clusters whose transcript levels were associated withtwo types of tissue-specific impulse responses that peaked at about 24-48h, and gene clusters with sustained changes in transcript levels that persisted until the end of the 14-d experiment. Functional enrichment analysis of those clusters suggests they reflect temporal changes in pathways associated with hormone regulation, protein Iocalization, cell wall biosynthesis and epigenetic pro- cesses. Time-series analysis of gene expression is an underutilized approach for dissecting complex develop- mental responses in plants, and can reveal gene clusters and mechanisms influencing development.

关键词： Jan Traas University of Lyon France

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